Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010637

Physical Location & Seq

Genomic Coordinates Forward (+)

42072765 .. 42073382

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGACCAGAAACTCCCAACCCAAGGTCCACATCCACAACCCCAAAGATAGGCTCAAGTCTACAACAAGGTCAATCGATTCGACTCCGGCCTCAGTGCTAATGGTTTGCTCATTGACGGCTGCAAGCGCCAGGCTAGGGAGATTGGGTCTGAGGTCATCCAAACCGGAGGTTGTGATTTTCAAAGCTGTAGTTGAGGAATGTACGGCAATGGGCCGGACCTTGGATGCTCTGAAGGCCTCCAAGAGGATGCTGGCATCGAGGGTCGCGGCGAATACTTATACTTATGGAGTTCTGATTGATGCTCTGGCTGCGGATTCTGATCCGGTGTTTCATGGTGTGGCCAAGAAGTACATGCTGGAGATGATGGGGATGGGGCCAAATGTTGTGACTTATATGGTGGTGTTTAAGGGGTTTTCGCAGCGGGGGAAGGTGGAGGAGGCGAAGGAGTTTCTGGAGGATATGAAGGCCAAGGGGTTTGTGCCGGAACGGAAGGCTGTGAAGGTGGTGCTTATGGGAAGAAGGGGACCTGTAGTGAAAAGCCTCATCAACATTCTCTTTGGAGTAGATTTAATGCTTATTGGTTTTGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

199

Amino Acids

21.6

Weight (kDa)

9.97

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	127 - 162	1.5e-08	PPR repeat family
PPR	PF01535	130 - 160	2.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08870 FvH4_6g08940
rosa_chinensis	RchiOBHm_Chr3g0459161 RchiOBHm_Chr3g0459221
rosa_laevigata	RLG00000025102 RLG00000025107 RLG00000025115
rosa_multiflora	Rmu_sc0002435.1_g000017 Rmu_sc0014208.1_g000002 Rmu_sc0036446.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420400 Rroxscaffold_6G00420460
rosa_rugosa	Rorug03G0034000 Rorug03G0034300
rosa_samantha	Rh3AG092000 Rh3AG092400 Rh3CG095800 Rh3CG096300
rosa_wichuraiana	Rw3G007880 Rw3G007930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	1 cut(s)	269
AciI	CCGC	3 cut(s)	269, 314, 424
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	205, 353
AfiI	CCNNNNNNNGG	5 cut(s)	25, 51, 138, 223, 246
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	6 cut(s)	90, 214, 237, 342, 377, 468
ApeKI	GCWGC	3 cut(s)	122, 311, 421
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	5 cut(s)	28, 214, 219, 377, 527
AvaII	GGWCC	3 cut(s)	28, 219, 527
BalI	TGGCCA	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	109, 298, 433
BccI	CCATC	2 cut(s)	361, 367
BceAI	ACGGC	2 cut(s)	135, 222
BciT130I	CCWGG	1 cut(s)	133
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	189, 531
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	4 cut(s)	123, 270, 312, 422
BlsI	GCNGC	4 cut(s)	124, 271, 313, 423
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	3 cut(s)	28, 219, 527
BmgT120I	GGNCC	5 cut(s)	28, 214, 219, 377, 527
BmiI	GGNNCC	2 cut(s)	378, 528
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	4 cut(s)	217, 240, 266, 292
BpmI	CTGGAG	2 cut(s)	380, 476
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	24, 222, 471
BsaWI	WCCGGW	2 cut(s)	166, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 51, 138, 223, 246
Bse3DI	GCAATG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	24, 222, 471
BseGI	GGATG	5 cut(s)	33, 158, 232, 255, 378
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	5 cut(s)	25, 51, 138, 223, 246
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	108, 143
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	3 cut(s)	109, 298, 433
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	6 cut(s)	92, 216, 239, 344, 379, 470
BshVI	ATCGAT	1 cut(s)	78
BsiSI	CCGG	5 cut(s)	89, 167, 217, 326, 485
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	5 cut(s)	25, 51, 138, 223, 246
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	6 cut(s)	92, 216, 239, 344, 379, 470
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	3 cut(s)	269, 314, 424
BspANI	GGCC	6 cut(s)	92, 216, 239, 344, 379, 470
BspCNI	CTCAG	2 cut(s)	107, 144
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	378, 528
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	24, 222, 471
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	3 cut(s)	24, 222, 471
Bst2UI	CCWGG	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	127, 255
BstDEI	CTNAG	2 cut(s)	94, 152
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	5 cut(s)	33, 158, 232, 255, 378
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 236, 311
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	2 cut(s)	189, 531
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	109, 298, 433
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	6 cut(s)	92, 216, 239, 344, 379, 470
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	5 cut(s)	33, 158, 232, 255, 378
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	127, 255
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	5 cut(s)	28, 214, 219, 377, 527
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	204, 352
CviAII	CATG	3 cut(s)	335, 355, 594
CviQI	GTAC	2 cut(s)	204, 352
DdeI	CTNAG	2 cut(s)	94, 152
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	3 cut(s)	24, 222, 471
Eco147I	AGGCCT	1 cut(s)	239
Eco47I	GGWCC	3 cut(s)	28, 219, 527
Eco57I	CTGAAG	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	3 cut(s)	24, 222, 471
ErhI	CCWWGG	3 cut(s)	24, 222, 471
FaeI	CATG	3 cut(s)	338, 358, 597
FaiI	YATR	9 cut(s)	282, 288, 336, 356, 396, 398, 464, 515, 595
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	3 cut(s)	334, 354, 593
FauI	CCCGC	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	123, 270, 312, 422
FokI	GGATG	5 cut(s)	20, 145, 239, 262, 385
Fsp4HI	GCNGC	4 cut(s)	123, 270, 312, 422
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	123, 270, 312, 422
GsuI	CTGGAG	2 cut(s)	380, 476
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	6 cut(s)	92, 216, 239, 344, 379, 470
HapII	CCGG	5 cut(s)	89, 167, 217, 326, 485
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	338, 358, 597
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	3 cut(s)	80, 85, 317
HpaII	CCGG	5 cut(s)	89, 167, 217, 326, 485
Hpy166II	GTNNAC	2 cut(s)	31, 63
Hpy188I	TCNGA	4 cut(s)	153, 234, 297, 322
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	2 cut(s)	31, 63
HpyAV	CCTTC	7 cut(s)	229, 424, 439, 460, 487, 496, 516
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 236, 311
HpyF3I	CTNAG	2 cut(s)	94, 152
Hsp92II	CATG	3 cut(s)	338, 358, 597
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	322
Lsp1109I	GCAGC	3 cut(s)	109, 298, 433
LweI	GCATC	4 cut(s)	217, 240, 266, 292
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	79
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	2 cut(s)	408, 572
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	5 cut(s)	89, 167, 217, 326, 485
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	128, 236, 311
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	3 cut(s)	338, 358, 597
NlaIV	GGNNCC	2 cut(s)	378, 528
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	80, 317
PkrI	GCNGC	4 cut(s)	124, 271, 313, 423
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	378, 528
PspPI	GGNCC	5 cut(s)	28, 214, 219, 377, 527
PspPPI	RGGWCCY	1 cut(s)	527
RsaI	GTAC	2 cut(s)	205, 353
RsaNI	GTAC	2 cut(s)	204, 352
SaqAI	TTAA	2 cut(s)	408, 572
SatI	GCNGC	4 cut(s)	123, 270, 312, 422
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	5 cut(s)	28, 214, 219, 377, 527
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	9 cut(s)	30, 74, 158, 174, 190, 224, 435, 507, 532
SfaNI	GCATC	4 cut(s)	217, 240, 266, 292
SfcI	CTRYAG	2 cut(s)	189, 531
SinI	GGWCC	3 cut(s)	28, 219, 527
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	269, 314, 424
SspMI	CTAG	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	3 cut(s)	24, 222, 471
TaqI	TCGA	3 cut(s)	78, 83, 260
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	80, 317
Tru1I	TTAA	2 cut(s)	408, 572
Tru9I	TTAA	2 cut(s)	408, 572
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	122, 311, 421
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	323, 479
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	3 cut(s)	28, 219, 527
XagI	CCTNNNNNAGG	1 cut(s)	244
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.