Rroxscaffold_6G00418880

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016874
Physical Location & Seq
Reverse (-)
40434203 .. 40435156
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418880.1

Sequence Viewer

Length: 600 bp
ATGAGCTCAAATATTCAGAGAAGGGGTTCTTCTTCTTATCGGAAGCAAAGAAGAAGGTCTCGCCCTAGAAGCCTTAATCCACTCAACATTAACGTTGCTGAAGCTAGGAGACAGGTTTACCATGCCTTGATCCTCCACAGAACATCATCAAAGTCATCATTTCAATCTTCTTCATCCTCATCATCCTCGCATGATGTTGTCAGTGGTACTTCTACGCAGCTATTGCAGTCGATGCCTCTGCCGGAGCCGGTTTGGTCAACCACGGCGCCTTCGGTGCCGCCTCATGTGCCATATTCTGGGGGACCAGCCATGGAAGCAGCAGACATTGAATTTGAGTGGGGAGAGAACCAAGCTTCTTCCTATACTTGGTGGTTGGCTTTTTTGAAGAGTTTAGATGGTAATAATAGCACTACTAGTACTGTTCCTCAAGAGTTTAAGTACCCACTGGCATTGGGGAGTTCTGATTTGATTTTTGGCCGGAGGCCTGGTGGTAATTTTAAAGTCGAAGAGGCAGATGAGCAGACCCCTCCACCAGATGAATGGTTGATAATTCCAACCACAGAAAATCATGAAGGTGAGTTTAATCATGTAATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

199

Amino Acids

22.11

Weight (kDa)

6.3

Isoelectric Point (pI)

73.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 265, 274
AccB7I CCANNNNNTGG 1 cut(s) 296
AciI CCGC 1 cut(s) 278
AclI AACGTT 1 cut(s) 93
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 3 cut(s) 208, 418, 440
AfiI CCNNNNNNNGG 2 cut(s) 296, 366
AgsI TTSAA 3 cut(s) 164, 329, 385
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 4 cut(s) 6, 104, 220, 353
AluI AGCT 4 cut(s) 6, 104, 220, 353
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 63, 103
AlwI GGATC 1 cut(s) 124
AoxI GGCC 2 cut(s) 475, 482
ApeKI GCWGC 2 cut(s) 217, 317
ApoI RAATTY 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 265, 274
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 229, 329
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 63, 103
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 3 cut(s) 66, 105, 414
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 3 cut(s) 218, 278, 318
BlsI GCNGC 3 cut(s) 219, 279, 319
BmcAI AGTACT 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 4 cut(s) 246, 267, 276, 303
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 261, 309
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 366
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 261, 309
BseGI GGATG 2 cut(s) 173, 182
BseLI CCNNNNNNNGG 2 cut(s) 296, 366
BseNI ACTGG 1 cut(s) 450
BseXI GCAGC 2 cut(s) 229, 329
BshFI GGCC 2 cut(s) 477, 484
BshNI GGYRCC 2 cut(s) 265, 274
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 242, 248, 478
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 296, 366
BsmAI GTCTC 2 cut(s) 63, 103
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 2 cut(s) 477, 484
Bso31I GGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 477, 484
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 4 cut(s) 246, 267, 276, 303
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 265, 274
BspTNI GGTCTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 261, 309
BssMI GATC 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 380, 501
BstACI GRCGYC 1 cut(s) 266
BstAPI GCANNNNNTGC 2 cut(s) 223, 232
BstDSI CCRYGG 2 cut(s) 261, 309
BstF5I GGATG 2 cut(s) 173, 182
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 2 cut(s) 63, 103
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 6 cut(s) 69, 223, 232, 274, 286, 314
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 229, 329
BstXI CCANNNNNNTGG 1 cut(s) 540
BsuRI GGCC 2 cut(s) 477, 484
BtgI CCRYGG 2 cut(s) 261, 309
BtsCI GGATG 2 cut(s) 173, 182
BtsIMutI CAGTG 2 cut(s) 208, 443
CciI TCATGA 1 cut(s) 568
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 207, 417, 439
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 6 cut(s) 122, 191, 284, 310, 569, 587
CviQI GTAC 3 cut(s) 207, 417, 439
DinI GGCGCC 1 cut(s) 267
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DraI TTTAAA 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 380, 501
EarI CTCTTC 2 cut(s) 380, 501
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 6 cut(s) 125, 194, 287, 313, 572, 590
FaiI YATR 8 cut(s) 123, 192, 285, 292, 311, 363, 570, 588
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 315
FatI CATG 6 cut(s) 121, 190, 283, 309, 568, 586
Fnu4HI GCNGC 3 cut(s) 218, 278, 318
FokI GGATG 2 cut(s) 160, 169
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 218, 278, 318
FspBI CTAG 3 cut(s) 66, 105, 414
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 218, 278, 318
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 2 cut(s) 477, 484
HapII CCGG 3 cut(s) 242, 248, 478
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 6 cut(s) 125, 194, 287, 313, 572, 590
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 351
HpaII CCGG 3 cut(s) 242, 248, 478
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 2 cut(s) 118, 258
Hpy188I TCNGA 3 cut(s) 18, 42, 463
Hpy188III TCNNGA 2 cut(s) 428, 569
Hpy8I GTNNAC 2 cut(s) 118, 258
HpyAV CCTTC 4 cut(s) 15, 48, 279, 566
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 223, 232, 274, 286, 314
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 6 cut(s) 125, 194, 287, 313, 572, 590
HspAI GCGC 1 cut(s) 266
KasI GGCGCC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 2 cut(s) 229, 329
LweI GCATC 1 cut(s) 222
MaeI CTAG 3 cut(s) 66, 105, 414
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 8 cut(s) 21, 24, 63, 159, 162, 348, 397, 518
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 329, 493, 549, 591
Mly113I GGCGCC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 9 cut(s) 143, 187, 196, 246, 291, 435, 474, 502, 537
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 5 cut(s) 75, 90, 435, 498, 582
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 3 cut(s) 242, 248, 478
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 69, 223, 232, 274, 286, 314
NarI GGCGCC 1 cut(s) 266
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 129
NlaIII CATG 6 cut(s) 125, 194, 287, 313, 572, 590
NlaIV GGNNCC 4 cut(s) 246, 267, 276, 303
PagI TCATGA 1 cut(s) 568
PceI AGGCCT 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 3 cut(s) 219, 279, 319
PluTI GGCGCC 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 4 cut(s) 246, 267, 276, 303
PspPI GGNCC 1 cut(s) 302
RsaI GTAC 3 cut(s) 208, 418, 440
RsaNI GTAC 3 cut(s) 207, 417, 439
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 75, 90, 435, 498, 582
SatI GCNGC 3 cut(s) 218, 278, 318
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 59, 96, 106, 117, 222, 355, 577
SfaNI GCATC 1 cut(s) 222
SfoI GGCGCC 1 cut(s) 267
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 4 cut(s) 329, 493, 549, 591
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 1 cut(s) 278
SspDI GGCGCC 1 cut(s) 265
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 66, 105, 414
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 230, 504
TasI AATT 4 cut(s) 329, 493, 549, 591
TatI WGTACW 1 cut(s) 416
TauI GCSGC 1 cut(s) 280
Tru1I TTAA 5 cut(s) 75, 90, 435, 498, 582
Tru9I TTAA 5 cut(s) 75, 90, 435, 498, 582
TscAI CASTG 2 cut(s) 208, 450
TseI GCWGC 2 cut(s) 217, 317
TspDTI ATGAA 3 cut(s) 162, 552, 585
TspRI CASTG 2 cut(s) 208, 450
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 66, 105, 414
ZrmI AGTACT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.