Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038392.1

Orthogroup ID

OG0007517

Physical Location & Seq

Genomic Coordinates Reverse (-)

1125 .. 1358

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038392.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgagtgctaacacaaacttgattccgggtacaagggatcatacaggccagacacttccattaggctgggtgatggcacctctaccaaacagctggggtatgccgcctcaagttgttccttcgaggcactcaggaatgcacccagctgacagctcgaggtattcatctttcaatcaaaatccaacaacagatgactttgccgctttcaacaactcggagaaccgctggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.55

Weight (kDa)

6.81

Isoelectric Point (pI)

62.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07410 FvH4_6g07410 FvH4_6g07410
malus_domestica	MD04G1193300.v1.1 MD12G1206200.v1.1
prunus_persica	Prupe.6G313400_v2.0.a1 Prupe.6G313400_v2.0.a1 Prupe.6G313400_v2.0.a1
pyrus_communis	pycom04g17110 pycom04g17120 pycom04g17130 pycom12g19410
rosa_chinensis	RchiOBHm_Chr3g0457011
rosa_laevigata	RLG00000025252
rosa_multiflora	Rmu_sc0008561.1_g000002 Rmu_sc0013600.1_g000001 Rmu_sc0038392.1_g000002
rosa_roxburghii	Rroxscaffold_6G00422270
rosa_rugosa	Rorug03G0018400 Rorug03G0018500
rosa_samantha	Rh3AG078200 Rh3BG080100 Rh3CG080000 Rh3DG081700
rosa_wichuraiana	Rw3G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	3 cut(s)	104, 201, 223
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	172, 208
AluBI	AGCT	3 cut(s)	93, 146, 153
AluI	AGCT	3 cut(s)	93, 146, 153
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	76
BccI	CCATC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	104, 201
BlsI	GCNGC	2 cut(s)	105, 202
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	144
BseYI	CCCAGC	3 cut(s)	66, 93, 142
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	3 cut(s)	104, 201, 223
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	76
BssMI	GATC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	25
BstXI	CCANNNNNNTGG	2 cut(s)	66, 93
BsuRI	GGCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	30
CviJI	RGCY	5 cut(s)	48, 66, 93, 146, 153
CviKI_1	RGCY	5 cut(s)	48, 66, 93, 146, 153
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	154
FaiI	YATR	2 cut(s)	42, 101
Fnu4HI	GCNGC	2 cut(s)	104, 201
Fsp4HI	GCNGC	2 cut(s)	104, 201
GluI	GCNGC	2 cut(s)	104, 201
GsaI	CCCAGC	3 cut(s)	70, 97, 146
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	26
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	8 cut(s)	30, 39, 52, 62, 79, 117, 156, 211
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	90, 117, 117, 150
MspA1I	CMGCKG	3 cut(s)	93, 146, 225
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	154
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	105, 202
PspFI	CCCAGC	3 cut(s)	66, 93, 142
PspN4I	GGNNCC	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	93, 146
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	104, 201
Sau3AI	GATC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	5 cut(s)	82, 95, 148, 155, 161
Sfr274I	CTCGAG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	108, 154
SmoI	CTYRAG	2 cut(s)	108, 154
SsiI	CCGC	3 cut(s)	104, 201, 223
StyD4I	CCNGG	1 cut(s)	25
TaqI	TCGA	2 cut(s)	122, 155
TauI	GCSGC	2 cut(s)	106, 203
TfiI	GAWTC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	153
XhoI	CTCGAG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.