Rh3CG095800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010637
Physical Location & Seq
Reverse (-)
7525111 .. 7526467
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG095800.1

Sequence Viewer

Length: 720 bp
ATGACAAGAAAAACCTCTAAATCCAAGAGCAAGACAAAGGCGAAGGCTAACACTTCCGAGGAGATAGAGAGTTTATTAGAGATTGACAATGTCTACGACCCGGTTCCTCCTCCTTACCAACAGGGGCCCGAGCCCATTTTGGTCTGTCCAAATGACCCCAAGGACTTGGCAGAAGTCTACGAGAAGGTGAACTTCTATGCCTCCGGCGCTATCTTGAGTGTTGTGAAGATGGTTGAGGGTCTGTCGATGGATGGCTACAACCTTGAGGCTGCGGAGATTGGGGCTGAGGTCATGGACAAGGGTAACATGCCTGGGGTGGTGGTCTTCACCGGCATCATTGAGGAGTATGAGAAAATGGGCAGGACCTTGGATGCTCTCAAGGCATACAAGAGGATGTTGGCCTCTAAGGTCACACCCAATTCTTACACTTACAGTATTCTAATTGAGACTCTGGCCGGAGACGCTGATCCGAAGTTCCTTGTTGTTGCTAAGAAGTACATGCTGGAGATGATGGGGATGGGAATGAAGCCCAATGCATTGACTTATACTGCGGTGTTTAAGGGGTTTGCGCAGCGGGGGAAGACAGAGGAGGCGAAGCAGTTCCTGGAGGACATGAAAGCGAAGGGGTTTGAGCCGGACGAGAAGGCTGTAAGGGAGGTTCTTATGGGAAGAAGGGGACCTATGGTTAGAAGCCTCTTCAACATCCTCTTTGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

239

Amino Acids

26.54

Weight (kDa)

6.48

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 104 - 152 7.5e-11 PPR repeat family
PPR_long PF17177 124 - 216 1.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 173 - 206 2.9e-06 PPR repeat
PPR_2 PF13041 177 - 214 9.7e-09 PPR repeat family
PPR PF01535 181 - 210 5.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 570
AccI GTMKAC 2 cut(s) 93, 177
AciI CCGC 3 cut(s) 272, 551, 574
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 453
AfaI GTAC 1 cut(s) 497
AgsI TTSAA 1 cut(s) 700
AjnI CCWGG 2 cut(s) 310, 603
Alw26I GTCTC 2 cut(s) 440, 453
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 604
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 3 cut(s) 125, 399, 453
ApaI GGGCCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 269, 571
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 2 cut(s) 209, 571
AspS9I GGNCC 4 cut(s) 125, 126, 363, 677
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 199, 319
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 2 cut(s) 363, 677
BaeGI GKGCMC 1 cut(s) 129
BanII GRGCYC 2 cut(s) 129, 135
BbsI GAAGAC 2 cut(s) 316, 587
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 256, 583
BccI CCATC 5 cut(s) 223, 241, 245, 505, 511
BciT130I CCWGG 2 cut(s) 312, 605
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 440, 453
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 2 cut(s) 270, 572
BlsI GCNGC 2 cut(s) 271, 573
Bme1390I CCNGG 3 cut(s) 101, 312, 605
Bme18I GGWCC 2 cut(s) 363, 677
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 4 cut(s) 125, 126, 363, 677
BmiI GGNNCC 4 cut(s) 105, 126, 127, 678
BmrFI CCNGG 3 cut(s) 101, 312, 605
BmsI GCATC 2 cut(s) 342, 361
BpiI GAAGAC 2 cut(s) 316, 587
BpmI CTGGAG 2 cut(s) 524, 626
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 3 cut(s) 235, 284, 362
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 57, 159, 311, 366
Bse118I RCCGGY 1 cut(s) 329
BseBI CCWGG 2 cut(s) 312, 605
BseDI CCNNGG 4 cut(s) 57, 159, 311, 366
BseGI GGATG 5 cut(s) 256, 376, 399, 522, 702
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 4 cut(s) 74, 99, 356, 602
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 256, 583
BshFI GGCC 3 cut(s) 127, 401, 455
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 5 cut(s) 101, 204, 330, 456, 635
BslFI GGGAC 1 cut(s) 690
BsmAI GTCTC 2 cut(s) 440, 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 690
BsnI GGCC 3 cut(s) 127, 401, 455
BsoBI CYCGRG 1 cut(s) 128
Bsp120I GGGCCC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 129, 135
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 3 cut(s) 272, 551, 574
BspANI GGCC 3 cut(s) 127, 401, 455
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 105, 126, 127, 678
BspPI GGATC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 4 cut(s) 57, 159, 311, 366
BssMI GATC 1 cut(s) 466
BssT1I CCWWGG 2 cut(s) 159, 366
Bst2UI CCWGG 2 cut(s) 312, 605
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 701
BstDEI CTNAG 3 cut(s) 285, 405, 489
BstF5I GGATG 5 cut(s) 256, 376, 399, 522, 702
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 571
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 2 cut(s) 440, 453
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 3 cut(s) 206, 380, 461
BstNI CCWGG 2 cut(s) 312, 605
BstNSI RCATGY 2 cut(s) 310, 502
BstSCI CCNGG 3 cut(s) 99, 310, 603
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 256, 583
BstV2I GAAGAC 2 cut(s) 316, 587
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuRI GGCC 3 cut(s) 127, 401, 455
BtsCI GGATG 5 cut(s) 256, 376, 399, 522, 702
CaiI CAGNNNCTG 1 cut(s) 604
CfoI GCGC 2 cut(s) 209, 571
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 4 cut(s) 125, 126, 363, 677
CseI GACGC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 496
CviAII CATG 4 cut(s) 292, 307, 499, 613
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 285, 405, 489
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 2 cut(s) 159, 366
Eco24I GRGCYC 2 cut(s) 129, 135
Eco47I GGWCC 2 cut(s) 363, 677
Eco88I CYCGRG 1 cut(s) 128
EcoO109I RGGNCCY 3 cut(s) 125, 363, 677
EcoRII CCWGG 2 cut(s) 310, 603
EcoT14I CCWWGG 2 cut(s) 159, 366
EcoT22I ATGCAT 1 cut(s) 538
EcoT38I GRGCYC 2 cut(s) 129, 135
ErhI CCWWGG 2 cut(s) 159, 366
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 4 cut(s) 295, 310, 502, 616
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 1 cut(s) 690
FatI CATG 4 cut(s) 291, 306, 498, 612
FauI CCCGC 1 cut(s) 567
FblI GTMKAC 2 cut(s) 93, 177
Fnu4HI GCNGC 2 cut(s) 270, 572
FokI GGATG 5 cut(s) 263, 383, 406, 529, 689
FriOI GRGCYC 2 cut(s) 129, 135
Fsp4HI GCNGC 2 cut(s) 270, 572
FspI TGCGCA 1 cut(s) 570
GlaI GCGC 2 cut(s) 208, 570
GluI GCNGC 2 cut(s) 270, 572
GsuI CTGGAG 2 cut(s) 524, 626
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 127, 401, 455
HapII CCGG 5 cut(s) 101, 204, 330, 456, 635
HgaI GACGC 1 cut(s) 470
HhaI GCGC 2 cut(s) 209, 571
Hin1II CATG 4 cut(s) 295, 310, 502, 616
Hin6I GCGC 2 cut(s) 207, 569
HinP1I GCGC 2 cut(s) 207, 569
HinfI GANTC 1 cut(s) 448
HpaII CCGG 5 cut(s) 101, 204, 330, 456, 635
HphI GGTGA 2 cut(s) 199, 319
Hpy166II GTNNAC 3 cut(s) 94, 178, 190
Hpy188I TCNGA 2 cut(s) 58, 471
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 3 cut(s) 94, 178, 190
HpyAV CCTTC 5 cut(s) 37, 178, 616, 637, 666
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 1 cut(s) 536
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 380, 461
HpyF3I CTNAG 3 cut(s) 285, 405, 489
Hsp92II CATG 4 cut(s) 295, 310, 502, 616
HspAI GCGC 2 cut(s) 207, 569
Kzo9I GATC 1 cut(s) 466
Lsp1109I GCAGC 2 cut(s) 256, 583
LweI GCATC 2 cut(s) 342, 361
MaeIII GTNAC 2 cut(s) 302, 409
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 5 cut(s) 238, 316, 592, 681, 688
MhlI GDGCHC 2 cut(s) 129, 135
MluCI AATT 2 cut(s) 418, 441
MlyI GAGTC 1 cut(s) 442
Mph1103I ATGCAT 1 cut(s) 538
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 5 cut(s) 101, 204, 330, 456, 635
MspR9I CCNGG 3 cut(s) 101, 312, 605
MvaI CCWGG 2 cut(s) 312, 605
MwoI GCNNNNNNNGC 3 cut(s) 206, 380, 461
NciI CCSGG 1 cut(s) 101
NdeII GATC 1 cut(s) 466
NlaIII CATG 4 cut(s) 295, 310, 502, 616
NlaIV GGNNCC 4 cut(s) 105, 126, 127, 678
NmuCI GTSAC 1 cut(s) 409
NsbI TGCGCA 1 cut(s) 570
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 2 cut(s) 310, 502
PdmI GAANNNNTTC 1 cut(s) 599
PflFI GACNNNGTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 603
PkrI GCNGC 2 cut(s) 271, 573
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 2 cut(s) 363, 677
Psp5II RGGWCCY 2 cut(s) 363, 677
Psp6I CCWGG 2 cut(s) 310, 603
PspGI CCWGG 2 cut(s) 310, 603
PspN4I GGNNCC 4 cut(s) 105, 126, 127, 678
PspOMI GGGCCC 1 cut(s) 125
PspPI GGNCC 4 cut(s) 125, 126, 363, 677
PspPPI RGGWCCY 2 cut(s) 363, 677
PsrI GAACNNNNNNTAC 2 cut(s) 642, 674
PstNI CAGNNNCTG 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 2 cut(s) 270, 572
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 4 cut(s) 125, 126, 363, 677
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 3 cut(s) 101, 312, 605
SduI GDGCHC 2 cut(s) 129, 135
SetI ASST 8 cut(s) 17, 189, 264, 291, 368, 411, 660, 682
SfaNI GCATC 2 cut(s) 342, 361
SinI GGWCC 2 cut(s) 363, 677
SmlI CTYRAG 3 cut(s) 214, 263, 377
SmoI CTYRAG 3 cut(s) 214, 263, 377
Sse9I AATT 2 cut(s) 418, 441
SsiI CCGC 3 cut(s) 272, 551, 574
StyD4I CCNGG 3 cut(s) 99, 310, 603
StyI CCWWGG 2 cut(s) 159, 366
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 245
TasI AATT 2 cut(s) 418, 441
TatI WGTACW 1 cut(s) 495
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 269, 571
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 539, 629
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 363, 677
XceI RCATGY 2 cut(s) 310, 502
XmiI GTMKAC 2 cut(s) 93, 177
XmnI GAANNNNTTC 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.