FvH4_6g07840

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008214
Physical Location & Seq
Reverse (-)
4684922 .. 4687311
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07840.t2

Sequence Viewer

Length: 501 bp
ATGCCGGAAACGCTTCCGCCGTCTCCGTTGGGTGAAGAATCGATGGAAGATGTTGGAGAGAATGATCCGATTGTGAGCGATGGGTACTTCACCAAAGGAGCATTGGTTGAGGTTAGCAGTGATGAGGAAGGATTCCATGGTTCTTGGTTTGCGGCAACTGTAGTGAAATCCATGGGGAAAGACGGGTTCCTTGTCGAGTACAAGTGCTTGAGGACGGAGGATGATTCGGCATTTTTGAGAGAGGAGGTGGATAACATGCACATACGACCTCATCCACCGGAAAATGTTGTTGATTGTTTCAAGAAACTTGATGAAGTTGATGCTTTGCACAATGATGGTTGGTGGGTTGGTGTGGTTTCTAAGGTTCTAAGAGGTTCAAGGTACATAGTCTACTTCAGGGAAACCTGTGAGGAACTTGAATATCATCACTCTGAGTTAAGACTTCATCAGGACTGGATTGATGGCAAATGGGTTATCCCATCTCAGGAATTAAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

167

Amino Acids

19.04

Weight (kDa)

4.61

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 33 - 93 4.6e-21 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 390
AciI CCGC 2 cut(s) 17, 152
AclWI GGATC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 379
AfaI GTAC 3 cut(s) 86, 200, 383
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 3 cut(s) 301, 378, 419
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 44, 82
BccI CCATC 5 cut(s) 37, 74, 329, 455, 487
BceAI ACGGC 1 cut(s) 4
BcoDI GTCTC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 229
Bsa29I ATCGAT 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 136, 171
BsaWI WCCGGW 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 136, 171
BseGI GGATG 2 cut(s) 226, 271
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 423, 497
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 41
BsiSI CCGG 2 cut(s) 5, 278
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 2 cut(s) 136, 171
BspACI CCGC 2 cut(s) 17, 152
BspCNI CTCAG 2 cut(s) 424, 496
BspDI ATCGAT 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 188
BspPI GGATC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 136, 171
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 2 cut(s) 136, 171
Bst4CI ACNGT 1 cut(s) 160
BstDEI CTNAG 4 cut(s) 360, 368, 432, 483
BstDSI CCRYGG 2 cut(s) 136, 171
BstF5I GGATG 2 cut(s) 226, 271
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 41
BtgI CCRYGG 2 cut(s) 136, 171
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 226, 271
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 41
Csp6I GTAC 3 cut(s) 85, 199, 382
CviAII CATG 3 cut(s) 137, 172, 256
CviQI GTAC 3 cut(s) 85, 199, 382
DdeI CTNAG 4 cut(s) 360, 368, 432, 483
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 136, 171
Eco57I CTGAAG 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 136, 171
ErhI CCWWGG 2 cut(s) 136, 171
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 140, 175, 259
FaiI YATR 6 cut(s) 138, 173, 257, 263, 386, 499
FatI CATG 3 cut(s) 136, 171, 255
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 233, 258
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HapII CCGG 2 cut(s) 5, 278
Hin1II CATG 3 cut(s) 140, 175, 259
HinfI GANTC 3 cut(s) 38, 132, 224
HpaII CCGG 2 cut(s) 5, 278
HphI GGTGA 2 cut(s) 44, 82
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 69, 433
Hpy188III TCNNGA 3 cut(s) 301, 449, 485
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 259, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 4 cut(s) 360, 368, 432, 483
Hsp92II CATG 3 cut(s) 140, 175, 259
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 18, 291, 382, 418, 434, 439, 470
LweI GCATC 1 cut(s) 310
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 47, 59
MluCI AATT 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 9 cut(s) 103, 118, 204, 211, 235, 238, 279, 365, 403
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 437, 491
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 2 cut(s) 5, 278
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 2 cut(s) 136, 171
NdeII GATC 1 cut(s) 64
NlaIII CATG 3 cut(s) 140, 175, 259
NlaIV GGNNCC 1 cut(s) 188
NspI RCATGY 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 38, 132, 224
PkrI GCNGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 188
RsaI GTAC 3 cut(s) 86, 200, 383
RsaNI GTAC 3 cut(s) 85, 199, 382
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 437, 491
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 64
SetI ASST 7 cut(s) 114, 249, 271, 366, 376, 383, 407
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 488
SsiI CCGC 2 cut(s) 17, 152
StyI CCWWGG 2 cut(s) 136, 171
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 41, 195
TasI AATT 1 cut(s) 488
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 3 cut(s) 38, 132, 224
Tru1I TTAA 2 cut(s) 437, 491
Tru9I TTAA 2 cut(s) 437, 491
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 327, 434
TspGWI ACGGA 2 cut(s) 15, 230
TspRI CASTG 1 cut(s) 124
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.