Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010637

Physical Location & Seq

Genomic Coordinates Reverse (-)

5294532 .. 5295311

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATGAGTAAGATGAGAATCAACTCATTCAAGGTTAACTTCACCACCGCTGGCAGCTCAGGCGCAAAAGTCGACGACAACAATCCTATTCTCACCTTGGGCACCGCCAAGCTCCAAGTCGACGAGGAAACCAAAACAGGCACCTTCCTAGTCGACAAGTCCAAGCTCCCTGCTCGTCCTTACAGCTCCGAACCCGAACCGATCCTCGTGGGCCCGGAGGACCCGACGGATCTGCAACAAGTCATCCGGAAGGTGGAGTCCTCCGAATGCATTCTCAGCAATGTGGTCAAGATGTATGACGCTCTATTCACAGAAGGCCACGAGTTCGAGTTTACGGAGATGAAAGCTCATATCGACCAGGGTTTCTTGCCGATGGTGGTGGTCTACACCGGCGTCATGGAGGAGTACGCCGCCGCCGGAAAGACGAGGGATGTTCTCAAGGTGTACCGGCGCATGTTGAACTACGGGATCAGCCCTAACAGCTACACTTACAGGATTCTCATCAAGGCACTGGCGGATGATCCGGACGTCAAGTTTCTCGAAGATGCGAAGAAGTACCTGATGGAGATGATGGACATGGCGTTGCGTCCCGATGCGGTGGCGTACACGGCTGTGTTCAAGGCGTTTGCTCGTCGGGAGAAGGTGGTGGAGGGGAGGAGGTTTTTGGAGGAGATGAAGCGGAAGGGGTTTGTGGCGGAGGAGAATCAAGTAAGGGAGGTTCTCGACGGCAGGAAAGGACGTATAGTCAAGAATCTCTTCGACATTCTATTTGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

260

Amino Acids

29.44

Weight (kDa)

6.78

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	119 - 171	8.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	124 - 172	9.9e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08870 FvH4_6g08940
rosa_chinensis	RchiOBHm_Chr3g0459161 RchiOBHm_Chr3g0459221
rosa_laevigata	RLG00000025102 RLG00000025107 RLG00000025115
rosa_multiflora	Rmu_sc0002435.1_g000017 Rmu_sc0014208.1_g000002 Rmu_sc0036446.1_g000001
rosa_roxburghii	Rroxscaffold_6G00420400 Rroxscaffold_6G00420460
rosa_rugosa	Rorug03G0034000 Rorug03G0034300
rosa_samantha	Rh3AG092000 Rh3AG092400 Rh3CG095800 Rh3CG096300
rosa_wichuraiana	Rw3G007880 Rw3G007930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	531
AccB1I	GGYRCC	2 cut(s)	101, 140
AccI	GTMKAC	4 cut(s)	72, 120, 153, 384
AccIII	TCCGGA	2 cut(s)	246, 523
AciI	CCGC	8 cut(s)	48, 105, 411, 414, 515, 596, 679, 695
AclWI	GGATC	4 cut(s)	196, 237, 476, 515
AcyI	GRCGYC	2 cut(s)	393, 528
AfaI	GTAC	4 cut(s)	407, 446, 557, 605
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	31, 460, 619
AhdI	GACNNNNNGTC	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	357
AleI	CACNNNNGTG	1 cut(s)	611
AluBI	AGCT	6 cut(s)	57, 112, 166, 186, 347, 483
AluI	AGCT	6 cut(s)	57, 112, 166, 186, 347, 483
AlwI	GGATC	4 cut(s)	196, 237, 476, 515
Aor13HI	TCCGGA	2 cut(s)	246, 523
AoxI	GGCC	2 cut(s)	211, 316
ApaI	GGGCCC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	54
ArsI	GACNNNNNNTTYG	1 cut(s)	752
Asp700I	GAANNNNTTC	2 cut(s)	270, 755
AspLEI	GCGC	2 cut(s)	65, 453
AspS9I	GGNCC	3 cut(s)	211, 212, 220
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	34, 85
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	2 cut(s)	104, 215
BanI	GGYRCC	2 cut(s)	101, 140
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	2 cut(s)	206, 320
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	3 cut(s)	367, 556, 565
BceAI	ACGGC	2 cut(s)	624, 742
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	55, 411, 414
BlsI	GCNGC	3 cut(s)	56, 412, 415
Bme1390I	CCNGG	2 cut(s)	215, 359
Bme18I	GGWCC	1 cut(s)	220
BmeRI	GACNNNNNGTC	1 cut(s)	743
BmgT120I	GGNCC	3 cut(s)	211, 212, 220
BmiI	GGNNCC	4 cut(s)	103, 142, 213, 222
BmrFI	CCNGG	2 cut(s)	215, 359
BmsI	GCATC	2 cut(s)	535, 583
Bpu10I	CCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	215
BsaBI	GATNNNNATC	2 cut(s)	17, 500
BsaHI	GRCGYC	2 cut(s)	393, 528
BsaJI	CCNNGG	2 cut(s)	96, 358
BsaWI	WCCGGW	2 cut(s)	246, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	2 cut(s)	389, 447
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	2 cut(s)	17, 500
BseAI	TCCGGA	2 cut(s)	246, 523
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	96, 358
BseGI	GGATG	3 cut(s)	243, 436, 523
BseJI	GATNNNNATC	2 cut(s)	17, 500
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	72, 289
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	4 cut(s)	416, 670, 683, 713
BseSI	GKGCMC	2 cut(s)	104, 215
BseXI	GCAGC	1 cut(s)	66
BshFI	GGCC	2 cut(s)	213, 318
BshNI	GGYRCC	2 cut(s)	101, 140
BsiSI	CCGG	6 cut(s)	215, 247, 390, 417, 448, 524
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	2 cut(s)	270, 272
BsnI	GGCC	2 cut(s)	213, 318
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	104, 215
Bsp13I	TCCGGA	2 cut(s)	246, 523
Bsp143I	GATC	4 cut(s)	201, 229, 468, 520
BspACI	CCGC	8 cut(s)	48, 105, 411, 414, 515, 596, 679, 695
BspANI	GGCC	2 cut(s)	213, 318
BspCNI	CTCAG	2 cut(s)	71, 288
BspEI	TCCGGA	2 cut(s)	246, 523
BspLI	GGNNCC	4 cut(s)	103, 142, 213, 222
BspPI	GGATC	4 cut(s)	196, 237, 476, 515
BspT107I	GGYRCC	2 cut(s)	101, 140
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	2 cut(s)	389, 447
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	2 cut(s)	389, 447
BssECI	CCNNGG	2 cut(s)	96, 358
BssMI	GATC	4 cut(s)	201, 229, 468, 520
BssNI	GRCGYC	2 cut(s)	393, 528
BssSI	CACGAG	2 cut(s)	206, 320
BssT1I	CCWWGG	1 cut(s)	96
Bst2BI	CACGAG	2 cut(s)	206, 320
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	761
BstACI	GRCGYC	2 cut(s)	393, 528
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	58, 275
BstF5I	GGATG	3 cut(s)	243, 436, 523
BstHHI	GCGC	2 cut(s)	65, 453
BstKTI	GATC	4 cut(s)	204, 232, 471, 523
BstMBI	GATC	4 cut(s)	201, 229, 468, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 276, 480, 608
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	213, 357
BstSLI	GKGCMC	2 cut(s)	104, 215
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	213, 318
BtsCI	GGATG	3 cut(s)	243, 436, 523
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	65, 453
Cfr10I	RCCGGY	2 cut(s)	389, 447
Cfr13I	GGNCC	3 cut(s)	211, 212, 220
CseI	GACGC	3 cut(s)	308, 382, 575
Csp6I	GTAC	4 cut(s)	406, 445, 556, 604
CviAII	CATG	3 cut(s)	397, 454, 577
CviQI	GTAC	4 cut(s)	406, 445, 556, 604
DdeI	CTNAG	2 cut(s)	58, 275
DpnI	GATC	4 cut(s)	203, 231, 470, 522
DpnII	GATC	4 cut(s)	201, 229, 468, 520
DriI	GACNNNNNGTC	1 cut(s)	743
Eam1104I	CTCTTC	1 cut(s)	761
Eam1105I	GACNNNNNGTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	761
EciI	GGCGGA	2 cut(s)	530, 710
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	400, 457, 580
FaiI	YATR	6 cut(s)	297, 351, 398, 455, 578, 743
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 740, 772
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	3 cut(s)	396, 453, 576
FblI	GTMKAC	4 cut(s)	72, 120, 153, 384
Fnu4HI	GCNGC	3 cut(s)	55, 411, 414
FokI	GGATG	3 cut(s)	230, 443, 530
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	55, 411, 414
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	64, 452
GluI	GCNGC	3 cut(s)	55, 411, 414
HaeIII	GGCC	2 cut(s)	213, 318
HapII	CCGG	6 cut(s)	215, 247, 390, 417, 448, 524
HgaI	GACGC	3 cut(s)	308, 382, 575
HhaI	GCGC	2 cut(s)	65, 453
Hin1I	GRCGYC	2 cut(s)	393, 528
Hin1II	CATG	3 cut(s)	400, 457, 580
Hin6I	GCGC	2 cut(s)	63, 451
HinP1I	GCGC	2 cut(s)	63, 451
HincII	GTYRAC	4 cut(s)	37, 73, 121, 154
HindII	GTYRAC	4 cut(s)	37, 73, 121, 154
HinfI	GANTC	5 cut(s)	18, 257, 496, 703, 751
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	6 cut(s)	215, 247, 390, 417, 448, 524
HphI	GGTGA	2 cut(s)	34, 85
Hpy166II	GTNNAC	8 cut(s)	37, 73, 121, 154, 333, 385, 445, 606
Hpy188I	TCNGA	2 cut(s)	190, 265
Hpy188III	TCNNGA	8 cut(s)	247, 289, 524, 539, 590, 635, 722, 748
Hpy8I	GTNNAC	8 cut(s)	37, 73, 121, 154, 333, 385, 445, 606
Hpy99I	CGWCG	5 cut(s)	77, 125, 229, 636, 728
HpyAV	CCTTC	5 cut(s)	154, 244, 308, 634, 676
HpyCH4IV	ACGT	2 cut(s)	528, 739
HpyCH4V	TGCA	2 cut(s)	235, 270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 276, 480, 608
HpyF3I	CTNAG	2 cut(s)	58, 275
HpySE526I	ACGT	2 cut(s)	528, 739
Hsp92I	GRCGYC	2 cut(s)	393, 528
Hsp92II	CATG	3 cut(s)	400, 457, 580
HspAI	GCGC	2 cut(s)	63, 451
Kpn2I	TCCGGA	2 cut(s)	246, 523
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	201, 229, 468, 520
LmnI	GCTCC	3 cut(s)	117, 171, 191
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	2 cut(s)	535, 583
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	2 cut(s)	528, 739
MalI	GATC	4 cut(s)	203, 231, 470, 522
MboI	GATC	4 cut(s)	201, 229, 468, 520
MboII	GAAGA	3 cut(s)	554, 562, 748
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	104, 215
MlyI	GAGTC	1 cut(s)	266
Mph1103I	ATGCAT	1 cut(s)	272
MroI	TCCGGA	2 cut(s)	246, 523
MroXI	GAANNNNTTC	2 cut(s)	270, 755
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	6 cut(s)	215, 247, 390, 417, 448, 524
MspR9I	CCNGG	2 cut(s)	215, 359
Mva1269I	GAATGC	2 cut(s)	270, 272
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	4 cut(s)	60, 276, 480, 608
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	201, 229, 468, 520
NlaIII	CATG	3 cut(s)	400, 457, 580
NlaIV	GGNNCC	4 cut(s)	103, 142, 213, 222
NsiI	ATGCAT	1 cut(s)	272
NspI	RCATGY	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	611
PctI	GAATGC	2 cut(s)	270, 272
PdmI	GAANNNNTTC	2 cut(s)	270, 755
PfeI	GAWTC	4 cut(s)	18, 496, 703, 751
PkrI	GCNGC	3 cut(s)	56, 412, 415
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	4 cut(s)	103, 142, 213, 222
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	3 cut(s)	211, 212, 220
PspPPI	RGGWCCY	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	702, 734
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	4 cut(s)	407, 446, 557, 605
RsaNI	GTAC	4 cut(s)	406, 445, 556, 604
RseI	CAYNNNNRTG	1 cut(s)	611
SalI	GTCGAC	3 cut(s)	71, 119, 152
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	3 cut(s)	55, 411, 414
Sau3AI	GATC	4 cut(s)	201, 229, 468, 520
Sau96I	GGNCC	3 cut(s)	211, 212, 220
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	215, 359
SduI	GDGCHC	2 cut(s)	104, 215
SfaNI	GCATC	2 cut(s)	535, 583
SgrAI	CRCCGGYG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SsiI	CCGC	8 cut(s)	48, 105, 411, 414, 515, 596, 679, 695
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	213, 357
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	2 cut(s)	531, 742
TaqI	TCGA	8 cut(s)	72, 120, 153, 327, 354, 540, 723, 759
TauI	GCSGC	2 cut(s)	413, 416
TfiI	GAWTC	4 cut(s)	18, 496, 703, 751
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	356, 689
TspGWI	ACGGA	2 cut(s)	242, 350
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	1 cut(s)	457
XmiI	GTMKAC	4 cut(s)	72, 120, 153, 384
XmnI	GAANNNNTTC	2 cut(s)	270, 755
XspI	CTAG	1 cut(s)	149
ZraI	GACGTC	1 cut(s)	529
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.