Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010637

Physical Location & Seq

Genomic Coordinates Forward (+)

41998836 .. 41999594

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATGAAATTCAAGGTTGACTTCACCGGCGCCGGCAGCTCAGGCGGAAAAGACGACGACAAGCCTATACTGACCTTGGGCACGGCCAAGCTCAAAGTCGACGAGGAAAACAAAACAGCCACCTTCATAGTCGACCAGTCCAAGCTCCCTGCTCGTCCTTACAGCTCCGAGCCCGAACCGATCACCGTGGGCCCGGAAGACCCTACGGACTTGCGACAAGTCTTCCAGAAGGTGGAGACCACCGAAGGCATCATCAACAATGTGGTCAAGATGTTCGACGCTCTACTCGCAAAAGGCCACGAGCGCGAGGCTGCGGAGATGCACGCTCAGATCGACCAGGGTCTCATGCCGGAGGTGGTGACCTACACCGGCGTCATGGAGGAGTACGCTGGCGCAGGCAAGACAGTGGATGTTCTCAAGGTGTACCAGCGCATGTTGGACTACGGGATCAACCCTAACAGCTACACTTACAGGGTTCTCATCAAGGCGCTGGCGGAAGATCCGGACTCGAAGTTTCTCGGAGATGCGAAGAAGTACCTGATGGAAATGATGGACGTGTGTTTGCGGCCCGATGCGGTTGCGTACACGGCTGTGTTTAAGGCGTTTGCTCGGCGGGAGAAGGAGGCGGAGGGGAGGAGGTTTTTGGCGGAGATGAAGGGGAAGGGGTTTGTAGCGGACGAGAAGGAAGTGAGGGAGGTTCTCAAGGGCAGAAGAGGACGTTTGGCTAAGAAGGTCATCAACCTTCTATTTGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

253

Amino Acids

28.14

Weight (kDa)

6.78

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	112 - 164	1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	117 - 165	2.8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08870 FvH4_6g08940
rosa_chinensis	RchiOBHm_Chr3g0459161 RchiOBHm_Chr3g0459221
rosa_laevigata	RLG00000025102 RLG00000025107 RLG00000025115
rosa_multiflora	Rmu_sc0002435.1_g000017 Rmu_sc0014208.1_g000002 Rmu_sc0036446.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420400 Rroxscaffold_6G00420460
rosa_rugosa	Rorug03G0034000 Rorug03G0034300
rosa_samantha	Rh3AG092000 Rh3AG092400 Rh3CG095800 Rh3CG096300
rosa_wichuraiana	Rw3G007880 Rw3G007930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	2 cut(s)	99, 132
AccII	CGCG	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	9 cut(s)	45, 314, 494, 565, 575, 613, 626, 647, 674
AclWI	GGATC	2 cut(s)	455, 494
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	8
AcyI	GRCGYC	2 cut(s)	30, 372
AfaI	GTAC	4 cut(s)	386, 425, 536, 584
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	336
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	5 cut(s)	39, 91, 145, 165, 462
AluI	AGCT	5 cut(s)	39, 91, 145, 165, 462
Alw26I	GTCTC	2 cut(s)	230, 347
AlwI	GGATC	2 cut(s)	455, 494
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	4 cut(s)	84, 190, 295, 566
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	36, 311
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	5 cut(s)	32, 306, 395, 432, 490
AspS9I	GGNCC	3 cut(s)	190, 191, 567
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	16, 175, 370
BaeGI	GKGCMC	2 cut(s)	83, 194
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	174, 194
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	204, 214
BbvI	GCAGC	2 cut(s)	48, 298
BccI	CCATC	2 cut(s)	535, 544
BceAI	ACGGC	2 cut(s)	99, 603
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	230, 347
BfoI	RGCGCY	2 cut(s)	33, 491
BisI	GCNGC	3 cut(s)	37, 312, 566
BlsI	GCNGC	3 cut(s)	38, 313, 567
Bme1390I	CCNGG	2 cut(s)	194, 338
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	190, 191, 567
BmiI	GGNNCC	2 cut(s)	31, 192
BmrFI	CCNGG	2 cut(s)	194, 338
BmsI	GCATC	4 cut(s)	258, 309, 514, 562
BoxI	GACNNNNGTC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	204, 214
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	401, 686
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	30, 372
BsaI	GGTCTC	2 cut(s)	230, 347
BsaJI	CCNNGG	3 cut(s)	75, 186, 337
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	3 cut(s)	26, 32, 368
Bse1I	ACTGG	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	75, 186, 337
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	54, 341
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	395, 649
BseSI	GKGCMC	2 cut(s)	83, 194
BseXI	GCAGC	2 cut(s)	48, 298
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	86, 192, 297, 568
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	6 cut(s)	27, 33, 194, 350, 369, 503
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	230, 347
BsnI	GGCC	4 cut(s)	86, 192, 297, 568
Bso31I	GGTCTC	2 cut(s)	230, 347
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	3 cut(s)	83, 174, 194
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	180, 330, 447, 499
BspACI	CCGC	9 cut(s)	45, 314, 494, 565, 575, 613, 626, 647, 674
BspANI	GGCC	4 cut(s)	86, 192, 297, 568
BspCNI	CTCAG	2 cut(s)	53, 340
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	31, 192
BspPI	GGATC	2 cut(s)	455, 494
BspT107I	GGYRCC	1 cut(s)	29
BspTNI	GGTCTC	2 cut(s)	230, 347
BsrFI	RCCGGY	3 cut(s)	26, 32, 368
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	3 cut(s)	26, 32, 368
BssECI	CCNNGG	3 cut(s)	75, 186, 337
BssMI	GATC	4 cut(s)	180, 330, 447, 499
BssNI	GRCGYC	2 cut(s)	30, 372
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	187, 406
Bst6I	CTCTTC	1 cut(s)	706
BstACI	GRCGYC	2 cut(s)	30, 372
BstC8I	GCNNGC	5 cut(s)	34, 324, 391, 397, 492
BstDEI	CTNAG	3 cut(s)	40, 327, 726
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	2 cut(s)	33, 491
BstHHI	GCGC	5 cut(s)	32, 306, 395, 432, 490
BstKTI	GATC	4 cut(s)	183, 333, 450, 502
BstMAI	GTCTC	2 cut(s)	230, 347
BstMBI	GATC	4 cut(s)	180, 330, 447, 499
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 42, 287, 303, 587
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	192, 336
BstSLI	GKGCMC	2 cut(s)	83, 194
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	48, 298
BstV2I	GAAGAC	2 cut(s)	204, 214
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	86, 192, 297, 568
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	5 cut(s)	34, 324, 391, 397, 492
CfoI	GCGC	5 cut(s)	32, 306, 395, 432, 490
Cfr10I	RCCGGY	3 cut(s)	26, 32, 368
Cfr13I	GGNCC	3 cut(s)	190, 191, 567
CseI	GACGC	2 cut(s)	287, 361
Csp6I	GTAC	4 cut(s)	385, 424, 535, 583
CviAII	CATG	3 cut(s)	346, 376, 433
CviQI	GTAC	4 cut(s)	385, 424, 535, 583
DdeI	CTNAG	3 cut(s)	40, 327, 726
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	4 cut(s)	182, 332, 449, 501
DpnII	GATC	4 cut(s)	180, 330, 447, 499
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	706
EciI	GGCGGA	4 cut(s)	60, 509, 641, 662
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	174, 194
Eco31I	GGTCTC	2 cut(s)	230, 347
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	174, 194
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	349, 379, 436
FaiI	YATR	5 cut(s)	68, 128, 347, 377, 434
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	3 cut(s)	345, 375, 432
FauI	CCCGC	1 cut(s)	606
FblI	GTMKAC	2 cut(s)	99, 132
Fnu4HI	GCNGC	3 cut(s)	37, 312, 566
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	2 cut(s)	174, 194
Fsp4HI	GCNGC	3 cut(s)	37, 312, 566
GlaI	GCGC	5 cut(s)	31, 305, 394, 431, 489
GluI	GCNGC	3 cut(s)	37, 312, 566
HaeII	RGCGCY	2 cut(s)	33, 491
HaeIII	GGCC	4 cut(s)	86, 192, 297, 568
HapII	CCGG	6 cut(s)	27, 33, 194, 350, 369, 503
HgaI	GACGC	2 cut(s)	287, 361
HhaI	GCGC	5 cut(s)	32, 306, 395, 432, 490
Hin1I	GRCGYC	2 cut(s)	30, 372
Hin1II	CATG	3 cut(s)	349, 379, 436
Hin6I	GCGC	5 cut(s)	30, 304, 393, 430, 488
HinP1I	GCGC	5 cut(s)	30, 304, 393, 430, 488
HincII	GTYRAC	3 cut(s)	19, 100, 133
HindII	GTYRAC	3 cut(s)	19, 100, 133
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	6 cut(s)	27, 33, 194, 350, 369, 503
HphI	GGTGA	3 cut(s)	16, 175, 370
Hpy166II	GTNNAC	5 cut(s)	19, 100, 133, 424, 585
Hpy188I	TCNGA	3 cut(s)	169, 330, 521
Hpy188III	TCNNGA	3 cut(s)	226, 268, 503
Hpy8I	GTNNAC	5 cut(s)	19, 100, 133, 424, 585
Hpy99I	CGWCG	3 cut(s)	59, 104, 281
HpyAV	CCTTC	9 cut(s)	133, 223, 239, 613, 649, 655, 676, 724, 752
HpyCH4III	ACNGT	2 cut(s)	187, 406
HpyCH4IV	ACGT	2 cut(s)	555, 718
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 42, 287, 303, 587
HpyF3I	CTNAG	3 cut(s)	40, 327, 726
HpySE526I	ACGT	2 cut(s)	555, 718
Hsp92I	GRCGYC	2 cut(s)	30, 372
Hsp92II	CATG	3 cut(s)	349, 379, 436
HspAI	GCGC	5 cut(s)	30, 304, 393, 430, 488
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	502
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	180, 330, 447, 499
LmnI	GCTCC	2 cut(s)	150, 170
Lsp1109I	GCAGC	2 cut(s)	48, 298
LweI	GCATC	4 cut(s)	258, 309, 514, 562
MaeII	ACGT	2 cut(s)	555, 718
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	182, 332, 449, 501
MboI	GATC	4 cut(s)	180, 330, 447, 499
MboII	GAAGA	5 cut(s)	209, 214, 509, 541, 723
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	83, 174, 194
MluCI	AATT	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	417
MroI	TCCGGA	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	590
MspI	CCGG	6 cut(s)	27, 33, 194, 350, 369, 503
MspR9I	CCNGG	2 cut(s)	194, 338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	5 cut(s)	36, 42, 287, 303, 587
NaeI	GCCGGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	4 cut(s)	180, 330, 447, 499
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	3 cut(s)	349, 379, 436
NlaIV	GGNNCC	2 cut(s)	31, 192
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	436
OliI	CACNNNNGTG	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	38, 313, 567
PleI	GAGTC	1 cut(s)	500
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	500
PshAI	GACNNNNGTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	31, 192
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	190, 191, 567
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	4 cut(s)	386, 425, 536, 584
RsaNI	GTAC	4 cut(s)	385, 424, 535, 583
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	2 cut(s)	98, 131
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	3 cut(s)	37, 312, 566
Sau3AI	GATC	4 cut(s)	180, 330, 447, 499
Sau96I	GGNCC	3 cut(s)	190, 191, 567
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	194, 338
SduI	GDGCHC	3 cut(s)	83, 174, 194
SfaNI	GCATC	4 cut(s)	258, 309, 514, 562
SfoI	GGCGCC	1 cut(s)	31
SgrAI	CRCCGGYG	2 cut(s)	26, 368
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	416, 701
SmoI	CTYRAG	2 cut(s)	416, 701
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	9 cut(s)	45, 314, 494, 565, 575, 613, 626, 647, 674
SspDI	GGCGCC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	192, 336
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	187, 406
TaiI	ACGT	2 cut(s)	558, 721
TaqI	TCGA	5 cut(s)	99, 132, 276, 333, 509
TasI	AATT	1 cut(s)	8
TauI	GCSGC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	36, 311
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	20, 115, 668
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	411
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	436
XmiI	GTMKAC	2 cut(s)	99, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.