Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008214

Physical Location & Seq

Genomic Coordinates Reverse (-)

6592395 .. 6594194

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG081600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGATCTGTGTTGAGACTTGAGAGAGGTGGGCTTCATATAGCTGAGGAGTTAGAACTTTGCCCTTGTGGGTTCTACAAATTATCAAAAAAGCCACTCGCACCTCCTAATGACCCTAATGTAACTGATTCAATTGTGAGCAATGAAATCTTCACCAAGGGAGCACTGGTTGAGGTTAGCAGTGATGAAGAAGGATTCCATGGTTCTTGGTTTGCTGCCACTGTAGTGAAATCTGTGGGGATAGACAAGTTCCTTATTGAGTACAAGTGCTTGAGGACAGAGGATGATTTGGCATTTTTGAGAGAAGAGGTTGATAACATGCACATACGACCTCATCCACCAGAAAATGTTGTTGATCGTTTCAAGCAACTTGACGAGGTTGATGCTTTGTACAATGATGGGTGGTGGGTTGGTGTTATTTCTAAGGTTCTAAGAGGTTCAAGGTACATAGTCTACTTCAAGGAAACCTGTGAGGAACTTGAATATCAGCACTCTGAGTTAAGGCTTCATCAGGACTGGATTGATGGCAAATGGGTTATCCCATCTCGGGAGTTAAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

187

Amino Acids

21.64

Weight (kDa)

5.1

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	54 - 114	4.3e-19	Agenet domain
Agenet	PF05641	125 - 182	8.8e-06	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06520 AT3G06520
fragaria_vesca	FvH4_6g07840 FvH4_6g07840
malus_domestica	MD04G1191600.v1.1
prunus_persica	Prupe.6G310200_v2.0.a1
pyrus_communis	pycom04g16920 pycom12g19080
rosa_chinensis	RchiOBHm_Chr3g0457541
rosa_laevigata	RLG00000025212 RLG00000025214
rosa_multiflora	Rmu_sc0007404.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421750 Rroxscaffold_6G00421770
rosa_rugosa	Rorug03G0021200
rosa_samantha	Rh3AG081600 Rh3AG081800 Rh3BG083800 Rh3BG084000 Rh3CG084000 Rh3CG084200 Rh3DG085500
rosa_wichuraiana	Rw3G007020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	453
AfaI	GTAC	3 cut(s)	263, 392, 446
AfiI	CCNNNNNNNGG	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	132, 364, 441, 460, 482
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	392, 518, 550
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	41, 292
BsaJI	CCNNGG	2 cut(s)	156, 199
BsaXI	ACNNNNNCTCC	3 cut(s)	153, 183, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	171, 521
Bse3DI	GCAATG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	156, 199
BseGI	GGATG	2 cut(s)	289, 334
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	36, 486
BseNI	ACTGG	2 cut(s)	171, 521
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	5, 355
Bsp19I	CCATGG	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	37, 487
BsrDI	GCAATG	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	171, 521
BssECI	CCNNGG	2 cut(s)	156, 199
BssMI	GATC	2 cut(s)	5, 355
BssT1I	CCWWGG	2 cut(s)	156, 199
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	4 cut(s)	45, 423, 431, 495
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	289, 334
BstKTI	GATC	2 cut(s)	8, 358
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	2 cut(s)	5, 355
BstNSI	RCATGY	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	289, 334
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	164, 187, 219
Csp6I	GTAC	3 cut(s)	262, 391, 445
CviAII	CATG	2 cut(s)	200, 319
CviJI	RGCY	4 cut(s)	34, 44, 94, 505
CviKI_1	RGCY	4 cut(s)	34, 44, 94, 505
CviQI	GTAC	3 cut(s)	262, 391, 445
DdeI	CTNAG	4 cut(s)	45, 423, 431, 495
DpnI	GATC	2 cut(s)	7, 357
DpnII	GATC	2 cut(s)	5, 355
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	156, 199
Eco88I	CYCGRG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	156, 199
ErhI	CCWWGG	2 cut(s)	156, 199
FaeI	CATG	2 cut(s)	203, 322
FaiI	YATR	7 cut(s)	39, 41, 201, 320, 326, 449, 562
FatI	CATG	2 cut(s)	199, 318
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	296, 321
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	203, 322
HinfI	GANTC	2 cut(s)	128, 195
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	2 cut(s)	512, 548
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	322
HpyF3I	CTNAG	4 cut(s)	45, 423, 431, 495
Hsp92II	CATG	2 cut(s)	203, 322
Kzo9I	GATC	2 cut(s)	5, 355
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	152, 354, 481, 497, 502
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	7, 357
MboI	GATC	2 cut(s)	5, 355
MboII	GAAGA	3 cut(s)	142, 200, 317
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	80, 132
MseI	TTAA	2 cut(s)	500, 554
MslI	CAYNNNNRTG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	5, 355
NlaIII	CATG	2 cut(s)	203, 322
NspI	RCATGY	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	128, 195
PkrI	GCNGC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	3 cut(s)	263, 392, 446
RsaNI	GTAC	3 cut(s)	262, 391, 445
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	500, 554
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	5, 355
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	20, 271
SmoI	CTYRAG	2 cut(s)	20, 271
Sse9I	AATT	2 cut(s)	80, 132
StyI	CCWWGG	2 cut(s)	156, 199
TaaI	ACNGT	1 cut(s)	223
TasI	AATT	2 cut(s)	80, 132
TatI	WGTACW	2 cut(s)	261, 390
TfiI	GAWTC	2 cut(s)	128, 195
Tru1I	TTAA	2 cut(s)	500, 554
Tru9I	TTAA	2 cut(s)	500, 554
TscAI	CASTG	3 cut(s)	171, 187, 226
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	4 cut(s)	26, 159, 201, 497
TspRI	CASTG	3 cut(s)	171, 187, 226
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.