Rh3AG092400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010637
Physical Location & Seq
Reverse (-)
7555087 .. 7556792
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG092400.1

Sequence Viewer

Length: 594 bp
ATGATGAAATTCAAGGTTGACTTCACCGGCGCCGGCAGCTCAGGCGGAAAAGACGACGACAAGCCTATACTGACCTTGGGCACGGCCAAGCTCAAAGTCGACGAGGAAAACAAAACAGCCACCTTCATAGTCGACCAGTCCAAGCTCCCTGCTCGTCCCTACAGCTCCAAGCCCGAACCGATCACCGTGGGCCCGGAAGACCCTACGGACTTGCGACAAGTCTTCCAGAAGGTGGAGACCACCGAAGGCATCATCAACAATGTGGTCAAGATGTTCGACGCTCTACTCACAAAAGGCCACGAGCGCGAGGCTGCGGAGATGCATGCTCAGATCGACCAGGGTTTCATGCCGGAGGTGGTGACCTACACCGGCGTCATGGAGGAGTACGCCGGCGCCGGCAAGACAGTGGACGTTCTCAAGCCATACATGTCGACCAGCCAACCCAACATGGCTAAGGTAAGGGAGGTTTTGCAGGAGATCAAGAAAGATATGGGGACTGATCAGGGTGAGGGGAAGGCTCTCAGAGGAAGCAGGAAAAGACCTCCGTTGGTTAGAAGAATTTACAAGATTCTCGTTGGCAAGAAGCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

197

Amino Acids

21.8

Weight (kDa)

8.6

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 29, 392
AccB7I CCANNNNNTGG 1 cut(s) 232
AccI GTMKAC 3 cut(s) 99, 132, 431
AccII CGCG 1 cut(s) 306
AciI CCGC 2 cut(s) 45, 314
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 2 cut(s) 8, 558
AcyI GRCGYC 3 cut(s) 30, 372, 393
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 5 cut(s) 39, 91, 145, 165, 586
AluI AGCT 5 cut(s) 39, 91, 145, 165, 586
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 3 cut(s) 84, 190, 295
ApaI GGGCCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 36, 311
ApoI RAATTY 2 cut(s) 8, 558
AspLEI GCGC 3 cut(s) 32, 306, 395
AspS9I GGNCC 2 cut(s) 190, 191
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 16, 175, 370, 518
BaeGI GKGCMC 2 cut(s) 83, 194
BanI GGYRCC 2 cut(s) 29, 392
BanII GRGCYC 1 cut(s) 194
BauI CACGAG 1 cut(s) 299
BbsI GAAGAC 2 cut(s) 204, 214
BbvI GCAGC 2 cut(s) 48, 298
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 338
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 2 cut(s) 33, 396
BisI GCNGC 2 cut(s) 37, 312
BlsI GCNGC 2 cut(s) 38, 313
Bme1390I CCNGG 2 cut(s) 194, 338
BmgT120I GGNCC 2 cut(s) 190, 191
BmiI GGNNCC 3 cut(s) 31, 192, 394
BmrFI CCNGG 2 cut(s) 194, 338
BmsI GCATC 2 cut(s) 258, 309
BpiI GAAGAC 2 cut(s) 204, 214
Bpu10I CCTNAGC 2 cut(s) 40, 453
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 194
BsaHI GRCGYC 3 cut(s) 30, 372, 393
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 75, 186, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 5 cut(s) 26, 32, 368, 389, 395
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 3 cut(s) 75, 186, 337
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 54, 341, 535
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 2 cut(s) 83, 194
BseXI GCAGC 2 cut(s) 48, 298
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 3 cut(s) 86, 192, 297
BshNI GGYRCC 2 cut(s) 29, 392
BsiSI CCGG 7 cut(s) 27, 33, 194, 350, 369, 390, 396
BslFI GGGAC 2 cut(s) 141, 508
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 141, 508
BsnI GGCC 3 cut(s) 86, 192, 297
Bso31I GGTCTC 1 cut(s) 230
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 83, 194
Bsp143I GATC 4 cut(s) 180, 330, 477, 499
BspACI CCGC 2 cut(s) 45, 314
BspANI GGCC 3 cut(s) 86, 192, 297
BspCNI CTCAG 3 cut(s) 53, 340, 534
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 31, 192, 394
BspT107I GGYRCC 2 cut(s) 29, 392
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 5 cut(s) 26, 32, 368, 389, 395
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 5 cut(s) 26, 32, 368, 389, 395
BssECI CCNNGG 3 cut(s) 75, 186, 337
BssMI GATC 4 cut(s) 180, 330, 477, 499
BssNI GRCGYC 3 cut(s) 30, 372, 393
BssSI CACGAG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 187, 406
BstACI GRCGYC 3 cut(s) 30, 372, 393
BstC8I GCNNGC 4 cut(s) 34, 324, 391, 397
BstDEI CTNAG 4 cut(s) 40, 327, 453, 521
BstDSI CCRYGG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 358
BstFNI CGCG 1 cut(s) 306
BstH2I RGCGCY 2 cut(s) 33, 396
BstHHI GCGC 3 cut(s) 32, 306, 395
BstKTI GATC 4 cut(s) 183, 333, 480, 502
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 4 cut(s) 180, 330, 477, 499
BstMWI GCNNNNNNNGC 3 cut(s) 36, 42, 303
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 2 cut(s) 326, 430
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 192, 336
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 2 cut(s) 83, 194
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 48, 298
BstV2I GAAGAC 2 cut(s) 204, 214
BsuRI GGCC 3 cut(s) 86, 192, 297
BtgI CCRYGG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 4 cut(s) 34, 324, 391, 397
CfoI GCGC 3 cut(s) 32, 306, 395
Cfr10I RCCGGY 5 cut(s) 26, 32, 368, 389, 395
Cfr13I GGNCC 2 cut(s) 190, 191
CseI GACGC 2 cut(s) 287, 361
Csp6I GTAC 1 cut(s) 385
CviAII CATG 5 cut(s) 323, 346, 376, 427, 448
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 4 cut(s) 40, 327, 453, 521
DinI GGCGCC 2 cut(s) 31, 394
DpnI GATC 4 cut(s) 182, 332, 479, 501
DpnII GATC 4 cut(s) 180, 330, 477, 499
EaeI YGGCCR 1 cut(s) 84
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 194
EgeI GGCGCC 2 cut(s) 31, 394
EheI GGCGCC 2 cut(s) 31, 394
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 5 cut(s) 326, 349, 379, 430, 451
FaiI YATR 9 cut(s) 68, 128, 324, 347, 377, 424, 428, 449, 491
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 2 cut(s) 141, 508
FatI CATG 5 cut(s) 322, 345, 375, 426, 447
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 3 cut(s) 99, 132, 431
Fnu4HI GCNGC 2 cut(s) 37, 312
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 37, 312
GlaI GCGC 3 cut(s) 31, 305, 394
GluI GCNGC 2 cut(s) 37, 312
HaeII RGCGCY 2 cut(s) 33, 396
HaeIII GGCC 3 cut(s) 86, 192, 297
HapII CCGG 7 cut(s) 27, 33, 194, 350, 369, 390, 396
HgaI GACGC 2 cut(s) 287, 361
HhaI GCGC 3 cut(s) 32, 306, 395
Hin1I GRCGYC 3 cut(s) 30, 372, 393
Hin1II CATG 5 cut(s) 326, 349, 379, 430, 451
Hin6I GCGC 3 cut(s) 30, 304, 393
HinP1I GCGC 3 cut(s) 30, 304, 393
HincII GTYRAC 4 cut(s) 19, 100, 133, 432
HindII GTYRAC 4 cut(s) 19, 100, 133, 432
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 1 cut(s) 568
HpaII CCGG 7 cut(s) 27, 33, 194, 350, 369, 390, 396
HphI GGTGA 4 cut(s) 16, 175, 370, 518
Hpy166II GTNNAC 5 cut(s) 19, 100, 133, 409, 432
Hpy188I TCNGA 2 cut(s) 330, 524
Hpy188III TCNNGA 3 cut(s) 226, 268, 481
Hpy8I GTNNAC 5 cut(s) 19, 100, 133, 409, 432
Hpy99I CGWCG 3 cut(s) 59, 104, 281
HpyAV CCTTC 4 cut(s) 133, 223, 239, 508
HpyCH4III ACNGT 2 cut(s) 187, 406
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 322, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 42, 303
HpyF3I CTNAG 4 cut(s) 40, 327, 453, 521
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 3 cut(s) 30, 372, 393
Hsp92II CATG 5 cut(s) 326, 349, 379, 430, 451
HspAI GCGC 3 cut(s) 30, 304, 393
KasI GGCGCC 2 cut(s) 29, 392
KroI GCCGGC 3 cut(s) 32, 389, 395
KroNI GCCGGC 3 cut(s) 34, 391, 397
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 4 cut(s) 180, 330, 477, 499
LmnI GCTCC 2 cut(s) 150, 170
Lsp1109I GCAGC 2 cut(s) 48, 298
LweI GCATC 2 cut(s) 258, 309
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 358
MalI GATC 4 cut(s) 182, 332, 479, 501
MboI GATC 4 cut(s) 180, 330, 477, 499
MboII GAAGA 3 cut(s) 209, 214, 567
MhlI GDGCHC 2 cut(s) 83, 194
MluCI AATT 2 cut(s) 8, 558
Mly113I GGCGCC 2 cut(s) 30, 393
MnlI CCTC 8 cut(s) 97, 301, 346, 373, 457, 502, 518, 552
Mph1103I ATGCAT 1 cut(s) 324
MreI CGCCGGCG 1 cut(s) 389
MroNI GCCGGC 3 cut(s) 32, 389, 395
MseI TTAA 1 cut(s) 592
MspI CCGG 7 cut(s) 27, 33, 194, 350, 369, 390, 396
MspR9I CCNGG 2 cut(s) 194, 338
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 36, 42, 303
NaeI GCCGGC 3 cut(s) 34, 391, 397
NarI GGCGCC 2 cut(s) 30, 393
NciI CCSGG 1 cut(s) 194
NdeII GATC 4 cut(s) 180, 330, 477, 499
NgoMIV GCCGGC 3 cut(s) 32, 389, 395
NlaIII CATG 5 cut(s) 326, 349, 379, 430, 451
NlaIV GGNNCC 3 cut(s) 31, 192, 394
NmuCI GTSAC 1 cut(s) 358
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 2 cut(s) 326, 430
PaeI GCATGC 1 cut(s) 326
PciI ACATGT 1 cut(s) 426
PdiI GCCGGC 3 cut(s) 34, 391, 397
PfeI GAWTC 1 cut(s) 568
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 2 cut(s) 38, 313
PluTI GGCGCC 2 cut(s) 33, 396
PscI ACATGT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 31, 192, 394
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 190, 191
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SalI GTCGAC 3 cut(s) 98, 131, 430
SaqAI TTAA 1 cut(s) 592
SatI GCNGC 2 cut(s) 37, 312
Sau3AI GATC 4 cut(s) 180, 330, 477, 499
Sau96I GGNCC 2 cut(s) 190, 191
ScrFI CCNGG 2 cut(s) 194, 338
SduI GDGCHC 2 cut(s) 83, 194
SfaNI GCATC 2 cut(s) 258, 309
SfcI CTRYAG 1 cut(s) 160
SfoI GGCGCC 2 cut(s) 31, 394
SgrAI CRCCGGYG 3 cut(s) 26, 368, 389
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SphI GCATGC 1 cut(s) 326
Sse9I AATT 2 cut(s) 8, 558
SsiI CCGC 2 cut(s) 45, 314
SspDI GGCGCC 2 cut(s) 29, 392
StyD4I CCNGG 2 cut(s) 192, 336
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 187, 406
TaiI ACGT 1 cut(s) 414
TaqI TCGA 5 cut(s) 99, 132, 276, 333, 431
TasI AATT 2 cut(s) 8, 558
TfiI GAWTC 1 cut(s) 568
Tru1I TTAA 1 cut(s) 592
Tru9I TTAA 1 cut(s) 592
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 36, 311
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 20, 115, 334
TspGWI ACGGA 2 cut(s) 221, 534
TspRI CASTG 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 232
XapI RAATTY 2 cut(s) 8, 558
XceI RCATGY 2 cut(s) 326, 430
XmiI GTMKAC 3 cut(s) 99, 132, 431
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.