Prupe.6G286800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016874
Physical Location & Seq
Forward (+)
26546506 .. 26547904
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G286800.1

Sequence Viewer

Length: 600 bp
ATGAGCTCTGCATCAGAGAAATCCAATTCTCCAGCCAAGCCAGTGAGAAGAAGGGCAAGCAGAAGGGCTTCCCAGCTTTGTGACATTAATGCTGGTGAAATTAGGAGGCAGATTTTTCAAGCCTTGCAACTCCATAGAGCATCATCATCATCATCATCATCATCATCTTCATCTTCATCTTCATCATCATCGGCATCTTCATCCCATGTTGTTGTTGGTTCACAATTTAATTCATTGGTGGAGTCCATGCCTCTGCCTGGACCTGTTTGGTCTACAACTGCACCTTCAGTTTTGGCTGATGCACCATCTACAGCAGCAGCAACCATGGAAGCCTTAGAATTTGAGTGGGGAGAGAACCAAGCCTCTTCCTATTCTTGGTGGTTATCTTTTCTAAATACCTTGGATAGTAACAATGCTGAAAAATCGAAGTACCCTTTATCACTGGGAAGTTCTAATTGGTTGTTTGGTCAGAACCAGAACAGTTGTACAGCACTTGATCAAGAGCCATCTTTGGTTGATGCAAATGATCAGAGCCCTTCCCCAGATGAATGGTTGATGCTACCAACTACAGAAGATGAGGGTGAGATTGAAATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.34

Weight (kDa)

4.56

Isoelectric Point (pI)

82.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AcsI RAATTY 2 cut(s) 338, 591
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 2 cut(s) 431, 487
AfiI CCNNNNNNNGG 2 cut(s) 257, 375
AgsI TTSAA 2 cut(s) 119, 590
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 2 cut(s) 6, 76
AluI AGCT 2 cut(s) 6, 76
Alw21I GWGCWC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 314, 317
ApoI RAATTY 2 cut(s) 338, 591
AseI ATTAAT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 107, 593
AvaII GGWCC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 8, 536
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 326, 329
BccI CCATC 2 cut(s) 313, 514
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 2 cut(s) 496, 526
BfmI CTRYAG 2 cut(s) 309, 567
BisI GCNGC 2 cut(s) 315, 318
BlsI GCNGC 2 cut(s) 316, 319
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 6 cut(s) 20, 149, 203, 289, 508, 546
BmuI ACTGGG 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 324, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 375
Bse1I ACTGG 2 cut(s) 41, 447
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 324, 399
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 257, 375
BseNI ACTGG 2 cut(s) 41, 447
BseXI GCAGC 2 cut(s) 326, 329
BseYI CCCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 257, 375
Bsp1286I GDGCHC 2 cut(s) 8, 536
Bsp1407I TGTACA 1 cut(s) 485
Bsp143I GATC 2 cut(s) 496, 526
Bsp19I CCATGG 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 485
BsrI ACTGG 2 cut(s) 41, 447
BssECI CCNNGG 2 cut(s) 324, 399
BssMI GATC 2 cut(s) 496, 526
BssT1I CCWWGG 2 cut(s) 324, 399
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 370
BstAUI TGTACA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 334
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 2 cut(s) 499, 529
BstMBI GATC 2 cut(s) 496, 526
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 309, 567
BstV1I GCAGC 2 cut(s) 326, 329
BstXI CCANNNNNNTGG 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 48, 440
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 430, 486
CviAII CATG 3 cut(s) 206, 247, 325
CviQI GTAC 2 cut(s) 430, 486
DdeI CTNAG 1 cut(s) 334
DpnI GATC 2 cut(s) 498, 528
DpnII GATC 2 cut(s) 496, 526
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 324, 399
Eco24I GRGCYC 2 cut(s) 8, 536
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 324, 399
EcoT38I GRGCYC 2 cut(s) 8, 536
ErhI CCWWGG 2 cut(s) 324, 399
FaeI CATG 3 cut(s) 209, 250, 328
FaiI YATR 4 cut(s) 135, 207, 248, 326
FatI CATG 3 cut(s) 205, 246, 324
FbaI TGATCA 2 cut(s) 496, 526
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 315, 318
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 2 cut(s) 8, 536
Fsp4HI GCNGC 2 cut(s) 315, 318
GluI GCNGC 2 cut(s) 315, 318
GsaI CCCAGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 15
Hin1II CATG 3 cut(s) 209, 250, 328
HinfI GANTC 1 cut(s) 242
HphI GGTGA 2 cut(s) 107, 593
Hpy166II GTNNAC 2 cut(s) 221, 273
Hpy188I TCNGA 3 cut(s) 16, 471, 531
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 2 cut(s) 221, 273
HpyAV CCTTC 4 cut(s) 45, 57, 294, 546
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 5 cut(s) 11, 127, 281, 302, 521
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 3 cut(s) 209, 250, 328
Ksp22I TGATCA 2 cut(s) 496, 526
Kzo9I GATC 2 cut(s) 496, 526
Lsp1109I GCAGC 2 cut(s) 326, 329
LweI GCATC 6 cut(s) 20, 149, 203, 289, 508, 546
MaeIII GTNAC 2 cut(s) 80, 407
MalI GATC 2 cut(s) 498, 528
MboI GATC 2 cut(s) 496, 526
MboII GAAGA 7 cut(s) 60, 159, 165, 171, 189, 357, 584
MhlI GDGCHC 2 cut(s) 8, 536
MluCI AATT 7 cut(s) 25, 99, 224, 229, 338, 454, 591
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 99, 261, 373, 571
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 2 cut(s) 87, 228
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 324
NdeII GATC 2 cut(s) 496, 526
NlaIII CATG 3 cut(s) 209, 250, 328
NmuCI GTSAC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 316, 319
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 2 cut(s) 431, 487
RsaNI GTAC 2 cut(s) 430, 486
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 87, 228
SatI GCNGC 2 cut(s) 315, 318
Sau3AI GATC 2 cut(s) 496, 526
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 8, 536
SetI ASST 5 cut(s) 8, 78, 265, 286, 401
SfaNI GCATC 6 cut(s) 20, 149, 203, 289, 508, 546
SfcI CTRYAG 2 cut(s) 309, 567
SinI GGWCC 1 cut(s) 260
Sse9I AATT 7 cut(s) 25, 99, 224, 229, 338, 454, 591
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 324, 399
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 425
TasI AATT 7 cut(s) 25, 99, 224, 229, 338, 454, 591
TatI WGTACW 1 cut(s) 485
Tru1I TTAA 2 cut(s) 87, 228
Tru9I TTAA 2 cut(s) 87, 228
TscAI CASTG 2 cut(s) 48, 447
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 314, 317
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 6 cut(s) 159, 165, 171, 189, 222, 561
TspRI CASTG 2 cut(s) 48, 447
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 87
XapI RAATTY 2 cut(s) 338, 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.