FvH4_6g10310

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016874
Physical Location & Seq
Forward (+)
6140947 .. 6142439
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10310.t1

Sequence Viewer

Length: 759 bp
ATGGGATTCCGTTTTGGACCATTCATACATGAATGCAGTCTGTACAAGCATCAACTTCAATTCAATTCTGCTGAAGGAAACAAACAAAAAATGAGCTCAAGGGATTCTTCTTCATCTTCTTCTGGGAAGCAGAGAAGAAGGACTCGCCCTAGAAGCGTTAATCTACTTAACATTACAGTAGCTGAAGCTAGGAGACAGGTTTACCATGCCTTGGTTCTCCACAGAACAACATCAAAGTCATCAGTTCCATCTTCTTCATCCTCATCCTCCTCCTCCTCCTCATCATCATCATCATCCTCATCATCATCACATGATGTTGTCAATGGTACTGCGCAGCTATTGCATGCATCTACGCAGCTATTGCAGTCGATGCCTCAGGCGGAGCAGGCTTGGTCAACCACGGAGCCCTCGGTGCTGCCTCAGATCAGTCATATGCCATATTCTGGGGGAGCTGCAGCCATGGAAGCAGCAGACATTGGATTTGAGTGGGGAGAGAACCAAGCTTCTGCCTATGCTTGGTGGTTGGCTTTTCTGAAGAGCTTAGATGGTAATAATAGTACTAGTAATAACACTGTTCCTCAGGAGTTTAAGTACCCATTGGCATTGGGGAGTTCTAACTGGTTTTTTGGCCAGAGGCCTGGTGGTAGTTTAAAAGTAGAAGAGGCAGATGATCATGAGCAGATTCCTTCACCAGATGAGTGGTTGATAATTCCCACAACAGAAAATCATGAGGGTGAGTTTAATCATGTAATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

253

Amino Acids

27.56

Weight (kDa)

6.19

Isoelectric Point (pI)

69.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AccB7I CCANNNNNTGG 2 cut(s) 211, 443
AciI CCGC 1 cut(s) 380
AcoI YGGCCR 1 cut(s) 628
AcuI CTGAAG 3 cut(s) 93, 204, 554
AfaI GTAC 4 cut(s) 44, 328, 559, 593
AfiI CCNNNNNNNGG 3 cut(s) 211, 443, 516
AgsI TTSAA 2 cut(s) 59, 64
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 8 cut(s) 96, 182, 188, 337, 358, 452, 503, 540
AluI AGCT 8 cut(s) 96, 182, 188, 337, 358, 452, 503, 540
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 2 cut(s) 628, 635
ApeKI GCWGC 6 cut(s) 334, 355, 415, 452, 455, 467
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 681, 746
AvaII GGWCC 1 cut(s) 17
AxyI CCTNAGG 2 cut(s) 375, 579
BalI TGGCCA 1 cut(s) 630
BanII GRGCYC 2 cut(s) 98, 408
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 6 cut(s) 346, 367, 402, 439, 467, 479
BccI CCATC 2 cut(s) 256, 539
BciT130I CCWGG 1 cut(s) 639
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 187
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 3 cut(s) 150, 189, 561
BfmI CTRYAG 1 cut(s) 453
BisI GCNGC 6 cut(s) 335, 356, 416, 453, 456, 468
BlsI GCNGC 6 cut(s) 336, 357, 417, 454, 457, 469
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 3 cut(s) 58, 356, 360
BpuEI CTTGAG 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 210, 399, 408, 459
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 443, 516
Bse1I ACTGG 1 cut(s) 623
Bse21I CCTNAGG 2 cut(s) 375, 579
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 4 cut(s) 210, 399, 408, 459
BseGI GGATG 3 cut(s) 257, 263, 293
BseLI CCNNNNNNNGG 3 cut(s) 211, 443, 516
BseMII CTCAG 3 cut(s) 389, 434, 593
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 4 cut(s) 259, 262, 265, 268
BseXI GCAGC 6 cut(s) 346, 367, 402, 439, 467, 479
BshFI GGCC 2 cut(s) 630, 637
BsiHKAI GWGCWC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 211, 443, 516
BsmAI GTCTC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 2 cut(s) 630, 637
Bsp1286I GDGCHC 2 cut(s) 98, 408
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 423, 670
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 1 cut(s) 380
BspANI GGCC 2 cut(s) 630, 637
BspCNI CTCAG 3 cut(s) 388, 433, 592
BspHI TCATGA 2 cut(s) 673, 727
BspLI GGNNCC 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 530
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 4 cut(s) 210, 399, 408, 459
BssMI GATC 2 cut(s) 423, 670
BssT1I CCWWGG 2 cut(s) 210, 459
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 2 cut(s) 178, 574
Bst6I CTCTTC 2 cut(s) 530, 654
BstAPI GCANNNNNTGC 3 cut(s) 340, 361, 370
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 345, 387
BstDEI CTNAG 4 cut(s) 375, 420, 541, 579
BstDSI CCRYGG 2 cut(s) 399, 459
BstF5I GGATG 3 cut(s) 257, 263, 293
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 426, 673
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 2 cut(s) 423, 670
BstMWI GCNNNNNNNGC 7 cut(s) 153, 340, 361, 370, 386, 412, 464
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 6 cut(s) 346, 367, 402, 439, 467, 479
BstXI CCANNNNNNTGG 2 cut(s) 638, 699
Bsu36I CCTNAGG 2 cut(s) 375, 579
BsuRI GGCC 2 cut(s) 630, 637
BtgI CCRYGG 2 cut(s) 399, 459
BtsCI GGATG 3 cut(s) 257, 263, 293
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 345, 387
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 2 cut(s) 673, 727
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 4 cut(s) 43, 327, 558, 592
CviAII CATG 8 cut(s) 29, 206, 311, 344, 460, 674, 728, 746
CviQI GTAC 4 cut(s) 43, 327, 558, 592
DdeI CTNAG 4 cut(s) 375, 420, 541, 579
DpnI GATC 2 cut(s) 425, 672
DpnII GATC 2 cut(s) 423, 670
DraI TTTAAA 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 628
Eam1104I CTCTTC 2 cut(s) 530, 654
EarI CTCTTC 2 cut(s) 530, 654
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 210, 459
Eco147I AGGCCT 1 cut(s) 637
Eco24I GRGCYC 2 cut(s) 98, 408
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 96
Eco57I CTGAAG 3 cut(s) 93, 204, 554
Eco81I CCTNAGG 2 cut(s) 375, 579
EcoICRI GAGCTC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 210, 459
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 2 cut(s) 98, 408
ErhI CCWWGG 2 cut(s) 210, 459
FaeI CATG 8 cut(s) 32, 209, 314, 347, 463, 677, 731, 749
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FatI CATG 8 cut(s) 28, 205, 310, 343, 459, 673, 727, 745
FauNDI CATATG 1 cut(s) 432
FbaI TGATCA 1 cut(s) 670
Fnu4HI GCNGC 6 cut(s) 335, 356, 416, 453, 456, 468
FokI GGATG 3 cut(s) 244, 250, 280
FriOI GRGCYC 2 cut(s) 98, 408
Fsp4HI GCNGC 6 cut(s) 335, 356, 416, 453, 456, 468
FspBI CTAG 3 cut(s) 150, 189, 561
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
GluI GCNGC 6 cut(s) 335, 356, 416, 453, 456, 468
HaeIII GGCC 2 cut(s) 630, 637
HhaI GCGC 1 cut(s) 334
Hin1II CATG 8 cut(s) 32, 209, 314, 347, 463, 677, 731, 749
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 501
HinfI GANTC 4 cut(s) 6, 104, 142, 682
HphI GGTGA 2 cut(s) 681, 746
Hpy166II GTNNAC 2 cut(s) 202, 396
Hpy188I TCNGA 2 cut(s) 423, 534
Hpy188III TCNNGA 3 cut(s) 581, 674, 728
Hpy8I GTNNAC 2 cut(s) 202, 396
HpyAV CCTTC 3 cut(s) 68, 132, 696
HpyCH4III ACNGT 2 cut(s) 178, 574
HpyCH4V TGCA 5 cut(s) 36, 343, 347, 364, 455
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 340, 361, 370, 386, 412, 464
HpyF3I CTNAG 4 cut(s) 375, 420, 541, 579
Hsp92II CATG 8 cut(s) 32, 209, 314, 347, 463, 677, 731, 749
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 2 cut(s) 423, 670
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 3 cut(s) 382, 403, 449
Lsp1109I GCAGC 6 cut(s) 346, 367, 402, 439, 467, 479
LweI GCATC 3 cut(s) 58, 356, 360
MaeI CTAG 3 cut(s) 150, 189, 561
MalI GATC 2 cut(s) 425, 672
MboI GATC 2 cut(s) 423, 670
MboII GAAGA 9 cut(s) 99, 102, 108, 111, 147, 243, 246, 547, 671
MhlI GDGCHC 2 cut(s) 98, 408
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 4 cut(s) 59, 64, 708, 750
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 1 cut(s) 136
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 1 cut(s) 630
MseI TTAA 5 cut(s) 159, 168, 588, 650, 741
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 630
MspR9I CCNGG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 7 cut(s) 153, 340, 361, 370, 386, 412, 464
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 432
NdeII GATC 2 cut(s) 423, 670
NlaIII CATG 8 cut(s) 32, 209, 314, 347, 463, 677, 731, 749
NlaIV GGNNCC 1 cut(s) 405
NsbI TGCGCA 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 347
PaeI GCATGC 1 cut(s) 347
PagI TCATGA 2 cut(s) 673, 727
PceI AGGCCT 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 530
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 6, 104, 682
PflMI CCANNNNNTGG 2 cut(s) 211, 443
PkrI GCNGC 6 cut(s) 336, 357, 417, 454, 457, 469
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 457
PstNI CAGNNNCTG 1 cut(s) 182
RsaI GTAC 4 cut(s) 44, 328, 559, 593
RsaNI GTAC 4 cut(s) 43, 327, 558, 592
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 530
SaqAI TTAA 5 cut(s) 159, 168, 588, 650, 741
SatI GCNGC 6 cut(s) 335, 356, 416, 453, 456, 468
Sau3AI GATC 2 cut(s) 423, 670
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 98, 408
SetI ASST 9 cut(s) 98, 184, 190, 201, 339, 360, 454, 505, 542
SfaNI GCATC 3 cut(s) 58, 356, 360
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 560
SphI GCATGC 1 cut(s) 347
Sse9I AATT 4 cut(s) 59, 64, 708, 750
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 1 cut(s) 380
SspMI CTAG 3 cut(s) 150, 189, 561
SstI GAGCTC 1 cut(s) 98
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 2 cut(s) 210, 459
TaaI ACNGT 2 cut(s) 178, 574
TaqI TCGA 1 cut(s) 368
TasI AATT 4 cut(s) 59, 64, 708, 750
TatI WGTACW 2 cut(s) 42, 557
TfiI GAWTC 3 cut(s) 6, 104, 682
Tru1I TTAA 5 cut(s) 159, 168, 588, 650, 741
Tru9I TTAA 5 cut(s) 159, 168, 588, 650, 741
TscAI CASTG 1 cut(s) 577
TseI GCWGC 6 cut(s) 334, 355, 415, 452, 455, 467
TspDTI ATGAA 4 cut(s) 13, 45, 102, 246
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 2 cut(s) 211, 443
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XspI CTAG 3 cut(s) 150, 189, 561
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.