Rorug03G0034300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010637
Physical Location & Seq
Forward (+)
2757888 .. 2758832
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0034300.1

Sequence Viewer

Length: 573 bp
ATGGCCGATTCAACCAAACCCACCGCCGCCGTCGCCGCCGCGAAGCCCTACAACCCCTACCAAGACCTCGAAGCTCCGATCAAGAGGCTCTACTACCTCCCAACCTCGCCGGAGCACCTCTATCCCGAAAAAGCTCCAAAACCCTACCGTCCCTTTGGAGACAACCTCGTGAGCTGCACCGGCATTTGCTACCTCTCAGGCCGGACCGCCGGACTCGTCCACGGCGGTGTTCGGGGACTCAAGGCCGCCGGCGCCGGCGAGCCTCGGAGGGTCAGAATGAGCAGGGCTTTGAGCTCTGGGGGCGAGTTGGGTCGGAGGTACTCGAACGCTATGGGGATTGTTGGGTTGTATTTCTCTGTGATTGAGGGTTGTATTAACTGTTACAGGGGTAAAGATGGGATCTTGAACACTGGTGTTGCTGGATTTGGGGCTGGGGTGGTGTACAAGGCGGCGCGTGGGCCGAGGGCGGCGGCGCTTGCGGGGGTGATCGGTGGTGCTGCGGCTGTGCCGGCGGTTTCGGGGAAAATGGCGGTGAAGAAGTATGTGGGAGAATTGGGTATTTGGGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

190

Amino Acids

19.76

Weight (kDa)

9.77

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 57 - 168 6e-19 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 2 cut(s) 41, 454
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 2 cut(s) 320, 443
AgsI TTSAA 2 cut(s) 12, 406
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 4 cut(s) 74, 134, 174, 294
AluI AGCT 4 cut(s) 74, 134, 174, 294
Alw21I GWGCWC 2 cut(s) 117, 296
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 407
AoxI GGCC 4 cut(s) 3, 199, 243, 458
ApeKI GCWGC 2 cut(s) 174, 497
AspLEI GCGC 3 cut(s) 254, 454, 475
AspS9I GGNCC 2 cut(s) 204, 458
AsuHPI GGTGA 2 cut(s) 496, 544
AvaII GGWCC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 296
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 2 cut(s) 117, 296
BbvI GCAGC 2 cut(s) 161, 484
BccI CCATC 1 cut(s) 389
BceAI ACGGC 2 cut(s) 14, 238
BcoDI GTCTC 1 cut(s) 153
BfoI RGCGCY 2 cut(s) 255, 476
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 204, 458
BmiI GGNNCC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 220, 263, 461
Bse118I RCCGGY 4 cut(s) 179, 248, 254, 508
Bse1I ACTGG 1 cut(s) 415
BseDI CCNNGG 3 cut(s) 220, 263, 461
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 161, 484
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 2 cut(s) 41, 454
BshFI GGCC 4 cut(s) 5, 201, 245, 460
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 117, 296
BsiSI CCGG 7 cut(s) 110, 180, 202, 210, 249, 255, 509
BslFI GGGAC 2 cut(s) 135, 249
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 2 cut(s) 135, 249
BsnI GGCC 4 cut(s) 5, 201, 245, 460
Bsp1286I GDGCHC 2 cut(s) 117, 296
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 3 cut(s) 78, 399, 486
BspANI GGCC 4 cut(s) 5, 201, 245, 460
BspCNI CTCAG 1 cut(s) 209
BspFNI CGCG 2 cut(s) 41, 454
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 4 cut(s) 179, 248, 254, 508
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 4 cut(s) 179, 248, 254, 508
BssECI CCNNGG 3 cut(s) 220, 263, 461
BssMI GATC 3 cut(s) 78, 399, 486
BssNI GRCGYC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 149, 380
BstACI GRCGYC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 5 cut(s) 250, 256, 260, 477, 510
BstDEI CTNAG 1 cut(s) 196
BstDSI CCRYGG 1 cut(s) 220
BstFNI CGCG 2 cut(s) 41, 454
BstH2I RGCGCY 2 cut(s) 255, 476
BstHHI GCGC 3 cut(s) 254, 454, 475
BstKTI GATC 3 cut(s) 81, 402, 489
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 78, 399, 486
BstMWI GCNNNNNNNGC 7 cut(s) 32, 35, 180, 251, 300, 476, 509
BstUI CGCG 2 cut(s) 41, 454
BstV1I GCAGC 2 cut(s) 161, 484
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BsuRI GGCC 4 cut(s) 5, 201, 245, 460
BtgI CCRYGG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 5 cut(s) 250, 256, 260, 477, 510
CfoI GCGC 3 cut(s) 254, 454, 475
Cfr10I RCCGGY 4 cut(s) 179, 248, 254, 508
Cfr13I GGNCC 2 cut(s) 204, 458
CpoI CGGWCCG 1 cut(s) 204
Csp6I GTAC 2 cut(s) 319, 442
CspI CGGWCCG 1 cut(s) 204
CviQI GTAC 2 cut(s) 319, 442
DdeI CTNAG 1 cut(s) 196
DinI GGCGCC 1 cut(s) 253
DpnI GATC 3 cut(s) 80, 401, 488
DpnII GATC 3 cut(s) 78, 399, 486
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 296
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
FaiI YATR 2 cut(s) 332, 543
FaqI GGGAC 2 cut(s) 135, 249
FauI CCCGC 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 296
GlaI GCGC 3 cut(s) 253, 453, 474
GsaI CCCAGC 1 cut(s) 435
HaeII RGCGCY 2 cut(s) 255, 476
HaeIII GGCC 4 cut(s) 5, 201, 245, 460
HapII CCGG 7 cut(s) 110, 180, 202, 210, 249, 255, 509
HhaI GCGC 3 cut(s) 254, 454, 475
Hin1I GRCGYC 1 cut(s) 252
Hin6I GCGC 3 cut(s) 252, 452, 473
HinP1I GCGC 3 cut(s) 252, 452, 473
HinfI GANTC 3 cut(s) 8, 213, 237
HpaII CCGG 7 cut(s) 110, 180, 202, 210, 249, 255, 509
HphI GGTGA 2 cut(s) 496, 544
Hpy166II GTNNAC 2 cut(s) 220, 442
Hpy188I TCNGA 4 cut(s) 78, 267, 275, 315
Hpy188III TCNNGA 4 cut(s) 82, 125, 169, 403
Hpy8I GTNNAC 2 cut(s) 220, 442
Hpy99I CGWCG 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 149, 380
HpyCH4V TGCA 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 35, 180, 251, 300, 476, 509
HpyF3I CTNAG 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 252
HspAI GCGC 3 cut(s) 252, 452, 473
KasI GGCGCC 1 cut(s) 251
KroI GCCGGC 3 cut(s) 248, 254, 508
KroNI GCCGGC 3 cut(s) 250, 256, 510
Kzo9I GATC 3 cut(s) 78, 399, 486
LmnI GCTCC 3 cut(s) 79, 112, 139
Lsp1109I GCAGC 2 cut(s) 161, 484
MaeIII GTNAC 1 cut(s) 380
MalI GATC 3 cut(s) 80, 401, 488
MboI GATC 3 cut(s) 78, 399, 486
MboII GAAGA 1 cut(s) 547
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 117, 296
MluCI AATT 1 cut(s) 551
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 2 cut(s) 207, 231
MmeI TCCRAC 1 cut(s) 293
MreI CGCCGGCG 2 cut(s) 248, 254
MroNI GCCGGC 3 cut(s) 248, 254, 508
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 7 cut(s) 110, 180, 202, 210, 249, 255, 509
MvnI CGCG 2 cut(s) 41, 454
MwoI GCNNNNNNNGC 7 cut(s) 32, 35, 180, 251, 300, 476, 509
NaeI GCCGGC 3 cut(s) 250, 256, 510
NarI GGCGCC 1 cut(s) 252
NdeII GATC 3 cut(s) 78, 399, 486
NgoMIV GCCGGC 3 cut(s) 248, 254, 508
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 486
OliI CACNNNNGTG 1 cut(s) 225
PdiI GCCGGC 3 cut(s) 250, 256, 510
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 2 cut(s) 207, 231
PluTI GGCGCC 1 cut(s) 255
PpsI GAGTC 2 cut(s) 207, 231
Psp124BI GAGCTC 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 204, 458
PsuI RGATCY 1 cut(s) 399
RsaI GTAC 2 cut(s) 320, 443
RsaNI GTAC 2 cut(s) 319, 442
RseI CAYNNNNRTG 1 cut(s) 225
Rsr2I CGGWCCG 1 cut(s) 204
RsrII CGGWCCG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 3 cut(s) 78, 399, 486
Sau96I GGNCC 2 cut(s) 204, 458
SchI GAGTC 2 cut(s) 207, 231
SduI GDGCHC 2 cut(s) 117, 296
SfoI GGCGCC 1 cut(s) 253
SgrAI CRCCGGYG 2 cut(s) 248, 254
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 551
SspDI GGCGCC 1 cut(s) 251
SstI GAGCTC 1 cut(s) 296
TaaI ACNGT 2 cut(s) 149, 380
TaqI TCGA 2 cut(s) 69, 323
TasI AATT 1 cut(s) 551
TatI WGTACW 1 cut(s) 441
TauI GCSGC 8 cut(s) 29, 38, 41, 248, 452, 470, 473, 503
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 415
TseI GCWGC 2 cut(s) 174, 497
TspRI CASTG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.