RLG00000024954

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016874
Physical Location & Seq
Reverse (-)
40745589 .. 40746194
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024954

Sequence Viewer

Length: 606 bp
ATGAGCTCAAATATTCAGAGAAGGGGTTCTTCTTCTTCTTCTGGGAAGCAAAGAAGAAGGTCTCGCCCTAGAAGCCTTAATCCACTCAACATTAACGTTGCTGAAGCTAGGAGACAGGTTTACCATGCCTTGATCCTCCACAGAACATCATCAAAGTCATCATTTTCATCTTCTTCATCCTCATCATCCTCATCATCCTCACATGATGTTGTCAGTGGTACTTCTACGCAGCTATTGCAGTCGATGCCTCTGCCGGAGCCGGTTTGGTCAACCACGGCGCCTTCGGTGCCGCCTGATGTGCCATATTCTGGGGGACCAGCCATGGAAGCAGCAGACATTGAATTTGAGTGGGGAGAGAACCAAGCTTCTTCCTATACTTGGTGGTTGGCTTTTTTGAAGAGTTTAGATAATAGCACTACTAGTACTGTTCCTCAAGAGTTTAAGTACCCATTGGCATTGGGGAGTTCTAATTTGTTTTTTGGCCGGAGGCCTGGTGGTAATTTTAAAGTCGAAGAGGCAGATGAGCAGATCCCTTCACCTGATGAATGGTTGATAATTCCAACCACAGAAAATCAAGAAGGTGAGTTTAATCATGTAATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

202

Amino Acids

22.08

Weight (kDa)

5.81

Isoelectric Point (pI)

79.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 286
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 1 cut(s) 290
AclI AACGTT 1 cut(s) 96
AclWI GGATC 2 cut(s) 127, 523
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 3 cut(s) 220, 424, 446
AfiI CCNNNNNNNGG 2 cut(s) 308, 378
AgsI TTSAA 2 cut(s) 341, 397
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 6, 107, 232, 365
AluI AGCT 4 cut(s) 6, 107, 232, 365
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 66, 106
AlwI GGATC 2 cut(s) 127, 523
AoxI GGCC 2 cut(s) 481, 488
ApeKI GCWGC 2 cut(s) 229, 329
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 528, 593
AvaII GGWCC 1 cut(s) 314
BanI GGYRCC 2 cut(s) 277, 286
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 241, 341
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 66, 106
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 3 cut(s) 69, 108, 420
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 3 cut(s) 230, 290, 330
BlsI GCNGC 3 cut(s) 231, 291, 331
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 258, 279, 288, 315
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 273, 321
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 378
Bse118I RCCGGY 1 cut(s) 259
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 273, 321
BseGI GGATG 3 cut(s) 176, 185, 194
BseLI CCNNNNNNNGG 2 cut(s) 308, 378
BseXI GCAGC 2 cut(s) 241, 341
BshFI GGCC 2 cut(s) 483, 490
BshNI GGYRCC 2 cut(s) 277, 286
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 254, 260, 484
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 308, 378
BsmAI GTCTC 2 cut(s) 66, 106
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 2 cut(s) 483, 490
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 132, 528
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 483, 490
BspLI GGNNCC 4 cut(s) 258, 279, 288, 315
BspPI GGATC 2 cut(s) 127, 523
BspT107I GGYRCC 2 cut(s) 277, 286
BspTNI GGTCTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 273, 321
BssMI GATC 2 cut(s) 132, 528
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 2 cut(s) 392, 507
BstACI GRCGYC 1 cut(s) 278
BstAPI GCANNNNNTGC 2 cut(s) 235, 244
BstDSI CCRYGG 2 cut(s) 273, 321
BstF5I GGATG 3 cut(s) 176, 185, 194
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 135, 531
BstMAI GTCTC 2 cut(s) 66, 106
BstMBI GATC 2 cut(s) 132, 528
BstMWI GCNNNNNNNGC 6 cut(s) 72, 235, 244, 286, 298, 326
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 241, 341
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
BsuRI GGCC 2 cut(s) 483, 490
BtgI CCRYGG 2 cut(s) 273, 321
BtsCI GGATG 3 cut(s) 176, 185, 194
BtsIMutI CAGTG 1 cut(s) 220
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 3 cut(s) 219, 423, 445
CviAII CATG 4 cut(s) 125, 203, 322, 593
CviQI GTAC 3 cut(s) 219, 423, 445
DinI GGCGCC 1 cut(s) 279
DpnI GATC 2 cut(s) 134, 530
DpnII GATC 2 cut(s) 132, 528
DraI TTTAAA 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 392, 507
EarI CTCTTC 2 cut(s) 392, 507
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 321
Eco147I AGGCCT 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 4 cut(s) 128, 206, 325, 596
FaiI YATR 6 cut(s) 126, 204, 304, 323, 375, 594
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 327
FatI CATG 4 cut(s) 124, 202, 321, 592
Fnu4HI GCNGC 3 cut(s) 230, 290, 330
FokI GGATG 3 cut(s) 163, 172, 181
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 230, 290, 330
FspBI CTAG 3 cut(s) 69, 108, 420
GlaI GCGC 1 cut(s) 279
GluI GCNGC 3 cut(s) 230, 290, 330
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 483, 490
HapII CCGG 3 cut(s) 254, 260, 484
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 4 cut(s) 128, 206, 325, 596
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 363
HpaII CCGG 3 cut(s) 254, 260, 484
HphI GGTGA 2 cut(s) 528, 593
Hpy166II GTNNAC 2 cut(s) 121, 270
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 2 cut(s) 434, 575
Hpy8I GTNNAC 2 cut(s) 121, 270
HpyAV CCTTC 5 cut(s) 15, 51, 291, 543, 572
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 235, 244, 286, 298, 326
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 4 cut(s) 128, 206, 325, 596
HspAI GCGC 1 cut(s) 278
KasI GGCGCC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 132, 528
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 241, 341
LweI GCATC 1 cut(s) 234
MaeI CTAG 3 cut(s) 69, 108, 420
MaeII ACGT 1 cut(s) 96
MalI GATC 2 cut(s) 134, 530
MboI GATC 2 cut(s) 132, 528
MflI RGATCY 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 341, 469, 499, 555, 597
Mly113I GGCGCC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 584
MnlI CCTC 8 cut(s) 146, 190, 199, 208, 258, 441, 480, 508
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 5 cut(s) 78, 93, 441, 504, 588
MspI CCGG 3 cut(s) 254, 260, 484
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 6 cut(s) 72, 235, 244, 286, 298, 326
NarI GGCGCC 1 cut(s) 278
NcoI CCATGG 1 cut(s) 321
NdeII GATC 2 cut(s) 132, 528
NlaIII CATG 4 cut(s) 128, 206, 325, 596
NlaIV GGNNCC 4 cut(s) 258, 279, 288, 315
PceI AGGCCT 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 3 cut(s) 231, 291, 331
PluTI GGCGCC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 4 cut(s) 258, 279, 288, 315
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 528
RsaI GTAC 3 cut(s) 220, 424, 446
RsaNI GTAC 3 cut(s) 219, 423, 445
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 78, 93, 441, 504, 588
SatI GCNGC 3 cut(s) 230, 290, 330
Sau3AI GATC 2 cut(s) 132, 528
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 62, 99, 109, 120, 234, 367, 541, 583
SfaNI GCATC 1 cut(s) 234
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 5 cut(s) 341, 469, 499, 555, 597
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 1 cut(s) 290
SspDI GGCGCC 1 cut(s) 277
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 69, 108, 420
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 242, 510
TasI AATT 5 cut(s) 341, 469, 499, 555, 597
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 292
Tru1I TTAA 5 cut(s) 78, 93, 441, 504, 588
Tru9I TTAA 5 cut(s) 78, 93, 441, 504, 588
TscAI CASTG 1 cut(s) 220
TseI GCWGC 2 cut(s) 229, 329
TspDTI ATGAA 3 cut(s) 156, 165, 558
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 69, 108, 420
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.