Rroxscaffold_6G00421770

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008214
Physical Location & Seq
Forward (+)
42837789 .. 42838374
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421770.1

Sequence Viewer

Length: 366 bp
ATGAATGACCCTAATGTAACTGATTCAATTGTGAGCAATGAAATCTTCACCAAGGGAGCACTGGTTGAGGTTAGCAGTGATGAAGAAGGATTCCATGGTTCTTGGTTTGCTGCCACCGTAGTGAAATCTGTGGGGAAAGACAAGTTCCTTATTGAGTACACGTGCTTGAGGACAGAGGATAATTTGGCATTTTTGAGAGAAGAGGTTGATAACATGCACATACGACCTCATCCACCAGAAAATGTTGTTGATCGTTTCAAGCAACTTGACGAGGTTGATGCTTTGTTCAATGATGGGTGGTGGGTTGGTGTTATTTCGAAGGTTCTAAGAGGTTCAAGGTACATAGTATTTTTGGGGAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

4.72

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 19 - 79 1.2e-20 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 162
AfaI GTAC 2 cut(s) 158, 341
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 4 cut(s) 27, 259, 289, 336
AleI CACNNNNGTG 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 317
BbrPI CACGTG 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmsI GCATC 1 cut(s) 268
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 51, 94
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 51, 94
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 250
Bsp19I CCATGG 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 51, 94
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 51, 94
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 59, 82
Csp6I GTAC 2 cut(s) 157, 340
CviAII CATG 2 cut(s) 95, 214
CviQI GTAC 2 cut(s) 157, 340
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 51, 94
Eco72I CACGTG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 51, 94
ErhI CCWWGG 2 cut(s) 51, 94
FaeI CATG 2 cut(s) 98, 217
FaiI YATR 4 cut(s) 96, 215, 221, 344
FatI CATG 2 cut(s) 94, 213
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
Hin1II CATG 2 cut(s) 98, 217
HinfI GANTC 2 cut(s) 23, 90
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 80, 313
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 2 cut(s) 98, 217
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 2 cut(s) 47, 249
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 268
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 37, 95, 212
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 2 cut(s) 27, 181
MnlI CCTC 7 cut(s) 61, 162, 169, 196, 237, 265, 323
MslI CAYNNNNRTG 1 cut(s) 119
MunI CAATTG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 94
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 98, 217
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 119
PfeI GAWTC 2 cut(s) 23, 90
PkrI GCNGC 1 cut(s) 112
PmaCI CACGTG 1 cut(s) 162
PmlI CACGTG 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 162
PspCI CACGTG 1 cut(s) 162
RsaI GTAC 2 cut(s) 158, 341
RsaNI GTAC 2 cut(s) 157, 340
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 61
SetI ASST 8 cut(s) 72, 164, 207, 229, 276, 324, 334, 341
SfaNI GCATC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 27, 181
StyI CCWWGG 2 cut(s) 51, 94
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 317
TasI AATT 2 cut(s) 27, 181
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 2 cut(s) 23, 90
TscAI CASTG 2 cut(s) 66, 82
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 17, 54, 96
TspRI CASTG 2 cut(s) 66, 82
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.