RchiOBHm_Chr3g0457011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007517
Physical Location & Seq
Reverse (-)
6277945 .. 6280856
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42378

Sequence Viewer

Length: 1572 bp
ATGCTTCAAGAGGTTGGTTTTGATGGGATTTCCGTGACAGGAAATACGGAAAGTGGTAGTGAGTCTTCTTCTTCTGCTTGTTCTGAGCAGTTTCAGAATTCAATGCATGAGTCTATCAACTCTGGTTGTCATTATGATGAAATCTCACAAGCTGCAAATAAGAGGCTTAGAGAAACTCCAATCGACTCCAATGAAAAGGCTCAACTGGCTCAAACCCTTCTAAGCTTATCACCACTTGGTTTGTCACTTGGGAAGACGCCCTCTTTCTTGGACTTGAAAGAAGAATTGCCCCGGAAACGAAAGAGTAAGCGTGCAGCTGAAGTTAACGTTCAATCGATGTCCGAGAAGGAAAAATTGAAAGCATCTAACTTCTGTGCCTCGTTACTCAGAATTGGTTCATGGCAGAGAGTAAGTGAACATGAAGGAGACCTGGTTGCAAAGTGTTACTATGCTAAGCGAAAACTGGTGTGGGAAATATTGGATAGTGGTTTGAAGAGCAAGATTGAAGTGCAGTGGTCTGATATTATCTCTTTGAGAGCTGTCATTGAAGAAAACCAACCTGGCATTCTAGAAATTGAGCTAGGCCAGCCACCTACATTTTATCGAGAGTCTAATCCACAGCCAAGAAAGCACACCATGTGGAATCCCGCAACAGATTTCACCAGCGGTGAAGCTCTCATTCACAGGAGGCATTATCTTCAGTTCCCGCCTGGTTTGCTTGACAAGCACTATGAGAAGCTTATACAATGTGAAAGCCGGTTTTTAGAGTTGAGCCAAAGACCTTTCCCAAGCCAAAGATCTCCGTACTTCCGATCACACAATGGAGGTGCAAATATTTCTTTTGAATTTGGTAGCCATGGAGCAGAAATCCCCTCCAAGTTACCGTTACAAGTCCCAATACATCTGGATCCTCAACAAATTCATACATATGAACAAACCAACCCATCTCTTTGTTACACAGATTCTACTTCACCAATATCAGTTATGGATTTTTCTTCGCCTTTAGATGAGGTCATCGGCAACCAAGGAGTTGAAAATCAGTGTATGCCATCATCATGGGATCCGCAAGTCATTGCATATCTTCTAGGGAGAGATCAAATTCCAGCACCGGTTTCTACAGCAGAAGCTCAGTTCAATTCAGCTATTCCTTGCCAAAACTTCAATGAACCAATACCTTATAATCAAGAGTCCCAAATGCTGTTCAATATCGAAAAGCAGTTGTTCAGTCACTTGCAGATTCAGTGTCACAGCAATTCACCAGGCTCATCAATAGCAATTCCAGAGAATTTGAATCATGGAGCGATTACTGGTACTAATAAAACAGGCTATGACCAGGAAATGAGTGCTAACACAAACTTGATTCCGGGTGCAAGGGATCATACAGGCCAGACGCTTCCATTAGGCTGGGTGATGGCACCTCTACCAAACAGCTGGGGTATGCCGCCTCAAGTTGTTCCTTCGAGGCACTCAGGAATGCACCCAGCTGACAGCTCGAGGTATTCATCTTTCAATCAAAATCCAACAACAGATGACTTTGCTGCTTTCAACAACTCGGAGAACCGCTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

58.43

Weight (kDa)

5.67

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_TRF2_HOY1 PF24818 123 - 241 2.9e-55 TRF2/HOY1 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1179
AccB1I GGYRCC 1 cut(s) 1414
AciI CCGC 6 cut(s) 648, 666, 707, 1064, 1442, 1561
AclI AACGTT 1 cut(s) 327
AclWI GGATC 5 cut(s) 902, 915, 1055, 1068, 1383
AcsI RAATTY 5 cut(s) 97, 845, 918, 1098, 1285
AcuI CTGAAG 2 cut(s) 339, 683
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 639
AfaI GTAC 2 cut(s) 806, 1312
AgeI ACCGGT 1 cut(s) 1108
AjnI CCWGG 5 cut(s) 429, 559, 709, 1258, 1332
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 5 cut(s) 902, 915, 1055, 1068, 1383
Ama87I CYCGRG 1 cut(s) 1492
AoxI GGCC 2 cut(s) 583, 1384
ApeKI GCWGC 3 cut(s) 152, 314, 1538
ApoI RAATTY 5 cut(s) 97, 845, 918, 1098, 1285
AsiGI ACCGGT 1 cut(s) 1108
Asp700I GAANNNNTTC 1 cut(s) 394
AsuC2I CCSGG 2 cut(s) 292, 1365
AsuHPI GGTGA 6 cut(s) 222, 652, 680, 963, 1248, 1420
AvaI CYCGRG 1 cut(s) 1492
BamHI GGATCC 2 cut(s) 907, 1060
BanI GGYRCC 1 cut(s) 1414
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BbsI GAAGAC 2 cut(s) 57, 260
BbvI GCAGC 3 cut(s) 139, 326, 1525
BccI CCATC 4 cut(s) 17, 952, 1057, 1405
BciT130I CCWGG 5 cut(s) 431, 561, 711, 1260, 1334
BcnI CCSGG 2 cut(s) 292, 1365
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 3 cut(s) 569, 581, 1085
BfmI CTRYAG 1 cut(s) 1116
BglII AGATCT 1 cut(s) 797
BisI GCNGC 4 cut(s) 153, 315, 1442, 1539
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 4 cut(s) 154, 316, 1443, 1540
Bme1390I CCNGG 7 cut(s) 292, 431, 561, 711, 1260, 1334, 1365
BmeT110I CYCGRG 1 cut(s) 1492
BmiI GGNNCC 3 cut(s) 909, 1062, 1416
BmrFI CCNGG 7 cut(s) 292, 431, 561, 711, 1260, 1334, 1365
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 2 cut(s) 57, 260
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 1431
BpuMI CCSGG 2 cut(s) 292, 1365
Bsa29I ATCGAT 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 290, 856, 1024
BsaWI WCCGGW 1 cut(s) 1108
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bse118I RCCGGY 2 cut(s) 756, 1108
Bse1I ACTGG 3 cut(s) 210, 468, 1312
Bse3DI GCAATG 1 cut(s) 1071
BseBI CCWGG 5 cut(s) 431, 561, 711, 1260, 1334
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 290, 856, 1024
BseMI GCAATG 1 cut(s) 1071
BseMII CTCAG 4 cut(s) 75, 400, 1142, 1482
BseNI ACTGG 3 cut(s) 210, 468, 1312
BseXI GCAGC 3 cut(s) 139, 326, 1525
BseYI CCCAGC 3 cut(s) 1404, 1431, 1480
BsgI GTGCAG 2 cut(s) 333, 530
BshFI GGCC 2 cut(s) 585, 1386
BshNI GGYRCC 1 cut(s) 1414
BshTI ACCGGT 1 cut(s) 1108
BshVI ATCGAT 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 1492
BsiSI CCGG 4 cut(s) 292, 757, 1109, 1364
BslFI GGGAC 2 cut(s) 878, 1174
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 2 cut(s) 878, 1174
BsmI GAATGC 2 cut(s) 564, 1479
BsnI GGCC 2 cut(s) 585, 1386
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 1492
Bsp143I GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
Bsp1720I GCTNAGC 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 856
BspACI CCGC 6 cut(s) 648, 666, 707, 1064, 1442, 1561
BspANI GGCC 2 cut(s) 585, 1386
BspCNI CTCAG 4 cut(s) 76, 399, 1141, 1481
BspDI ATCGAT 1 cut(s) 335
BspLI GGNNCC 3 cut(s) 909, 1062, 1416
BspPI GGATC 5 cut(s) 902, 915, 1055, 1068, 1383
BspQI GCTCTTC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 1414
BspTNI GGTCTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 1071
BsrFI RCCGGY 2 cut(s) 756, 1108
BsrI ACTGG 3 cut(s) 210, 468, 1312
BssAI RCCGGY 2 cut(s) 756, 1108
BssECI CCNNGG 3 cut(s) 290, 856, 1024
BssMI GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 856, 1024
Bst2UI CCWGG 5 cut(s) 431, 561, 711, 1260, 1334
Bst4CI ACNGT 1 cut(s) 885
Bst6I CTCTTC 1 cut(s) 488
BstACI GRCGYC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 312, 587
BstDEI CTNAG 7 cut(s) 84, 167, 221, 386, 453, 1128, 1468
BstDSI CCRYGG 1 cut(s) 856
BstKTI GATC 6 cut(s) 800, 815, 910, 1063, 1096, 1378
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
BstMWI GCNNNNNNNGC 5 cut(s) 206, 586, 628, 715, 724
BstNI CCWGG 5 cut(s) 431, 561, 711, 1260, 1334
BstSCI CCNGG 7 cut(s) 290, 429, 559, 709, 1258, 1332, 1363
BstSFI CTRYAG 1 cut(s) 1116
BstV1I GCAGC 3 cut(s) 139, 326, 1525
BstV2I GAAGAC 2 cut(s) 57, 260
BstX2I RGATCY 3 cut(s) 797, 907, 1060
BstXI CCANNNNNNTGG 3 cut(s) 1056, 1404, 1431
BstYI RGATCY 3 cut(s) 797, 907, 1060
Bsu15I ATCGAT 1 cut(s) 335
BsuRI GGCC 2 cut(s) 585, 1386
BsuTUI ATCGAT 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 856
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 3 cut(s) 518, 1046, 1247
Cac8I GCNNGC 2 cut(s) 312, 587
Cfr10I RCCGGY 2 cut(s) 756, 1108
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 2 cut(s) 265, 1399
CsiI ACCWGGT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 805, 1311
CspAI ACCGGT 1 cut(s) 1108
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 7 cut(s) 107, 399, 419, 637, 857, 1056, 1295
CviQI GTAC 2 cut(s) 805, 1311
DdeI CTNAG 7 cut(s) 84, 167, 221, 386, 453, 1128, 1468
DpnI GATC 6 cut(s) 799, 814, 909, 1062, 1095, 1377
DpnII GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
DraIII CACNNNGTG 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 856, 1024
Eco31I GGTCTC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 339, 683
Eco88I CYCGRG 1 cut(s) 1492
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 5 cut(s) 429, 559, 709, 1258, 1332
EcoT14I CCWWGG 2 cut(s) 856, 1024
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 856, 1024
FaeI CATG 7 cut(s) 110, 402, 422, 640, 860, 1059, 1298
FaqI GGGAC 2 cut(s) 878, 1174
FatI CATG 7 cut(s) 106, 398, 418, 636, 856, 1055, 1294
FauI CCCGC 2 cut(s) 655, 714
FauNDI CATATG 1 cut(s) 928
Fnu4HI GCNGC 4 cut(s) 153, 315, 1442, 1539
Fsp4HI GCNGC 4 cut(s) 153, 315, 1442, 1539
FspBI CTAG 3 cut(s) 569, 581, 1085
GluI GCNGC 4 cut(s) 153, 315, 1442, 1539
GsaI CCCAGC 3 cut(s) 1408, 1435, 1484
HaeIII GGCC 2 cut(s) 585, 1386
HapII CCGG 4 cut(s) 292, 757, 1109, 1364
HgaI GACGC 2 cut(s) 265, 1399
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 7 cut(s) 110, 402, 422, 640, 860, 1059, 1298
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 2 cut(s) 223, 737
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 4 cut(s) 292, 757, 1109, 1364
HphI GGTGA 6 cut(s) 222, 652, 680, 963, 1248, 1420
Hpy166II GTNNAC 2 cut(s) 325, 416
Hpy188I TCNGA 7 cut(s) 85, 96, 343, 389, 520, 812, 1555
Hpy188III TCNNGA 7 cut(s) 8, 569, 605, 905, 1184, 1280, 1470
Hpy8I GTNNAC 2 cut(s) 325, 416
HpyAV CCTTC 4 cut(s) 227, 340, 416, 1467
HpyCH4III ACNGT 1 cut(s) 885
HpyCH4IV ACGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 586, 628, 715, 724
HpyF3I CTNAG 7 cut(s) 84, 167, 221, 386, 453, 1128, 1468
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 7 cut(s) 110, 402, 422, 640, 860, 1059, 1298
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
LguI GCTCTTC 1 cut(s) 488
LmnI GCTCC 2 cut(s) 860, 1298
Lsp1109I GCAGC 3 cut(s) 139, 326, 1525
LweI GCATC 1 cut(s) 371
MabI ACCWGGT 1 cut(s) 429
MaeI CTAG 3 cut(s) 569, 581, 1085
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 9 cut(s) 34, 243, 381, 443, 879, 885, 953, 1226, 1244
MalI GATC 6 cut(s) 799, 814, 909, 1062, 1095, 1377
MboI GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
MflI RGATCY 3 cut(s) 797, 907, 1060
MlyI GAGTC 5 cut(s) 71, 119, 179, 617, 1196
MmeI TCCRAC 1 cut(s) 1544
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 3 cut(s) 135, 927, 1054
MspA1I CMGCKG 5 cut(s) 317, 666, 1431, 1484, 1563
MspI CCGG 4 cut(s) 292, 757, 1109, 1364
MspR9I CCNGG 7 cut(s) 292, 431, 561, 711, 1260, 1334, 1365
Mva1269I GAATGC 2 cut(s) 564, 1479
MvaI CCWGG 5 cut(s) 431, 561, 711, 1260, 1334
MwoI GCNNNNNNNGC 5 cut(s) 206, 586, 628, 715, 724
NciI CCSGG 2 cut(s) 292, 1365
NcoI CCATGG 1 cut(s) 856
NdeI CATATG 1 cut(s) 928
NdeII GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
NlaIII CATG 7 cut(s) 110, 402, 422, 640, 860, 1059, 1298
NlaIV GGNNCC 3 cut(s) 909, 1062, 1416
NmuCI GTSAC 4 cut(s) 34, 243, 1226, 1244
NsiI ATGCAT 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 1492
PciSI GCTCTTC 1 cut(s) 488
PctI GAATGC 2 cut(s) 564, 1479
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 5 cut(s) 643, 962, 1237, 1291, 1360
PinAI ACCGGT 1 cut(s) 1108
PkrI GCNGC 4 cut(s) 154, 316, 1443, 1540
PleI GAGTC 5 cut(s) 70, 118, 179, 616, 1195
PpsI GAGTC 5 cut(s) 70, 118, 179, 616, 1195
PsiI TTATAA 1 cut(s) 1179
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 5 cut(s) 429, 559, 709, 1258, 1332
PspFI CCCAGC 3 cut(s) 1404, 1431, 1480
PspGI CCWGG 5 cut(s) 429, 559, 709, 1258, 1332
PspN4I GGNNCC 3 cut(s) 909, 1062, 1416
PspXI VCTCGAGB 1 cut(s) 1492
PsuI RGATCY 3 cut(s) 797, 907, 1060
PvuII CAGCTG 3 cut(s) 317, 1431, 1484
RsaI GTAC 2 cut(s) 806, 1312
RsaNI GTAC 2 cut(s) 805, 1311
RseI CAYNNNNRTG 3 cut(s) 135, 927, 1054
SapI GCTCTTC 1 cut(s) 488
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 4 cut(s) 153, 315, 1442, 1539
Sau3AI GATC 6 cut(s) 797, 812, 907, 1060, 1093, 1375
SchI GAGTC 5 cut(s) 71, 119, 179, 617, 1196
ScrFI CCNGG 7 cut(s) 292, 431, 561, 711, 1260, 1334, 1365
SexAI ACCWGGT 1 cut(s) 429
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 1 cut(s) 1116
Sfr274I CTCGAG 1 cut(s) 1492
SlaI CTCGAG 1 cut(s) 1492
SmiMI CAYNNNNRTG 3 cut(s) 135, 927, 1054
SmlI CTYRAG 2 cut(s) 1446, 1492
SmoI CTYRAG 2 cut(s) 1446, 1492
SsiI CCGC 6 cut(s) 648, 666, 707, 1064, 1442, 1561
SspI AATATT 2 cut(s) 477, 835
SspMI CTAG 3 cut(s) 569, 581, 1085
StyD4I CCNGG 7 cut(s) 290, 429, 559, 709, 1258, 1332, 1363
StyI CCWWGG 2 cut(s) 856, 1024
TaaI ACNGT 1 cut(s) 885
TaiI ACGT 1 cut(s) 330
TaqI TCGA 6 cut(s) 183, 335, 604, 1209, 1460, 1493
TauI GCSGC 1 cut(s) 1444
TfiI GAWTC 5 cut(s) 643, 962, 1237, 1291, 1360
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 3 cut(s) 518, 1046, 1247
TseFI GTSAC 4 cut(s) 34, 243, 1226, 1244
TseI GCWGC 3 cut(s) 152, 314, 1538
Tsp45I GTSAC 4 cut(s) 34, 243, 1226, 1244
TspDTI ATGAA 8 cut(s) 153, 207, 387, 435, 911, 945, 1179, 1491
TspGWI ACGGA 3 cut(s) 22, 62, 792
TspRI CASTG 3 cut(s) 518, 1046, 1247
XapI RAATTY 5 cut(s) 97, 845, 918, 1098, 1285
XbaI TCTAGA 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 1492
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 3 cut(s) 569, 581, 1085
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.