Rw3G007930

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010637
Physical Location & Seq
Reverse (-)
7380673 .. 7381428
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007930.1

Sequence Viewer

Length: 756 bp
ATGAAATTCAAGGTTGACTTCACCGGCGCCGGCACCTCAGGCGGAAAAGACGACGACAAGCCTATACTGACCTTGGGCACGGCCAAGCTCAAAGTCGACGAGGAAAACAAAACAGCCACCTTCATAGTCGACCAGTCCAAGCTCCCTGCTCGTCCCTACAGCTCCAAGCCCGAACCGATCACCGTGGGCCCGGAAGACCCTACGGACTTGCGACTAGTCTTCCAGAAGGTGGAGACCACGGAAGGCATCATCAACAATGTGGTCAAGATGTTCGACGCTCTACTCACAAAAGGCCACGAGCGCGAGGCTGCGGAGATGCATGCTCAGATCGACCAGGGTTTCATGCCGGAGGTGGTGACCTACACCGGCGTCATGGAGGAGTACGCCGGCTCCGGCAAGACAGTGGACGTTCTCAAGGTGTACCAGCGCATGTTGGACTACGGGATCAACCCTAACAGCTACACTTACAGGATTCTCATCAAGGCGCTGGCGGAAGATCCGGACTCGAAGTTTCTCGGAGATGCGAAGAAGTACCTGATGGAAATGATGGACGTGTGTTTGCGGCCCGATGCGGTTGCGTACACGGCTGTGTTTAAGGCGTTTGCTCGGCGGGAGAAGGAGGCGGAGGGGAGGAGGTTTTTGGAGGAGATGAAGGGGAAGGGGTTTGTGGCGGACGAGAAGGAAGTGAGGGAGGTTCTCAAGGGCAGAAGAGGACGTTTGGCTAAGAAAGTCATCAATCTTCTATTTGGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

251

Amino Acids

28.16

Weight (kDa)

7.69

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 111 - 163 3.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 116 - 164 9.4e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 32
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 2 cut(s) 96, 129
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 8 cut(s) 42, 311, 491, 562, 572, 610, 623, 671
AclWI GGATC 2 cut(s) 452, 491
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 27, 369
AfaI GTAC 4 cut(s) 383, 422, 533, 581
AfiI CCNNNNNNNGG 1 cut(s) 229
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 214
AjiI CACGTC 1 cut(s) 553
AjnI CCWGG 1 cut(s) 333
AleI CACNNNNGTG 1 cut(s) 587
AluBI AGCT 4 cut(s) 88, 142, 162, 459
AluI AGCT 4 cut(s) 88, 142, 162, 459
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 452, 491
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 4 cut(s) 81, 187, 292, 563
ApaI GGGCCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 4 cut(s) 29, 303, 429, 487
AspS9I GGNCC 3 cut(s) 187, 188, 564
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 13, 172, 367
AxyI CCTNAGG 1 cut(s) 37
BaeGI GKGCMC 2 cut(s) 80, 191
BanI GGYRCC 2 cut(s) 26, 32
BanII GRGCYC 1 cut(s) 191
BauI CACGAG 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 201, 211
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 532, 541
BceAI ACGGC 2 cut(s) 96, 600
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 227
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 2 cut(s) 30, 488
BisI GCNGC 2 cut(s) 309, 563
BlsI GCNGC 2 cut(s) 310, 564
Bme1390I CCNGG 2 cut(s) 191, 335
BmgBI CACGTC 1 cut(s) 553
BmgT120I GGNCC 3 cut(s) 187, 188, 564
BmiI GGNNCC 4 cut(s) 28, 34, 189, 391
BmrFI CCNGG 2 cut(s) 191, 335
BmsI GCATC 4 cut(s) 255, 306, 511, 559
BpiI GAAGAC 2 cut(s) 201, 211
BpuEI CTTGAG 2 cut(s) 398, 683
BpuMI CCSGG 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 2 cut(s) 27, 369
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 4 cut(s) 72, 183, 237, 334
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 4 cut(s) 23, 29, 365, 386
Bse1I ACTGG 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 476
BseAI TCCGGA 1 cut(s) 499
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 4 cut(s) 72, 183, 237, 334
BseJI GATNNNNATC 1 cut(s) 476
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 51, 338
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 3 cut(s) 392, 646, 659
BseSI GKGCMC 2 cut(s) 80, 191
BseXI GCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 4 cut(s) 83, 189, 294, 565
BshNI GGYRCC 2 cut(s) 26, 32
BsiSI CCGG 8 cut(s) 24, 30, 191, 347, 366, 387, 393, 500
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 4 cut(s) 83, 189, 294, 565
Bso31I GGTCTC 1 cut(s) 227
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 80, 191
Bsp13I TCCGGA 1 cut(s) 499
Bsp143I GATC 4 cut(s) 177, 327, 444, 496
BspACI CCGC 8 cut(s) 42, 311, 491, 562, 572, 610, 623, 671
BspANI GGCC 4 cut(s) 83, 189, 294, 565
BspCNI CTCAG 2 cut(s) 50, 337
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 28, 34, 189, 391
BspPI GGATC 2 cut(s) 452, 491
BspT107I GGYRCC 2 cut(s) 26, 32
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 4 cut(s) 23, 29, 365, 386
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 4 cut(s) 23, 29, 365, 386
BssECI CCNNGG 4 cut(s) 72, 183, 237, 334
BssMI GATC 4 cut(s) 177, 327, 444, 496
BssNI GRCGYC 2 cut(s) 27, 369
BssSI CACGAG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 184, 403
Bst6I CTCTTC 1 cut(s) 703
BstACI GRCGYC 2 cut(s) 27, 369
BstC8I GCNNGC 4 cut(s) 31, 321, 388, 489
BstDEI CTNAG 3 cut(s) 37, 324, 723
BstDSI CCRYGG 2 cut(s) 183, 237
BstEII GGTNACC 1 cut(s) 355
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 2 cut(s) 30, 488
BstHHI GCGC 4 cut(s) 29, 303, 429, 487
BstKTI GATC 4 cut(s) 180, 330, 447, 499
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 4 cut(s) 177, 327, 444, 496
BstMWI GCNNNNNNNGC 3 cut(s) 39, 300, 584
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 2 cut(s) 323, 433
BstPI GGTNACC 1 cut(s) 355
BstSCI CCNGG 2 cut(s) 189, 333
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 2 cut(s) 80, 191
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 2 cut(s) 201, 211
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
Bsu36I CCTNAGG 1 cut(s) 37
BsuRI GGCC 4 cut(s) 83, 189, 294, 565
BtgI CCRYGG 2 cut(s) 183, 237
BtrI CACGTC 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 4 cut(s) 31, 321, 388, 489
CfoI GCGC 4 cut(s) 29, 303, 429, 487
Cfr10I RCCGGY 4 cut(s) 23, 29, 365, 386
Cfr13I GGNCC 3 cut(s) 187, 188, 564
CseI GACGC 2 cut(s) 284, 358
Csp6I GTAC 4 cut(s) 382, 421, 532, 580
CviAII CATG 4 cut(s) 320, 343, 373, 430
CviQI GTAC 4 cut(s) 382, 421, 532, 580
DdeI CTNAG 3 cut(s) 37, 324, 723
DinI GGCGCC 1 cut(s) 28
DpnI GATC 4 cut(s) 179, 329, 446, 498
DpnII GATC 4 cut(s) 177, 327, 444, 496
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 703
EciI GGCGGA 4 cut(s) 57, 506, 638, 686
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 227
Eco81I CCTNAGG 1 cut(s) 37
Eco91I GGTNACC 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 191
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 323, 346, 376, 433
FaiI YATR 6 cut(s) 65, 125, 321, 344, 374, 431
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 138
FatI CATG 4 cut(s) 319, 342, 372, 429
FauI CCCGC 1 cut(s) 603
FblI GTMKAC 2 cut(s) 96, 129
Fnu4HI GCNGC 2 cut(s) 309, 563
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 309, 563
FspBI CTAG 1 cut(s) 215
GlaI GCGC 4 cut(s) 28, 302, 428, 486
GluI GCNGC 2 cut(s) 309, 563
HaeII RGCGCY 2 cut(s) 30, 488
HaeIII GGCC 4 cut(s) 83, 189, 294, 565
HapII CCGG 8 cut(s) 24, 30, 191, 347, 366, 387, 393, 500
HgaI GACGC 2 cut(s) 284, 358
HhaI GCGC 4 cut(s) 29, 303, 429, 487
Hin1I GRCGYC 2 cut(s) 27, 369
Hin1II CATG 4 cut(s) 323, 346, 376, 433
Hin6I GCGC 4 cut(s) 27, 301, 427, 485
HinP1I GCGC 4 cut(s) 27, 301, 427, 485
HincII GTYRAC 3 cut(s) 16, 97, 130
HindII GTYRAC 3 cut(s) 16, 97, 130
HinfI GANTC 2 cut(s) 472, 503
HpaII CCGG 8 cut(s) 24, 30, 191, 347, 366, 387, 393, 500
HphI GGTGA 3 cut(s) 13, 172, 367
Hpy166II GTNNAC 6 cut(s) 16, 97, 130, 406, 421, 582
Hpy188I TCNGA 2 cut(s) 327, 518
Hpy188III TCNNGA 3 cut(s) 223, 265, 500
Hpy8I GTNNAC 6 cut(s) 16, 97, 130, 406, 421, 582
Hpy99I CGWCG 3 cut(s) 56, 101, 278
HpyAV CCTTC 7 cut(s) 130, 220, 236, 610, 646, 652, 673
HpyCH4III ACNGT 2 cut(s) 184, 403
HpyCH4IV ACGT 3 cut(s) 408, 552, 715
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 300, 584
HpyF3I CTNAG 3 cut(s) 37, 324, 723
HpySE526I ACGT 3 cut(s) 408, 552, 715
Hsp92I GRCGYC 2 cut(s) 27, 369
Hsp92II CATG 4 cut(s) 323, 346, 376, 433
HspAI GCGC 4 cut(s) 27, 301, 427, 485
KasI GGCGCC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 499
KroI GCCGGC 2 cut(s) 29, 386
KroNI GCCGGC 2 cut(s) 31, 388
Kzo9I GATC 4 cut(s) 177, 327, 444, 496
LmnI GCTCC 3 cut(s) 147, 167, 395
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 4 cut(s) 255, 306, 511, 559
MaeI CTAG 1 cut(s) 215
MaeII ACGT 3 cut(s) 408, 552, 715
MaeIII GTNAC 1 cut(s) 355
MalI GATC 4 cut(s) 179, 329, 446, 498
MboI GATC 4 cut(s) 177, 327, 444, 496
MboII GAAGA 6 cut(s) 206, 211, 506, 538, 720, 731
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 2 cut(s) 80, 191
MluCI AATT 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 414
Mph1103I ATGCAT 1 cut(s) 321
MroI TCCGGA 1 cut(s) 499
MroNI GCCGGC 2 cut(s) 29, 386
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 587
MspI CCGG 8 cut(s) 24, 30, 191, 347, 366, 387, 393, 500
MspR9I CCNGG 2 cut(s) 191, 335
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 39, 300, 584
NaeI GCCGGC 2 cut(s) 31, 388
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 1 cut(s) 191
NdeII GATC 4 cut(s) 177, 327, 444, 496
NgoMIV GCCGGC 2 cut(s) 29, 386
NlaIII CATG 4 cut(s) 323, 346, 376, 433
NlaIV GGNNCC 4 cut(s) 28, 34, 189, 391
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 321
NspI RCATGY 2 cut(s) 323, 433
OliI CACNNNNGTG 1 cut(s) 587
PaeI GCATGC 1 cut(s) 323
PdiI GCCGGC 2 cut(s) 31, 388
PfeI GAWTC 1 cut(s) 472
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 2 cut(s) 310, 564
PleI GAGTC 1 cut(s) 497
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 4 cut(s) 28, 34, 189, 391
PspOMI GGGCCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 187, 188, 564
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 4 cut(s) 383, 422, 533, 581
RsaNI GTAC 4 cut(s) 382, 421, 532, 580
RseI CAYNNNNRTG 1 cut(s) 587
SalI GTCGAC 2 cut(s) 95, 128
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 2 cut(s) 309, 563
Sau3AI GATC 4 cut(s) 177, 327, 444, 496
Sau96I GGNCC 3 cut(s) 187, 188, 564
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 2 cut(s) 191, 335
SduI GDGCHC 2 cut(s) 80, 191
SfaNI GCATC 4 cut(s) 255, 306, 511, 559
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 28
SgrAI CRCCGGYG 2 cut(s) 23, 365
SmiMI CAYNNNNRTG 1 cut(s) 587
SmlI CTYRAG 2 cut(s) 413, 698
SmoI CTYRAG 2 cut(s) 413, 698
SpeI ACTAGT 1 cut(s) 214
SphI GCATGC 1 cut(s) 323
Sse9I AATT 1 cut(s) 5
SsiI CCGC 8 cut(s) 42, 311, 491, 562, 572, 610, 623, 671
SspDI GGCGCC 1 cut(s) 26
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 189, 333
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 184, 403
TaiI ACGT 3 cut(s) 411, 555, 718
TaqI TCGA 5 cut(s) 96, 129, 273, 330, 506
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 4 cut(s) 17, 112, 331, 665
TspGWI ACGGA 2 cut(s) 218, 254
TspRI CASTG 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 5
XceI RCATGY 2 cut(s) 323, 433
XmiI GTMKAC 2 cut(s) 96, 129
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.