Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013600.1

Orthogroup ID

OG0007517

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2927

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

gctcaactggctcaaacccttctaagcttaccaccacttggtttgtcacttgggaagacgccctctttcttggacttgaaagaagaattgccccgcaaacgaaagagtaagcgtgcagctgaagttaacgttcaatcgatgtccgagaaggaaaaattgaaagcttctaacttctgtgcctcgttactcagaattggttcatggcagagagtaagtgaacatgaaggagacctggttgcaaagtgttactatgctaagcgaaaactggtgtgggaaatattggatagtggtttgaagagcaagattgaagtgcagtggtctgatattatctctttgagagctgtcattgaagaaaaccaacctggcattctagaaattgagctaggccagccacctacattttatcgagagtctaatccacagccaagaaagcacactatgtggaatcccgcaacagatttcaccagcggcgaagctctcattcacaggaggcattatcttcagttcccgcctggtttgcttgacaagcactatgagaagcttatacaatgtgaaagccggtttttagagttgtgccaaagacctttcccaagccaaagatctccgtacttccgatcacacaatggaggtgcaaatatttcttttgaatttggtagccatggagcagaaatcccctccaagttaccgttacaattcccaatacatctggatcctcaacaaattcatacatatgaacaaaccaacccatctctttgttacacagattctacttcaccaatatcagatgaggtcatcggcaaccaaggagttgaaaatcagtgtatgccatcatcatgggatccgcaagtcattgcatatcttctagggagagatcaaattccagcaccggtttctacagcagaagctcagttcaactcagccattccttgccaaaacttcaatgaaccaataccttataatcaagagtcccaaatgctgttcaatatcgaaaagcagttgttcagtcacttgcagattcagtgtcacagcaattcaccaggctcatcaatagcatttccagagaatttgaatcatggagcgattactggtactaatcaaacaggctatgaccaggaaatgagtgctaacacaaacttgattccgggtgcaagggatcatacaggccagacgcttccattaggctgggtgatggcacctctaccaaacagctggggtatgccgcctcaagttgttccttcgaggcactcaggaatgcacccagctgacagctcgaggtattcatctttcaatcaaaatccaacaacagatgactttaccgctttcaacaactcggagaaccgctggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

449

Amino Acids

50.55

Weight (kDa)

6.12

Isoelectric Point (pI)

59.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07410 FvH4_6g07410 FvH4_6g07410
malus_domestica	MD04G1193300.v1.1 MD12G1206200.v1.1
prunus_persica	Prupe.6G313400_v2.0.a1 Prupe.6G313400_v2.0.a1 Prupe.6G313400_v2.0.a1
pyrus_communis	pycom04g17110 pycom04g17120 pycom04g17130 pycom12g19410
rosa_chinensis	RchiOBHm_Chr3g0457011
rosa_laevigata	RLG00000025252
rosa_multiflora	Rmu_sc0008561.1_g000002 Rmu_sc0013600.1_g000001 Rmu_sc0038392.1_g000002
rosa_roxburghii	Rroxscaffold_6G00422270
rosa_rugosa	Rorug03G0018400 Rorug03G0018500
rosa_samantha	Rh3AG078200 Rh3BG080100 Rh3CG080000 Rh3DG081700
rosa_wichuraiana	Rw3G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	1192
AccB7I	CCANNNNNTGG	1 cut(s)	38
AciI	CCGC	8 cut(s)	94, 450, 468, 509, 842, 1220, 1317, 1339
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	5 cut(s)	704, 717, 833, 846, 1161
AcsI	RAATTY	4 cut(s)	647, 720, 876, 1063
AcuI	CTGAAG	2 cut(s)	141, 485
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	608, 1090
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgeI	ACCGGT	1 cut(s)	886
AjnI	CCWGG	5 cut(s)	231, 361, 511, 1036, 1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	5 cut(s)	704, 717, 833, 846, 1161
Ama87I	CYCGRG	1 cut(s)	1270
AoxI	GGCC	2 cut(s)	385, 1162
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	4 cut(s)	647, 720, 876, 1063
AsiGI	ACCGGT	1 cut(s)	886
Asp700I	GAANNNNTTC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	1143
AsuHPI	GGTGA	4 cut(s)	454, 765, 1026, 1198
AvaI	CYCGRG	1 cut(s)	1270
BamHI	GGATCC	2 cut(s)	709, 838
BanI	GGYRCC	1 cut(s)	1192
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	754, 835, 1183
BciT130I	CCWGG	5 cut(s)	233, 363, 513, 1038, 1112
BcnI	CCSGG	1 cut(s)	1143
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	3 cut(s)	371, 383, 863
BfmI	CTRYAG	1 cut(s)	894
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	3 cut(s)	117, 469, 1220
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	3 cut(s)	118, 470, 1221
Bme1390I	CCNGG	6 cut(s)	233, 363, 513, 1038, 1112, 1143
BmeT110I	CYCGRG	1 cut(s)	1270
BmiI	GGNNCC	3 cut(s)	711, 840, 1194
BmrFI	CCNGG	6 cut(s)	233, 363, 513, 1038, 1112, 1143
BpiI	GAAGAC	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	1209
BpuMI	CCSGG	1 cut(s)	1143
Bsa29I	ATCGAT	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	658, 802
BsaWI	WCCGGW	1 cut(s)	886
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	2 cut(s)	558, 886
Bse1I	ACTGG	3 cut(s)	12, 270, 1090
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	5 cut(s)	233, 363, 513, 1038, 1112
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	658, 802
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	202, 920, 930, 1260
BseNI	ACTGG	3 cut(s)	12, 270, 1090
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	3 cut(s)	1182, 1209, 1258
BsgI	GTGCAG	2 cut(s)	135, 332
BshFI	GGCC	2 cut(s)	387, 1164
BshNI	GGYRCC	1 cut(s)	1192
BshTI	ACCGGT	1 cut(s)	886
BshVI	ATCGAT	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	1270
BsiSI	CCGG	3 cut(s)	559, 887, 1142
BslFI	GGGAC	1 cut(s)	952
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	952
BsmI	GAATGC	2 cut(s)	366, 1257
BsnI	GGCC	2 cut(s)	387, 1164
Bso31I	GGTCTC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	1270
Bsp143I	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	8 cut(s)	94, 450, 468, 509, 842, 1220, 1317, 1339
BspANI	GGCC	2 cut(s)	387, 1164
BspCNI	CTCAG	4 cut(s)	201, 919, 929, 1259
BspDI	ATCGAT	1 cut(s)	137
BspLI	GGNNCC	3 cut(s)	711, 840, 1194
BspPI	GGATC	5 cut(s)	704, 717, 833, 846, 1161
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	1192
BspTNI	GGTCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	849
BsrFI	RCCGGY	2 cut(s)	558, 886
BsrI	ACTGG	3 cut(s)	12, 270, 1090
BssAI	RCCGGY	2 cut(s)	558, 886
BssECI	CCNNGG	2 cut(s)	658, 802
BssMI	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	658, 802
Bst2UI	CCWGG	5 cut(s)	233, 363, 513, 1038, 1112
Bst4CI	ACNGT	1 cut(s)	687
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	114, 389
BstDEI	CTNAG	6 cut(s)	23, 188, 255, 906, 916, 1246
BstDSI	CCRYGG	1 cut(s)	658
BstKTI	GATC	6 cut(s)	602, 617, 712, 841, 874, 1156
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
BstMWI	GCNNNNNNNGC	5 cut(s)	8, 388, 430, 517, 526
BstNI	CCWGG	5 cut(s)	233, 363, 513, 1038, 1112
BstSCI	CCNGG	6 cut(s)	231, 361, 511, 1036, 1110, 1141
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	3 cut(s)	599, 709, 838
BstXI	CCANNNNNNTGG	3 cut(s)	834, 1182, 1209
BstYI	RGATCY	3 cut(s)	599, 709, 838
Bsu15I	ATCGAT	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	387, 1164
BsuTUI	ATCGAT	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	3 cut(s)	320, 824, 1025
Cac8I	GCNNGC	2 cut(s)	114, 389
Cfr10I	RCCGGY	2 cut(s)	558, 886
ClaI	ATCGAT	1 cut(s)	137
CseI	GACGC	2 cut(s)	67, 1177
CsiI	ACCWGGT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	607, 1089
CspAI	ACCGGT	1 cut(s)	886
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	5 cut(s)	201, 221, 659, 834, 1073
CviQI	GTAC	2 cut(s)	607, 1089
DdeI	CTNAG	6 cut(s)	23, 188, 255, 906, 916, 1246
DpnI	GATC	6 cut(s)	601, 616, 711, 840, 873, 1155
DpnII	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
DraIII	CACNNNGTG	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	658, 802
Eco31I	GGTCTC	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	141, 485
Eco88I	CYCGRG	1 cut(s)	1270
EcoRII	CCWGG	5 cut(s)	231, 361, 511, 1036, 1110
EcoT14I	CCWWGG	2 cut(s)	658, 802
ErhI	CCWWGG	2 cut(s)	658, 802
FaeI	CATG	5 cut(s)	204, 224, 662, 837, 1076
FaqI	GGGAC	1 cut(s)	952
FatI	CATG	5 cut(s)	200, 220, 658, 833, 1072
FauI	CCCGC	3 cut(s)	101, 457, 516
FauNDI	CATATG	1 cut(s)	730
Fnu4HI	GCNGC	3 cut(s)	117, 469, 1220
Fsp4HI	GCNGC	3 cut(s)	117, 469, 1220
FspBI	CTAG	3 cut(s)	371, 383, 863
GluI	GCNGC	3 cut(s)	117, 469, 1220
GsaI	CCCAGC	3 cut(s)	1186, 1213, 1262
HaeIII	GGCC	2 cut(s)	387, 1164
HapII	CCGG	3 cut(s)	559, 887, 1142
HgaI	GACGC	2 cut(s)	67, 1177
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	204, 224, 662, 837, 1076
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	3 cut(s)	25, 162, 539
HinfI	GANTC	7 cut(s)	410, 445, 764, 965, 1015, 1069, 1138
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	3 cut(s)	559, 887, 1142
HphI	GGTGA	4 cut(s)	454, 765, 1026, 1198
Hpy166II	GTNNAC	2 cut(s)	127, 218
Hpy188I	TCNGA	6 cut(s)	145, 191, 322, 614, 784, 1333
Hpy188III	TCNNGA	6 cut(s)	371, 407, 707, 962, 1058, 1248
Hpy8I	GTNNAC	2 cut(s)	127, 218
HpyAV	CCTTC	4 cut(s)	29, 142, 218, 1245
HpyCH4III	ACNGT	1 cut(s)	687
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	116, 239, 313, 632, 854, 1012, 1148, 1255
HpyF10VI	GCNNNNNNNGC	5 cut(s)	8, 388, 430, 517, 526
HpyF3I	CTNAG	6 cut(s)	23, 188, 255, 906, 916, 1246
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	204, 224, 662, 837, 1076
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	662, 1076
Lsp1109I	GCAGC	1 cut(s)	128
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	3 cut(s)	371, 383, 863
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	8 cut(s)	45, 183, 245, 681, 687, 755, 1004, 1022
MalI	GATC	6 cut(s)	601, 616, 711, 840, 873, 1155
MboI	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
MboII	GAAGA	6 cut(s)	67, 95, 307, 362, 491, 851
MflI	RGATCY	3 cut(s)	599, 709, 838
MlyI	GAGTC	2 cut(s)	419, 974
MmeI	TCCRAC	1 cut(s)	1322
MroXI	GAANNNNTTC	1 cut(s)	196
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	729, 832
MspA1I	CMGCKG	5 cut(s)	119, 468, 1209, 1262, 1341
MspI	CCGG	3 cut(s)	559, 887, 1142
MspR9I	CCNGG	6 cut(s)	233, 363, 513, 1038, 1112, 1143
Mva1269I	GAATGC	2 cut(s)	366, 1257
MvaI	CCWGG	5 cut(s)	233, 363, 513, 1038, 1112
MwoI	GCNNNNNNNGC	5 cut(s)	8, 388, 430, 517, 526
NciI	CCSGG	1 cut(s)	1143
NcoI	CCATGG	1 cut(s)	658
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
NlaIII	CATG	5 cut(s)	204, 224, 662, 837, 1076
NlaIV	GGNNCC	3 cut(s)	711, 840, 1194
NmuCI	GTSAC	3 cut(s)	45, 1004, 1022
PaeR7I	CTCGAG	1 cut(s)	1270
PciSI	GCTCTTC	1 cut(s)	290
PctI	GAATGC	2 cut(s)	366, 1257
PdmI	GAANNNNTTC	1 cut(s)	196
PfeI	GAWTC	5 cut(s)	445, 764, 1015, 1069, 1138
PflMI	CCANNNNNTGG	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	886
PkrI	GCNGC	3 cut(s)	118, 470, 1221
PleI	GAGTC	2 cut(s)	418, 973
PpsI	GAGTC	2 cut(s)	418, 973
PsiI	TTATAA	1 cut(s)	957
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	5 cut(s)	231, 361, 511, 1036, 1110
PspFI	CCCAGC	3 cut(s)	1182, 1209, 1258
PspGI	CCWGG	5 cut(s)	231, 361, 511, 1036, 1110
PspN4I	GGNNCC	3 cut(s)	711, 840, 1194
PspXI	VCTCGAGB	1 cut(s)	1270
PsuI	RGATCY	3 cut(s)	599, 709, 838
PvuII	CAGCTG	3 cut(s)	119, 1209, 1262
RsaI	GTAC	2 cut(s)	608, 1090
RsaNI	GTAC	2 cut(s)	607, 1089
RseI	CAYNNNNRTG	2 cut(s)	729, 832
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	117, 469, 1220
Sau3AI	GATC	6 cut(s)	599, 614, 709, 838, 871, 1153
SchI	GAGTC	2 cut(s)	419, 974
ScrFI	CCNGG	6 cut(s)	233, 363, 513, 1038, 1112, 1143
SexAI	ACCWGGT	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	894
Sfr274I	CTCGAG	1 cut(s)	1270
SlaI	CTCGAG	1 cut(s)	1270
SmiMI	CAYNNNNRTG	2 cut(s)	729, 832
SmlI	CTYRAG	2 cut(s)	1224, 1270
SmoI	CTYRAG	2 cut(s)	1224, 1270
SsiI	CCGC	8 cut(s)	94, 450, 468, 509, 842, 1220, 1317, 1339
SspI	AATATT	2 cut(s)	279, 637
SspMI	CTAG	3 cut(s)	371, 383, 863
StyD4I	CCNGG	6 cut(s)	231, 361, 511, 1036, 1110, 1141
StyI	CCWWGG	2 cut(s)	658, 802
TaaI	ACNGT	1 cut(s)	687
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	137, 406, 987, 1238, 1271
TauI	GCSGC	2 cut(s)	471, 1222
TfiI	GAWTC	5 cut(s)	445, 764, 1015, 1069, 1138
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	3 cut(s)	320, 824, 1025
TseFI	GTSAC	3 cut(s)	45, 1004, 1022
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	3 cut(s)	45, 1004, 1022
TspDTI	ATGAA	6 cut(s)	189, 237, 713, 747, 957, 1269
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	3 cut(s)	320, 824, 1025
Van91I	CCANNNNNTGG	1 cut(s)	38
XapI	RAATTY	4 cut(s)	647, 720, 876, 1063
XbaI	TCTAGA	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	1270
XmnI	GAANNNNTTC	1 cut(s)	196
XspI	CTAG	3 cut(s)	371, 383, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.