FvH4_6g08870

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
5273395 .. 5277023
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08870.t1

Sequence Viewer

Length: 1320 bp
ATGGCAAGCACCAGCTCTGAATCCAACCCCAAGATGATCAGTACAATCAAGATCAACAGCCCTAACGTTAGCGACTTGGTCTTTGAAACCCCTATTCCCTCGTCTGTCTTTGAAGTCGGCGAGGACCGGCCCATCTTTCGCCTCGGACCAGCAGACCCCGAGGACTTGGCGGAGATTTTCGAAAAGATTGGGGAACAATTCACTGAACATGGTTTTCCACACCCGGTTGTGACATTGACCGGAATCATTGATGAGCATGCCGAAGCCGGCAAGACCAGAGAGGCTCTTTATGTGTTCCGGATGATGTTGGAGTCCGAGGATCGTGGTCCAAATGCTTACACTTATAGTGCTCTGGCTGCAGACAAGGATCCCAATTTCCATGGGATTGCTAAGGAGCTTGTGATGGGGAAAGGGATGCTTTTAAATACATACTTGATGTCATTGTTTTGGTGCTACTGTGGGTGTGAACTAGGATTTGTAGTTGAAATTAAGGTAACCATGGATTGCTCAAAGTCTCTCAACCCTATACCATTGATCCTTGGAAACGTGTATGGTAGGAGATTAAGGGATATTACTACTATGGCAAGAAAAGCCTCCAAATCCAAGAGTAAGACTAAGCCGAAGGCTAACACCGCTGAGGAGAAAGAGGGTTTATTAGATGAGATAGAGGGTTTATTAGAGATTGAAAATGTCTACGACCCAATTCCACCTCCTTACAAACAGGGCTTTGACCCCATTGTGGTCTTTCCAAACGACCCCATGGACTTGGGACAAGTCTACGACAAGGTGAACTTCAACGCCGCCGGCGTCCTCTTCAGTGTTGTTAAGATGCTTGAGGGTCTTTCGATGGATGGCTACGACCGTGAGGCTGCGGAGATTGGGACTGAGGTCATGGGAAAGGGTAACATGCCTGGGGTGGTGATCTTCACCGGCGTCATTGAGGAGTATGCGGACATGGGCAGGACCTTGGATGCTCTCAAGGCTTATAAGAGGATGTTGGCTTCTAAGGTCACCCCCAATGCTTATACTTACAGTGTTTTGATTGAGACTCTGGCCGGGGACGCTGATCCGAAGTTCCTTGTTGTTGCGAAGAAGTACATGCTGGAGATGATGGGGATGGGGATGAGGCCTAATGCTCTGACTTATACGGCGGTGTTTAAGGGGTTTGCGCAGCGAGGGAAGACAGAGGAGGCTAGGCAGTTTCTGGAGGACATGAAGGCCAAGGGGTTTGAGCCGGATGAGAAGGCTGTGAGGGAGGTTCTTATGGGGAGAAGGGGGCCTATGGTTAGAAGTCTCTTCAACATCCTCTTCGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

48.7

Weight (kDa)

5.18

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 304 - 352 1.7e-09 PPR repeat family
PPR_long PF17177 324 - 413 5.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 377 - 414 2.2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
Acc16I TGCGCA 1 cut(s) 1170
AccI GTMKAC 2 cut(s) 693, 777
AccIII TCCGGA 1 cut(s) 297
AciI CCGC 6 cut(s) 170, 633, 801, 872, 950, 1151
AclI AACGTT 1 cut(s) 66
AclWI GGATC 5 cut(s) 327, 362, 375, 529, 1061
AcoI YGGCCR 1 cut(s) 1053
AcuI CTGAAG 1 cut(s) 799
AcyI GRCGYC 2 cut(s) 807, 933
AfaI GTAC 2 cut(s) 43, 1097
AfiI CCNNNNNNNGG 1 cut(s) 739
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 6 cut(s) 86, 113, 485, 686, 796, 1300
AjnI CCWGG 1 cut(s) 910
AluBI AGCT 2 cut(s) 15, 397
AluI AGCT 2 cut(s) 15, 397
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 3 cut(s) 519, 1040, 1298
AlwI GGATC 5 cut(s) 327, 362, 375, 529, 1061
AlwNI CAGNNNCTG 1 cut(s) 1204
Ama87I CYCGRG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 297
AoxI GGCC 5 cut(s) 128, 1053, 1127, 1218, 1277
ApeKI GCWGC 3 cut(s) 356, 869, 1171
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 6 cut(s) 124, 129, 146, 326, 963, 1277
AsuC2I CCSGG 2 cut(s) 224, 1057
AsuHPI GGTGA 4 cut(s) 799, 919, 931, 1003
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 4 cut(s) 124, 146, 326, 963
BamHI GGATCC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 1187
Bbv12I GWGCWC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 343, 856, 1183
BccI CCATC 6 cut(s) 140, 397, 841, 845, 1105, 1111
BceAI ACGGC 1 cut(s) 1164
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 2 cut(s) 224, 1057
BcoDI GTCTC 3 cut(s) 519, 1040, 1298
BfaI CTAG 2 cut(s) 470, 1194
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 4 cut(s) 357, 801, 870, 1172
BlsI GCNGC 4 cut(s) 358, 802, 871, 1173
Bme1390I CCNGG 3 cut(s) 224, 912, 1057
Bme18I GGWCC 4 cut(s) 124, 146, 326, 963
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 6 cut(s) 124, 129, 146, 326, 963, 1277
BmiI GGNNCC 2 cut(s) 369, 1278
BmrFI CCNGG 3 cut(s) 224, 912, 1057
BmsI GCATC 3 cut(s) 405, 819, 961
BoxI GACNNNNGTC 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 1187
BpmI CTGGAG 2 cut(s) 1124, 1226
Bpu10I CCTNAGC 2 cut(s) 390, 636
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 854, 962
BpuMI CCSGG 2 cut(s) 224, 1057
BsaHI GRCGYC 2 cut(s) 807, 933
BsaWI WCCGGW 2 cut(s) 239, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse118I RCCGGY 4 cut(s) 126, 266, 803, 929
BseAI TCCGGA 1 cut(s) 297
BseBI CCWGG 1 cut(s) 912
BseGI GGATG 9 cut(s) 306, 420, 856, 976, 999, 1122, 1128, 1243, 1302
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMII CTCAG 2 cut(s) 627, 876
BseRI GAGGAG 3 cut(s) 653, 956, 1202
BseXI GCAGC 3 cut(s) 343, 856, 1183
Bsh1285I CGRYCG 1 cut(s) 862
BshFI GGCC 5 cut(s) 130, 1055, 1129, 1220, 1279
BsiEI CGRYCG 1 cut(s) 862
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 9 cut(s) 127, 224, 240, 267, 298, 804, 930, 1056, 1235
BslFI GGGAC 3 cut(s) 783, 895, 1073
BslI CCNNNNNNNGG 1 cut(s) 739
BsmAI GTCTC 3 cut(s) 519, 1040, 1298
BsmFI GGGAC 3 cut(s) 783, 895, 1073
BsnI GGCC 5 cut(s) 130, 1055, 1129, 1220, 1279
BsoBI CYCGRG 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 352
Bsp13I TCCGGA 1 cut(s) 297
Bsp143I GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
Bsp19I CCATGG 3 cut(s) 379, 498, 759
BspACI CCGC 6 cut(s) 170, 633, 801, 872, 950, 1151
BspANI GGCC 5 cut(s) 130, 1055, 1129, 1220, 1279
BspCNI CTCAG 2 cut(s) 628, 877
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 369, 1278
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 5 cut(s) 327, 362, 375, 529, 1061
BspT104I TTCGAA 1 cut(s) 180
BsrFI RCCGGY 4 cut(s) 126, 266, 803, 929
BssAI RCCGGY 4 cut(s) 126, 266, 803, 929
BssMI GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
BssNI GRCGYC 2 cut(s) 807, 933
BssT1I CCWWGG 6 cut(s) 379, 498, 538, 759, 966, 1221
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 3 cut(s) 458, 863, 1034
Bst6I CTCTTC 3 cut(s) 818, 1301, 1313
BstACI GRCGYC 2 cut(s) 807, 933
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 7, 258, 268, 805
BstDEI CTNAG 5 cut(s) 390, 615, 636, 885, 1005
BstDSI CCRYGG 3 cut(s) 379, 498, 759
BstEII GGTNACC 2 cut(s) 493, 1009
BstF5I GGATG 9 cut(s) 306, 420, 856, 976, 999, 1122, 1128, 1243, 1302
BstHHI GCGC 1 cut(s) 1171
BstKTI GATC 7 cut(s) 39, 54, 322, 370, 537, 924, 1069
BstMAI GTCTC 3 cut(s) 519, 1040, 1298
BstMBI GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
BstMCI CGRYCG 1 cut(s) 862
BstMWI GCNNNNNNNGC 5 cut(s) 356, 590, 632, 980, 1061
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 3 cut(s) 260, 910, 1102
BstPAI GACNNNNGTC 1 cut(s) 887
BstPI GGTNACC 2 cut(s) 493, 1009
BstSCI CCNGG 3 cut(s) 222, 910, 1055
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 343, 856, 1183
BstV2I GAAGAC 1 cut(s) 1187
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 5 cut(s) 130, 1055, 1129, 1220, 1279
BtgI CCRYGG 3 cut(s) 379, 498, 759
BtsCI GGATG 9 cut(s) 306, 420, 856, 976, 999, 1122, 1128, 1243, 1302
BtsIMutI CAGTG 3 cut(s) 201, 823, 1039
Cac8I GCNNGC 4 cut(s) 7, 258, 268, 805
CaiI CAGNNNCTG 1 cut(s) 1204
CfoI GCGC 1 cut(s) 1171
Cfr10I RCCGGY 4 cut(s) 126, 266, 803, 929
Cfr13I GGNCC 6 cut(s) 124, 129, 146, 326, 963, 1277
CseI GACGC 3 cut(s) 796, 922, 1070
Csp6I GTAC 2 cut(s) 42, 1096
CviQI GTAC 2 cut(s) 42, 1096
DdeI CTNAG 5 cut(s) 390, 615, 636, 885, 1005
DpnI GATC 7 cut(s) 38, 53, 321, 369, 536, 923, 1068
DpnII GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
DraI TTTAAA 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 1053
Eam1104I CTCTTC 3 cut(s) 818, 1301, 1313
EarI CTCTTC 3 cut(s) 818, 1301, 1313
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 6 cut(s) 379, 498, 538, 759, 966, 1221
Eco147I AGGCCT 1 cut(s) 1129
Eco47I GGWCC 4 cut(s) 124, 146, 326, 963
Eco57I CTGAAG 1 cut(s) 799
Eco88I CYCGRG 1 cut(s) 158
Eco91I GGTNACC 2 cut(s) 493, 1009
EcoO109I RGGNCCY 2 cut(s) 963, 1277
EcoO65I GGTNACC 2 cut(s) 493, 1009
EcoRII CCWGG 1 cut(s) 910
EcoT14I CCWWGG 6 cut(s) 379, 498, 538, 759, 966, 1221
ErhI CCWWGG 6 cut(s) 379, 498, 538, 759, 966, 1221
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 776, 808
FaqI GGGAC 3 cut(s) 783, 895, 1073
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 2 cut(s) 693, 777
Fnu4HI GCNGC 4 cut(s) 357, 801, 870, 1172
FokI GGATG 9 cut(s) 313, 427, 863, 983, 1006, 1129, 1135, 1250, 1289
Fsp4HI GCNGC 4 cut(s) 357, 801, 870, 1172
FspBI CTAG 2 cut(s) 470, 1194
FspI TGCGCA 1 cut(s) 1170
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 4 cut(s) 357, 801, 870, 1172
GsuI CTGGAG 2 cut(s) 1124, 1226
HaeIII GGCC 5 cut(s) 130, 1055, 1129, 1220, 1279
HapII CCGG 9 cut(s) 127, 224, 240, 267, 298, 804, 930, 1056, 1235
HgaI GACGC 3 cut(s) 796, 922, 1070
HhaI GCGC 1 cut(s) 1171
Hin1I GRCGYC 2 cut(s) 807, 933
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HinfI GANTC 4 cut(s) 20, 243, 311, 1048
HpaII CCGG 9 cut(s) 127, 224, 240, 267, 298, 804, 930, 1056, 1235
HphI GGTGA 4 cut(s) 799, 919, 931, 1003
Hpy166II GTNNAC 4 cut(s) 467, 694, 778, 790
Hpy188I TCNGA 5 cut(s) 19, 146, 316, 1071, 1140
Hpy188III TCNNGA 3 cut(s) 49, 298, 1205
Hpy8I GTNNAC 4 cut(s) 467, 694, 778, 790
HpyAV CCTTC 4 cut(s) 616, 1210, 1237, 1266
HpyCH4III ACNGT 3 cut(s) 458, 863, 1034
HpyCH4IV ACGT 2 cut(s) 66, 546
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 356, 590, 632, 980, 1061
HpyF3I CTNAG 5 cut(s) 390, 615, 636, 885, 1005
HpySE526I ACGT 2 cut(s) 66, 546
Hsp92I GRCGYC 2 cut(s) 807, 933
HspAI GCGC 1 cut(s) 1169
Kpn2I TCCGGA 1 cut(s) 297
KroI GCCGGC 2 cut(s) 266, 803
KroNI GCCGGC 2 cut(s) 268, 805
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 3 cut(s) 343, 856, 1183
LweI GCATC 3 cut(s) 405, 819, 961
MaeI CTAG 2 cut(s) 470, 1194
MaeII ACGT 2 cut(s) 66, 546
MaeIII GTNAC 4 cut(s) 229, 493, 902, 1009
MalI GATC 7 cut(s) 38, 53, 321, 369, 536, 923, 1068
MboI GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
MboII GAAGA 6 cut(s) 805, 916, 1102, 1192, 1288, 1300
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 4 cut(s) 197, 373, 486, 702
MlyI GAGTC 2 cut(s) 320, 1042
MmeI TCCRAC 2 cut(s) 48, 288
MreI CGCCGGCG 1 cut(s) 803
MroI TCCGGA 1 cut(s) 297
MroNI GCCGGC 2 cut(s) 266, 803
MseI TTAA 5 cut(s) 422, 489, 563, 825, 1158
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 9 cut(s) 127, 224, 240, 267, 298, 804, 930, 1056, 1235
MspR9I CCNGG 3 cut(s) 224, 912, 1057
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 5 cut(s) 356, 590, 632, 980, 1061
NaeI GCCGGC 2 cut(s) 268, 805
NciI CCSGG 2 cut(s) 224, 1057
NcoI CCATGG 3 cut(s) 379, 498, 759
NdeII GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
NgoMIV GCCGGC 2 cut(s) 266, 803
NlaIV GGNNCC 2 cut(s) 369, 1278
NmuCI GTSAC 2 cut(s) 229, 1009
NsbI TGCGCA 1 cut(s) 1170
NspI RCATGY 3 cut(s) 260, 910, 1102
NspV TTCGAA 1 cut(s) 180
PaeI GCATGC 1 cut(s) 260
PceI AGGCCT 1 cut(s) 1129
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PdiI GCCGGC 2 cut(s) 268, 805
PfeI GAWTC 2 cut(s) 20, 243
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 358, 802, 871, 1173
PleI GAGTC 2 cut(s) 319, 1042
PpsI GAGTC 2 cut(s) 319, 1042
PpuMI RGGWCCY 1 cut(s) 963
PshAI GACNNNNGTC 1 cut(s) 887
PsiI TTATAA 1 cut(s) 987
Psp1406I AACGTT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 910
PspEI GGTNACC 2 cut(s) 493, 1009
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 2 cut(s) 369, 1278
PspPI GGNCC 6 cut(s) 124, 129, 146, 326, 963, 1277
PspPPI RGGWCCY 1 cut(s) 963
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 1204
PsuI RGATCY 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 2 cut(s) 43, 1097
RsaNI GTAC 2 cut(s) 42, 1096
SaqAI TTAA 5 cut(s) 422, 489, 563, 825, 1158
SatI GCNGC 4 cut(s) 357, 801, 870, 1172
Sau3AI GATC 7 cut(s) 36, 51, 319, 367, 534, 921, 1066
Sau96I GGNCC 6 cut(s) 124, 129, 146, 326, 963, 1277
SchI GAGTC 2 cut(s) 320, 1042
ScrFI CCNGG 3 cut(s) 224, 912, 1057
SduI GDGCHC 1 cut(s) 352
SfaNI GCATC 3 cut(s) 405, 819, 961
SfcI CTRYAG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 180
SgrAI CRCCGGYG 2 cut(s) 803, 929
SinI GGWCC 4 cut(s) 124, 146, 326, 963
SmlI CTYRAG 2 cut(s) 833, 977
SmoI CTYRAG 2 cut(s) 833, 977
SphI GCATGC 1 cut(s) 260
Sse9I AATT 4 cut(s) 197, 373, 486, 702
SseBI AGGCCT 1 cut(s) 1129
SsiI CCGC 6 cut(s) 170, 633, 801, 872, 950, 1151
SspMI CTAG 2 cut(s) 470, 1194
StuI AGGCCT 1 cut(s) 1129
StyD4I CCNGG 3 cut(s) 222, 910, 1055
StyI CCWWGG 6 cut(s) 379, 498, 538, 759, 966, 1221
TaaI ACNGT 3 cut(s) 458, 863, 1034
TaiI ACGT 2 cut(s) 69, 549
TaqI TCGA 2 cut(s) 180, 845
TasI AATT 4 cut(s) 197, 373, 486, 702
TatI WGTACW 2 cut(s) 41, 1095
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 2 cut(s) 20, 243
Tru1I TTAA 5 cut(s) 422, 489, 563, 825, 1158
Tru9I TTAA 5 cut(s) 422, 489, 563, 825, 1158
TscAI CASTG 3 cut(s) 208, 823, 1039
TseFI GTSAC 2 cut(s) 229, 1009
TseI GCWGC 3 cut(s) 356, 869, 1171
Tsp45I GTSAC 2 cut(s) 229, 1009
TspDTI ATGAA 1 cut(s) 1229
TspRI CASTG 3 cut(s) 208, 823, 1039
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 4 cut(s) 124, 146, 326, 963
XceI RCATGY 3 cut(s) 260, 910, 1102
XmiI GTMKAC 2 cut(s) 693, 777
XspI CTAG 2 cut(s) 470, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.