Rmu_sc0001521.1_g000061

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001521.1
OG0016874
Physical Location & Seq
Reverse (-)
262689 .. 264864
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001521.1_g000061.1.cds

Sequence Viewer

Length: 717 bp
atgagctcaaatattcagagaaggggttcttcttcttcttcttcttcttcttcttctcggaagcaaagaagaaggtctcgccctagaagccttaatccactcaacattaacgttgctgaagctaggagacaggtttaccatgccttgatcctccacagaacatcatcaaagtcatcatttcaatcttcttcatcctcatcatcctcgcatgatgttgtcagtggtacttctacgcagctattgcagtcgatgcctctgccggagccagtttggtcaaccacggcgccttcggtgccgcctcatgtgccatattctgggggaccagccatggaagcagcagacattgaatttgagtggggagagaaccaagcttcttcctatacttggtggttggcttttttgaagactttagatggtaataatagcactactagtactgttcctcaagagtttaagtacccactggcattggggagttctaatttgttttttggccggaggcctggtggtaattttaaagtcgaagaggcagatgagcagatcccttcaccagatgaatggttgataattccaaccacagaaaatcatgaagggccagatatcaccatgcccgagccaacactcaagactgcaggaggcaccacgccaccatctcgcctgtaccacccttgccttccgaccaccggcagcatcaccactgcccccaacttgacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

238

Amino Acids

25.9

Weight (kDa)

7.03

Isoelectric Point (pI)

79.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 283, 292, 638
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 1 cut(s) 296
AclI AACGTT 1 cut(s) 111
AclWI GGATC 2 cut(s) 142, 535
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 4 cut(s) 226, 436, 458, 662
AfiI CCNNNNNNNGG 3 cut(s) 314, 384, 683
AgsI TTSAA 3 cut(s) 182, 347, 403
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 4 cut(s) 6, 122, 238, 371
AluI AGCT 4 cut(s) 6, 122, 238, 371
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 81, 121
AlwI GGATC 2 cut(s) 142, 535
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 3 cut(s) 493, 500, 593
ApeKI GCWGC 3 cut(s) 235, 335, 687
ApoI RAATTY 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 320, 593
AsuHPI GGTGA 3 cut(s) 540, 595, 685
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 320
BanI GGYRCC 3 cut(s) 283, 292, 638
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 247, 347, 699
BccI CCATC 2 cut(s) 407, 658
BceAI ACGGC 1 cut(s) 297
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 81, 121
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 84, 123, 432
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 4 cut(s) 236, 296, 336, 688
BlsI GCNGC 4 cut(s) 237, 297, 337, 689
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 320
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 2 cut(s) 320, 593
BmiI GGNNCC 5 cut(s) 264, 285, 294, 321, 640
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 240, 699
BpiI GAAGAC 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 429, 608
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 279, 327
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 384, 683
Bse118I RCCGGY 1 cut(s) 683
Bse1I ACTGG 2 cut(s) 266, 468
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 279, 327
BseGI GGATG 2 cut(s) 191, 200
BseLI CCNNNNNNNGG 3 cut(s) 314, 384, 683
BseNI ACTGG 2 cut(s) 266, 468
BseXI GCAGC 3 cut(s) 247, 347, 699
BshFI GGCC 3 cut(s) 495, 502, 595
BshNI GGYRCC 3 cut(s) 283, 292, 638
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 3 cut(s) 260, 496, 684
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 3 cut(s) 314, 384, 683
BsmAI GTCTC 2 cut(s) 81, 121
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 3 cut(s) 495, 502, 595
Bso31I GGTCTC 1 cut(s) 81
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 147, 540
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 1 cut(s) 296
BspANI GGCC 3 cut(s) 495, 502, 595
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 5 cut(s) 264, 285, 294, 321, 640
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 142, 535
BspT107I GGYRCC 3 cut(s) 283, 292, 638
BspTNI GGTCTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 683
BsrI ACTGG 2 cut(s) 266, 468
BssAI RCCGGY 1 cut(s) 683
BssECI CCNNGG 2 cut(s) 279, 327
BssMI GATC 2 cut(s) 147, 540
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 519
BstACI GRCGYC 1 cut(s) 284
BstAPI GCANNNNNTGC 2 cut(s) 241, 250
BstDSI CCRYGG 2 cut(s) 279, 327
BstF5I GGATG 2 cut(s) 191, 200
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 150, 543
BstMAI GTCTC 2 cut(s) 81, 121
BstMBI GATC 2 cut(s) 147, 540
BstMWI GCNNNNNNNGC 6 cut(s) 87, 241, 250, 292, 304, 332
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 3 cut(s) 247, 347, 699
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 540
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 1 cut(s) 540
BsuRI GGCC 3 cut(s) 495, 502, 595
BtgI CCRYGG 2 cut(s) 279, 327
BtsCI GGATG 2 cut(s) 191, 200
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 226, 461, 696
CciI TCATGA 1 cut(s) 586
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 320, 593
Csp6I GTAC 4 cut(s) 225, 435, 457, 661
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 6 cut(s) 140, 209, 302, 328, 587, 607
CviQI GTAC 4 cut(s) 225, 435, 457, 661
DinI GGCGCC 1 cut(s) 285
DpnI GATC 2 cut(s) 149, 542
DpnII GATC 2 cut(s) 147, 540
DraI TTTAAA 1 cut(s) 517
EaeI YGGCCR 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 327
Eco147I AGGCCT 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 502
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 6 cut(s) 143, 212, 305, 331, 590, 610
FaiI YATR 9 cut(s) 141, 210, 303, 310, 329, 381, 588, 608, 715
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 333
FatI CATG 6 cut(s) 139, 208, 301, 327, 586, 606
Fnu4HI GCNGC 4 cut(s) 236, 296, 336, 688
FokI GGATG 2 cut(s) 178, 187
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 236, 296, 336, 688
FspBI CTAG 3 cut(s) 84, 123, 432
GlaI GCGC 1 cut(s) 285
GluI GCNGC 4 cut(s) 236, 296, 336, 688
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 3 cut(s) 495, 502, 595
HapII CCGG 3 cut(s) 260, 496, 684
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 6 cut(s) 143, 212, 305, 331, 590, 610
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 369
HpaII CCGG 3 cut(s) 260, 496, 684
HphI GGTGA 3 cut(s) 540, 595, 685
Hpy166II GTNNAC 2 cut(s) 136, 276
Hpy188I TCNGA 3 cut(s) 18, 60, 678
Hpy188III TCNNGA 3 cut(s) 446, 587, 625
Hpy8I GTNNAC 2 cut(s) 136, 276
HpyAV CCTTC 6 cut(s) 15, 66, 297, 555, 584, 683
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 244, 632
HpyF10VI GCNNNNNNNGC 6 cut(s) 87, 241, 250, 292, 304, 332
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 6 cut(s) 143, 212, 305, 331, 590, 610
HspAI GCGC 1 cut(s) 284
KasI GGCGCC 1 cut(s) 283
Kzo9I GATC 2 cut(s) 147, 540
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 3 cut(s) 247, 347, 699
LweI GCATC 2 cut(s) 240, 699
MaeI CTAG 3 cut(s) 84, 123, 432
MaeII ACGT 1 cut(s) 111
MalI GATC 2 cut(s) 149, 542
MboI GATC 2 cut(s) 147, 540
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 347, 481, 511, 567
Mly113I GGCGCC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 596, 701
MnlI CCTC 9 cut(s) 161, 205, 214, 264, 309, 453, 492, 520, 629
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 4 cut(s) 93, 108, 453, 516
MspI CCGG 3 cut(s) 260, 496, 684
MspR9I CCNGG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 6 cut(s) 87, 241, 250, 292, 304, 332
NarI GGCGCC 1 cut(s) 284
NcoI CCATGG 1 cut(s) 327
NdeII GATC 2 cut(s) 147, 540
NlaIII CATG 6 cut(s) 143, 212, 305, 331, 590, 610
NlaIV GGNNCC 5 cut(s) 264, 285, 294, 321, 640
PagI TCATGA 1 cut(s) 586
PceI AGGCCT 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 4 cut(s) 237, 297, 337, 689
PluTI GGCGCC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 5 cut(s) 264, 285, 294, 321, 640
PspPI GGNCC 2 cut(s) 320, 593
PstI CTGCAG 1 cut(s) 634
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 4 cut(s) 226, 436, 458, 662
RsaNI GTAC 4 cut(s) 225, 435, 457, 661
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 93, 108, 453, 516
SatI GCNGC 4 cut(s) 236, 296, 336, 688
Sau3AI GATC 2 cut(s) 147, 540
Sau96I GGNCC 2 cut(s) 320, 593
ScaI AGTACT 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 8, 77, 114, 124, 135, 240, 373
SfaNI GCATC 2 cut(s) 240, 699
SfcI CTRYAG 1 cut(s) 630
SfoI GGCGCC 1 cut(s) 285
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 444, 623
SmoI CTYRAG 2 cut(s) 444, 623
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 4 cut(s) 347, 481, 511, 567
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 1 cut(s) 296
SspDI GGCGCC 1 cut(s) 283
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 84, 123, 432
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 248, 522
TasI AATT 4 cut(s) 347, 481, 511, 567
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 298
Tru1I TTAA 4 cut(s) 93, 108, 453, 516
Tru9I TTAA 4 cut(s) 93, 108, 453, 516
TscAI CASTG 3 cut(s) 226, 468, 703
TseI GCWGC 3 cut(s) 235, 335, 687
TspDTI ATGAA 3 cut(s) 180, 570, 603
TspRI CASTG 3 cut(s) 226, 468, 703
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 84, 123, 432
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.