Rh3AG105500

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0016874
Physical Location & Seq
Forward (+)
8873561 .. 8876871
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG105500.1

Sequence Viewer

Length: 366 bp
ATGCCTCTGCCGGAGCCAGTTTGGTCAACCACGGCGCCTTCGGTGCCGCCTCATGTGCCATATTCTGGGGGACCAGCCGTGGAAGCAGCAGACATTGAATTTGAGTGGGGAGAGAACCAAGCTTCTTCCTATACTTGGTGGTTGGCTTTTTTGAAGAGTTTAGATCGTAATAATAGCACTACTAGTACTGTTCCTCAAGAGTTTAAGTACCCACTGGCATTGGGGAGTTCTAATTTGTTTTTTGGCCGGAGGCCTGGTGGTAATTTTAAAGTCGAAGAGGCAGATGAGCAGATCCCTTCACCAGATGAATGGTTGATTATTCCAACCACAGAAAATCATGAAGGTGAGTTTAATCATAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

121

Amino Acids

13.57

Weight (kDa)

4.62

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 34, 43
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 2 cut(s) 187, 209
AfiI CCNNNNNNNGG 2 cut(s) 65, 135
AgsI TTSAA 2 cut(s) 98, 154
AhlI ACTAGT 1 cut(s) 182
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 1 cut(s) 286
AoxI GGCC 2 cut(s) 244, 251
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 291, 356
AvaII GGWCC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 34, 43
BbvI GCAGC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 48, 62
BciT130I CCWGG 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 2 cut(s) 47, 87
BlsI GCNGC 2 cut(s) 48, 88
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 4 cut(s) 15, 36, 45, 72
BmrFI CCNGG 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 30, 78
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 135
Bse1I ACTGG 2 cut(s) 17, 219
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 30, 78
BseLI CCNNNNNNNGG 2 cut(s) 65, 135
BseNI ACTGG 2 cut(s) 17, 219
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 246, 253
BshNI GGYRCC 2 cut(s) 34, 43
BsiSI CCGG 2 cut(s) 11, 247
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 65, 135
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 2 cut(s) 246, 253
Bsp143I GATC 2 cut(s) 163, 291
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 246, 253
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 4 cut(s) 15, 36, 45, 72
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 2 cut(s) 34, 43
BsrI ACTGG 2 cut(s) 17, 219
BssECI CCNNGG 2 cut(s) 30, 78
BssMI GATC 2 cut(s) 163, 291
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 149, 270
BstACI GRCGYC 1 cut(s) 35
BstDSI CCRYGG 2 cut(s) 30, 78
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 166, 294
BstMBI GATC 2 cut(s) 163, 291
BstMWI GCNNNNNNNGC 3 cut(s) 43, 55, 83
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 309
BstYI RGATCY 1 cut(s) 291
BsuRI GGCC 2 cut(s) 246, 253
BtgI CCRYGG 2 cut(s) 30, 78
BtsIMutI CAGTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 337
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 186, 208
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 2 cut(s) 53, 338
CviJI RGCY 6 cut(s) 16, 77, 122, 146, 246, 253
CviKI_1 RGCY 6 cut(s) 16, 77, 122, 146, 246, 253
CviQI GTAC 2 cut(s) 186, 208
DinI GGCGCC 1 cut(s) 36
DpnI GATC 2 cut(s) 165, 293
DpnII GATC 2 cut(s) 163, 291
DraI TTTAAA 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 149, 270
EarI CTCTTC 2 cut(s) 149, 270
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 253
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
FaeI CATG 2 cut(s) 56, 341
FaiI YATR 5 cut(s) 54, 61, 132, 339, 357
FaqI GGGAC 1 cut(s) 84
FatI CATG 2 cut(s) 52, 337
Fnu4HI GCNGC 2 cut(s) 47, 87
Fsp4HI GCNGC 2 cut(s) 47, 87
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 47, 87
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 2 cut(s) 246, 253
HapII CCGG 2 cut(s) 11, 247
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 56, 341
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 120
HpaII CCGG 2 cut(s) 11, 247
HphI GGTGA 2 cut(s) 291, 356
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 197, 338
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 48, 306, 335
HpyCH4III ACNGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 55, 83
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 56, 341
HspAI GCGC 1 cut(s) 35
KasI GGCGCC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 163, 291
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 9 cut(s) 24, 30, 51, 87, 200, 240, 260, 267, 315
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 183
MalI GATC 2 cut(s) 165, 293
MboI GATC 2 cut(s) 163, 291
MboII GAAGA 3 cut(s) 117, 166, 287
MflI RGATCY 1 cut(s) 291
MluCI AATT 3 cut(s) 98, 232, 262
Mly113I GGCGCC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 5 cut(s) 15, 60, 204, 243, 271
MseI TTAA 4 cut(s) 204, 267, 351, 364
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 2 cut(s) 11, 247
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 43, 55, 83
NarI GGCGCC 1 cut(s) 35
NdeII GATC 2 cut(s) 163, 291
NlaIII CATG 2 cut(s) 56, 341
NlaIV GGNNCC 4 cut(s) 15, 36, 45, 72
PagI TCATGA 1 cut(s) 337
PceI AGGCCT 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 2 cut(s) 48, 88
PluTI GGCGCC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 4 cut(s) 15, 36, 45, 72
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 187, 209
RsaNI GTAC 2 cut(s) 186, 208
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 4 cut(s) 204, 267, 351, 364
SatI GCNGC 2 cut(s) 47, 87
Sau3AI GATC 2 cut(s) 163, 291
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 255
SetI ASST 2 cut(s) 124, 346
SfoI GGCGCC 1 cut(s) 36
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 3 cut(s) 98, 232, 262
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 1 cut(s) 47
SspDI GGCGCC 1 cut(s) 34
SspMI CTAG 1 cut(s) 183
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 98, 232, 262
TatI WGTACW 1 cut(s) 185
TauI GCSGC 1 cut(s) 49
Tru1I TTAA 4 cut(s) 204, 267, 351, 364
Tru9I TTAA 4 cut(s) 204, 267, 351, 364
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 321, 354
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 98
XspI CTAG 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.