Prupe.6G313400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
28038758 .. 28042345
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G313400.2

Sequence Viewer

Length: 1956 bp
ATGGTTCAGGGGATTGGTTCTGATGGGATTTTCAGGTGGAACGATGATTTTGATGGCGGTGGTGGGTTTAGTGACGCTTCTGGTGCTTCTGAGTGGTCTCAGAATTCGGAGTCTTTGAAGCGTGACATTGGTTCTAGTTCTGCTCATGAGCACAATATCTCAGAAGCTGCAAACAAGAGGCTCAAGGAAGTTCCCATTGATTCTAATGAAAAGGCTCAACTGGCTCAAACTCTTCTAGGCTTACGTCCTCTTGGTTTGAATCTTGGGAAGACACCCTCTTTTCTGGACTTAACAGAAAGGATTGTGCCCCGGAAAAATAAGATTATTCGAGCACCCGAAATTATTCATAATGATTTTCAATTAATGTCTGACAAGGAAAAACTTAAGGCTTCTAACTTTGGTGCAACATTACTCAGAATTGGTTCATTTCAGAGAGTAACTCAACATGAAGGTGATCTGGTGGCCAAATGTTACTATGCTAAGCGAAAACTGGTGTGGGAAATCTTAGATCAAGGTTTGAAGAGCAAGATTGAAGTGCAGTGGTCCGATATTTTATCAATGAGAGCTGTTATTGAAGAAAATCAGCCTGGAATTCTAGAAATTGAGTTAAAGCAGCCACCTTCTTTCCACCGGGAATCGAATCCGCTGCCAAGAAAGCATACCGTGTGGAATGTGGCAACAGATTTCACCAACGGTGAAGCTCTCATTCACAGGAGGCATTATGTTCAATTTGCTCCAGGTGTTCTTGACAAACACTATGAGAAGCTCGTACAACGCGAACTCCGGTTTTTCGAACTGAGCCAAAAACCTTTCCCAAGTCGAAGATCTCCCTACTTTCAGTCAGACTCCAACGATGGAATTGCAGAAATTTCTTTTAATTTTGATGGACATGGGCCAGAAATCCCCTCCAATTTCCAGTCAACCTTGTCACCATGTGTCCAGACACGTCCTACTCAAAAAATTCGAAGATATGAACAAGCCAAACCATCTCTTAGGATCAAGGATTCGACTTCACCAATATCAGTTATGGATTTTTCTTCGACTTTAGATGAGGCAAACAGCTTCCAAGCTGTTGAAAATCCACATATGCCATACTGGGATCAAGGAAGAATCACAGAAACGACCAACTTTGCAGAGTTTTTCGGGGGAGAGCAACTTCCAGGATTGGTTTCTGTTGCTGCAGCACCTCAAATGAATCCAACCATTTCCTTCCAGAACTTTAATGCATATGATCAAGCGTTGGAACGCGCTAATCTAGAGTCTCAAATACTCGCTTCCATTGAAAACAAGTTGTTGTTTGAGTCAGAAGTTGAGTTTAGTGATGAACAATTCATGACACAGGTCAACTCACTAATTGGATTCCCAGAGCAAGTGAATCCTGCAGTTGGAACTGGTACAAGGCACACAAACTATGGACAACAAATGACTGGTAACGGAAACTTGGTTCCCAGTGCAACTGTTAATGCACTCCAGCCTCATCCAAAGAGCTGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGGGTTGCCGCCACCACCTCAACCAGCCAGCTGGGGGTTGCCGCCACCACCTCAACCAGCCAGCTGGGGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGGGGTGCCGCTACCACCTCAACCAGCCAGCTGGGGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGGGGTGCCGCCACCACCTCAACCAGCCAGCTGGGAGGTGCCGCCACAAGGTTCTGCCGAGAACTCAGGGATACATATGGCTGGGCACAACTCACTGCATTCACCTTTCTCTCAAAATCAAAGGATGGAAGATTTCAATAATTTGGCAAACCGCTGGAATCCACAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

652

Amino Acids

72.02

Weight (kDa)

5.78

Isoelectric Point (pI)

63.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 9 cut(s) 1492, 1525, 1624, 1657, 1690, 1723, 1756, 1789, 1822
AccII CGCG 2 cut(s) 777, 1248
AclWI GGATC 2 cut(s) 1004, 1107
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 4 cut(s) 103, 591, 867, 960
AdeI CACNNNGTG 1 cut(s) 935
AfaI GTAC 2 cut(s) 771, 1396
AflII CTTAAG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 944
AjiI CACGTC 1 cut(s) 947
AjnI CCWGG 3 cut(s) 586, 736, 1159
AloI GAACNNNNNNTCC 2 cut(s) 1428, 1460
Alw21I GWGCWC 2 cut(s) 153, 334
Alw26I GTCTC 2 cut(s) 102, 1266
AlwI GGATC 2 cut(s) 1004, 1107
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 2 cut(s) 462, 893
ApeKI GCWGC 5 cut(s) 167, 613, 646, 1178, 1181
ApoI RAATTY 4 cut(s) 103, 591, 867, 960
AseI ATTAAT 1 cut(s) 362
Asp700I GAANNNNTTC 2 cut(s) 342, 421
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 2 cut(s) 543, 893
AsuC2I CCSGG 2 cut(s) 310, 632
AsuHPI GGTGA 6 cut(s) 464, 679, 707, 921, 1005, 1878
AsuII TTCGAA 2 cut(s) 792, 964
AvaII GGWCC 1 cut(s) 543
BaeGI GKGCMC 2 cut(s) 309, 1872
BalI TGGCCA 1 cut(s) 464
BanI GGYRCC 9 cut(s) 1492, 1525, 1624, 1657, 1690, 1723, 1756, 1789, 1822
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 153, 334
BbvI GCAGC 5 cut(s) 154, 625, 633, 1165, 1193
BccI CCATC 6 cut(s) 17, 47, 848, 878, 994, 1903
BcgI CGANNNNNNTGC 4 cut(s) 628, 662, 842, 876
BciT130I CCWGG 3 cut(s) 588, 738, 1161
BciVI GTATCC 1 cut(s) 1848
BclI TGATCA 1 cut(s) 1231
BcnI CCSGG 2 cut(s) 310, 632
BcoDI GTCTC 2 cut(s) 102, 1266
BfaI CTAG 4 cut(s) 135, 236, 596, 1256
BfmI CTRYAG 2 cut(s) 1179, 1380
BfrI CTTAAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 1848
BglII AGATCT 1 cut(s) 824
BlpI GCTNAGC 1 cut(s) 480
Bme1390I CCNGG 5 cut(s) 310, 588, 632, 738, 1161
Bme18I GGWCC 1 cut(s) 543
BmgBI CACGTC 1 cut(s) 947
BmgT120I GGNCC 2 cut(s) 543, 893
BmrFI CCNGG 5 cut(s) 310, 588, 632, 738, 1161
BmrI ACTGGG 2 cut(s) 1105, 1443
BmuI ACTGGG 2 cut(s) 1105, 1443
BoxI GACNNNNGTC 1 cut(s) 1340
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpmI CTGGAG 2 cut(s) 720, 1454
Bpu1102I GCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 2 cut(s) 792, 964
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 310, 632
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 783
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bse1I ACTGG 7 cut(s) 225, 495, 916, 1100, 1396, 1432, 1449
BseBI CCWGG 3 cut(s) 588, 738, 1161
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 2 cut(s) 1477, 1914
BseMII CTCAG 6 cut(s) 81, 113, 174, 427, 788, 1863
BseNI ACTGG 7 cut(s) 225, 495, 916, 1100, 1396, 1432, 1449
BseSI GKGCMC 2 cut(s) 309, 1872
BseXI GCAGC 5 cut(s) 154, 625, 633, 1165, 1193
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 777, 1248
BshFI GGCC 2 cut(s) 464, 895
BshNI GGYRCC 9 cut(s) 1492, 1525, 1624, 1657, 1690, 1723, 1756, 1789, 1822
BsiHKAI GWGCWC 2 cut(s) 153, 334
BsiSI CCGG 3 cut(s) 310, 631, 784
BsmAI GTCTC 2 cut(s) 102, 1266
BsmI GAATGC 1 cut(s) 1882
BsnI GGCC 2 cut(s) 464, 895
Bso31I GGTCTC 1 cut(s) 102
Bsp119I TTCGAA 2 cut(s) 792, 964
Bsp1286I GDGCHC 4 cut(s) 153, 309, 334, 1872
Bsp143I GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
Bsp1720I GCTNAGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 464, 895
BspCNI CTCAG 6 cut(s) 82, 112, 173, 426, 789, 1862
BspFNI CGCG 2 cut(s) 777, 1248
BspHI TCATGA 2 cut(s) 145, 1332
BspMAI CTGCAG 2 cut(s) 1183, 1384
BspPI GGATC 2 cut(s) 1004, 1107
BspQI GCTCTTC 1 cut(s) 515
BspT104I TTCGAA 2 cut(s) 792, 964
BspT107I GGYRCC 9 cut(s) 1492, 1525, 1624, 1657, 1690, 1723, 1756, 1789, 1822
BspTI CTTAAG 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 7 cut(s) 225, 495, 916, 1100, 1396, 1432, 1449
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
Bst2UI CCWGG 3 cut(s) 588, 738, 1161
Bst4CI ACNGT 3 cut(s) 664, 695, 1459
Bst6I CTCTTC 2 cut(s) 237, 515
BstAFI CTTAAG 1 cut(s) 383
BstBI TTCGAA 2 cut(s) 792, 964
BstDEI CTNAG 9 cut(s) 90, 99, 160, 413, 480, 505, 797, 992, 1849
BstF5I GGATG 2 cut(s) 1477, 1914
BstFNI CGCG 2 cut(s) 777, 1248
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 6 cut(s) 457, 511, 827, 999, 1102, 1234
BstMAI GTCTC 2 cut(s) 102, 1266
BstMBI GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 83, 221, 655
BstNI CCWGG 3 cut(s) 588, 738, 1161
BstPAI GACNNNNGTC 1 cut(s) 1340
BstSCI CCNGG 5 cut(s) 308, 586, 630, 736, 1159
BstSFI CTRYAG 2 cut(s) 1179, 1380
BstSLI GKGCMC 2 cut(s) 309, 1872
BstUI CGCG 2 cut(s) 777, 1248
BstV1I GCAGC 5 cut(s) 154, 625, 633, 1165, 1193
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 824
BstYI RGATCY 1 cut(s) 824
BsuI GTATCC 1 cut(s) 1848
BsuRI GGCC 2 cut(s) 464, 895
BtrI CACGTC 1 cut(s) 947
BtsCI GGATG 2 cut(s) 1477, 1914
BtsI GCAGTG 2 cut(s) 545, 1877
BtsIMutI CAGTG 3 cut(s) 545, 1456, 1877
CaiI CAGNNNCTG 1 cut(s) 167
CciI TCATGA 2 cut(s) 145, 1332
CfoI GCGC 1 cut(s) 1250
Cfr13I GGNCC 2 cut(s) 543, 893
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 770, 1395
CviAII CATG 5 cut(s) 146, 446, 890, 933, 1333
CviQI GTAC 2 cut(s) 770, 1395
DdeI CTNAG 9 cut(s) 90, 99, 160, 413, 480, 505, 797, 992, 1849
DpnI GATC 6 cut(s) 456, 510, 826, 998, 1101, 1233
DpnII GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
DraIII CACNNNGTG 1 cut(s) 935
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 237, 515
EarI CTCTTC 2 cut(s) 237, 515
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 543
EcoRI GAATTC 2 cut(s) 103, 591
EcoRII CCWGG 3 cut(s) 586, 736, 1159
EcoT22I ATGCAT 1 cut(s) 1228
FaeI CATG 5 cut(s) 149, 449, 893, 936, 1336
FatI CATG 5 cut(s) 145, 445, 889, 932, 1332
FauNDI CATATG 3 cut(s) 1086, 1228, 1860
FbaI TGATCA 1 cut(s) 1231
FokI GGATG 2 cut(s) 1464, 1921
FspBI CTAG 4 cut(s) 135, 236, 596, 1256
GlaI GCGC 1 cut(s) 1249
GsuI CTGGAG 2 cut(s) 720, 1454
HaeIII GGCC 2 cut(s) 464, 895
HapII CCGG 3 cut(s) 310, 631, 784
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 1250
Hin1II CATG 5 cut(s) 149, 449, 893, 936, 1336
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HincII GTYRAC 2 cut(s) 921, 1345
HindII GTYRAC 2 cut(s) 921, 1345
HpaII CCGG 3 cut(s) 310, 631, 784
HphI GGTGA 6 cut(s) 464, 679, 707, 921, 1005, 1878
Hpy166II GTNNAC 2 cut(s) 921, 1345
Hpy188III TCNNGA 8 cut(s) 146, 284, 596, 746, 940, 1213, 1256, 1333
Hpy8I GTNNAC 2 cut(s) 921, 1345
HpyAV CCTTC 3 cut(s) 443, 630, 1219
HpyCH4III ACNGT 3 cut(s) 664, 695, 1459
HpyCH4IV ACGT 2 cut(s) 244, 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 221, 655
HpyF3I CTNAG 9 cut(s) 90, 99, 160, 413, 480, 505, 797, 992, 1849
HpySE526I ACGT 2 cut(s) 244, 946
Hsp92II CATG 5 cut(s) 149, 449, 893, 936, 1336
HspAI GCGC 1 cut(s) 1248
Ksp22I TGATCA 1 cut(s) 1231
Kzo9I GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 5 cut(s) 154, 625, 633, 1165, 1193
MaeI CTAG 4 cut(s) 135, 236, 596, 1256
MaeII ACGT 2 cut(s) 244, 946
MaeIII GTNAC 6 cut(s) 71, 122, 436, 470, 927, 1430
MalI GATC 6 cut(s) 456, 510, 826, 998, 1101, 1233
MboI GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
MboII GAAGA 9 cut(s) 224, 280, 532, 587, 834, 978, 1029, 1119, 1925
MflI RGATCY 1 cut(s) 824
MhlI GDGCHC 4 cut(s) 153, 309, 334, 1872
MlsI TGGCCA 1 cut(s) 464
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 119, 839, 1268, 1310
MmeI TCCRAC 4 cut(s) 873, 1221, 1223, 1366
Mox20I TGGCCA 1 cut(s) 464
Mph1103I ATGCAT 1 cut(s) 1228
MroXI GAANNNNTTC 2 cut(s) 342, 421
MscI TGGCCA 1 cut(s) 464
MseI TTAA 7 cut(s) 290, 362, 384, 608, 876, 1221, 1461
MslI CAYNNNNRTG 2 cut(s) 450, 1951
Msp20I TGGCCA 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 3 cut(s) 310, 631, 784
MspR9I CCNGG 5 cut(s) 310, 588, 632, 738, 1161
Mva1269I GAATGC 1 cut(s) 1882
MvaI CCWGG 3 cut(s) 588, 738, 1161
MvnI CGCG 2 cut(s) 777, 1248
MwoI GCNNNNNNNGC 3 cut(s) 83, 221, 655
NciI CCSGG 2 cut(s) 310, 632
NdeI CATATG 3 cut(s) 1086, 1228, 1860
NdeII GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
NlaIII CATG 5 cut(s) 149, 449, 893, 936, 1336
NmeAIII GCCGAG 1 cut(s) 1867
NmuCI GTSAC 3 cut(s) 71, 122, 927
NsiI ATGCAT 1 cut(s) 1228
NspV TTCGAA 2 cut(s) 792, 964
PagI TCATGA 2 cut(s) 145, 1332
PciSI GCTCTTC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 1 cut(s) 1882
PdmI GAANNNNTTC 2 cut(s) 342, 421
PfoI TCCNGGA 1 cut(s) 1159
PleI GAGTC 4 cut(s) 118, 839, 1267, 1309
PpsI GAGTC 4 cut(s) 118, 839, 1267, 1309
PshAI GACNNNNGTC 1 cut(s) 1340
PshBI ATTAAT 1 cut(s) 362
Psp6I CCWGG 3 cut(s) 586, 736, 1159
PspGI CCWGG 3 cut(s) 586, 736, 1159
PspPI GGNCC 2 cut(s) 543, 893
PstI CTGCAG 2 cut(s) 1183, 1384
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 824
RsaI GTAC 2 cut(s) 771, 1396
RsaNI GTAC 2 cut(s) 770, 1395
RseI CAYNNNNRTG 2 cut(s) 450, 1951
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 7 cut(s) 290, 362, 384, 608, 876, 1221, 1461
Sau3AI GATC 6 cut(s) 454, 508, 824, 996, 1099, 1231
Sau96I GGNCC 2 cut(s) 543, 893
SchI GAGTC 4 cut(s) 119, 839, 1268, 1310
ScrFI CCNGG 5 cut(s) 310, 588, 632, 738, 1161
SduI GDGCHC 4 cut(s) 153, 309, 334, 1872
SfcI CTRYAG 2 cut(s) 1179, 1380
SfuI TTCGAA 2 cut(s) 792, 964
SinI GGWCC 1 cut(s) 543
SmiMI CAYNNNNRTG 2 cut(s) 450, 1951
SmlI CTYRAG 2 cut(s) 182, 383
SmoI CTYRAG 2 cut(s) 182, 383
SspMI CTAG 4 cut(s) 135, 236, 596, 1256
StyD4I CCNGG 5 cut(s) 308, 586, 630, 736, 1159
TaaI ACNGT 3 cut(s) 664, 695, 1459
TaiI ACGT 2 cut(s) 247, 949
TaqI TCGA 7 cut(s) 328, 638, 792, 820, 964, 1007, 1040
Tru1I TTAA 7 cut(s) 290, 362, 384, 608, 876, 1221, 1461
Tru9I TTAA 7 cut(s) 290, 362, 384, 608, 876, 1221, 1461
TscAI CASTG 3 cut(s) 545, 1456, 1884
TseFI GTSAC 3 cut(s) 71, 122, 927
TseI GCWGC 5 cut(s) 167, 613, 646, 1178, 1181
Tsp45I GTSAC 3 cut(s) 71, 122, 927
TspDTI ATGAA 8 cut(s) 222, 335, 414, 462, 987, 1208, 1321, 1338
TspGWI ACGGA 1 cut(s) 1449
TspRI CASTG 3 cut(s) 545, 1456, 1884
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 543
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 4 cut(s) 103, 591, 867, 960
XbaI TCTAGA 2 cut(s) 595, 1255
XmnI GAANNNNTTC 2 cut(s) 342, 421
XspI CTAG 4 cut(s) 135, 236, 596, 1256
Zsp2I ATGCAT 1 cut(s) 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.