Rmu_sc0009375.1_g000005

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009375.1
OG0016874
Physical Location & Seq
Forward (+)
9600 .. 10211
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009375.1_g000005.1.cds

Sequence Viewer

Length: 612 bp
atgagctcaaatattcagagaaggggttcttcttcttcttcttcttcttctcggaagcaaagaagaaggtctcgccctagaagccttaatccactcaacattaacgttgctgaagctaggagacaggtttaccatgccttgatcctccacagaacatcatcaaagtcatcatttcaatcttcttcatcctcatcatcctcgcatgatgttgtcagtggtacttctacgcagctattgcagtcgatgcctctgccggagccagtttggtcaaccacggcgccttcggtgccgcctcatgtgccatattctgggggaccagccatggaagcagcagacattgaatttgagtggggagagaaccaagcttcttcctatacttggtggttggcttttttgaagactttagatggtaataatagcactactagtactgttcctcaagagtttaagtacccactggcattggggagttctaatttgttttttggccggaggcctggtggtaattttaaagtcgaagaggcagatgagcagatcccttcaccagatgaatggttgataattccaaccacagaaaatcatgaaggtgagtttaatcatgtaattccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

203

Amino Acids

22.43

Weight (kDa)

6.6

Isoelectric Point (pI)

80.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 286
AccB7I CCANNNNNTGG 1 cut(s) 308
AciI CCGC 1 cut(s) 290
AclI AACGTT 1 cut(s) 105
AclWI GGATC 2 cut(s) 136, 529
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 3 cut(s) 220, 430, 452
AfiI CCNNNNNNNGG 2 cut(s) 308, 378
AgsI TTSAA 3 cut(s) 176, 341, 397
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 4 cut(s) 6, 116, 232, 365
AluI AGCT 4 cut(s) 6, 116, 232, 365
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 75, 115
AlwI GGATC 2 cut(s) 136, 529
AoxI GGCC 2 cut(s) 487, 494
ApeKI GCWGC 2 cut(s) 229, 329
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 534, 599
AvaII GGWCC 1 cut(s) 314
BanI GGYRCC 2 cut(s) 277, 286
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 241, 341
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 75, 115
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 3 cut(s) 78, 117, 426
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 3 cut(s) 230, 290, 330
BlsI GCNGC 3 cut(s) 231, 291, 331
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 258, 279, 288, 315
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 273, 321
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 378
Bse1I ACTGG 2 cut(s) 260, 462
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 273, 321
BseGI GGATG 2 cut(s) 185, 194
BseLI CCNNNNNNNGG 2 cut(s) 308, 378
BseNI ACTGG 2 cut(s) 260, 462
BseXI GCAGC 2 cut(s) 241, 341
BshFI GGCC 2 cut(s) 489, 496
BshNI GGYRCC 2 cut(s) 277, 286
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 254, 490
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 308, 378
BsmAI GTCTC 2 cut(s) 75, 115
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 2 cut(s) 489, 496
Bso31I GGTCTC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 141, 534
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 489, 496
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 4 cut(s) 258, 279, 288, 315
BspPI GGATC 2 cut(s) 136, 529
BspT107I GGYRCC 2 cut(s) 277, 286
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 260, 462
BssECI CCNNGG 2 cut(s) 273, 321
BssMI GATC 2 cut(s) 141, 534
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 433
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 1 cut(s) 278
BstAPI GCANNNNNTGC 2 cut(s) 235, 244
BstDSI CCRYGG 2 cut(s) 273, 321
BstF5I GGATG 2 cut(s) 185, 194
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 144, 537
BstMAI GTCTC 2 cut(s) 75, 115
BstMBI GATC 2 cut(s) 141, 534
BstMWI GCNNNNNNNGC 6 cut(s) 81, 235, 244, 286, 298, 326
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstV1I GCAGC 2 cut(s) 241, 341
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 1 cut(s) 534
BsuRI GGCC 2 cut(s) 489, 496
BtgI CCRYGG 2 cut(s) 273, 321
BtsCI GGATG 2 cut(s) 185, 194
BtsIMutI CAGTG 2 cut(s) 220, 455
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 3 cut(s) 219, 429, 451
CspCI CAANNNNNGTGG 2 cut(s) 444, 479
CviAII CATG 6 cut(s) 134, 203, 296, 322, 581, 599
CviQI GTAC 3 cut(s) 219, 429, 451
DinI GGCGCC 1 cut(s) 279
DpnI GATC 2 cut(s) 143, 536
DpnII GATC 2 cut(s) 141, 534
DraI TTTAAA 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 321
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 6 cut(s) 137, 206, 299, 325, 584, 602
FaiI YATR 8 cut(s) 135, 204, 297, 304, 323, 375, 582, 600
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 327
FatI CATG 6 cut(s) 133, 202, 295, 321, 580, 598
Fnu4HI GCNGC 3 cut(s) 230, 290, 330
FokI GGATG 2 cut(s) 172, 181
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 230, 290, 330
FspBI CTAG 3 cut(s) 78, 117, 426
GlaI GCGC 1 cut(s) 279
GluI GCNGC 3 cut(s) 230, 290, 330
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 489, 496
HapII CCGG 2 cut(s) 254, 490
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 6 cut(s) 137, 206, 299, 325, 584, 602
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 363
HpaII CCGG 2 cut(s) 254, 490
HphI GGTGA 2 cut(s) 534, 599
Hpy166II GTNNAC 2 cut(s) 130, 270
Hpy188I TCNGA 2 cut(s) 18, 54
Hpy188III TCNNGA 2 cut(s) 440, 581
Hpy8I GTNNAC 2 cut(s) 130, 270
HpyAV CCTTC 5 cut(s) 15, 60, 291, 549, 578
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 235, 244, 286, 298, 326
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 6 cut(s) 137, 206, 299, 325, 584, 602
HspAI GCGC 1 cut(s) 278
KasI GGCGCC 1 cut(s) 277
Kzo9I GATC 2 cut(s) 141, 534
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 241, 341
LweI GCATC 1 cut(s) 234
MaeI CTAG 3 cut(s) 78, 117, 426
MaeII ACGT 1 cut(s) 105
MalI GATC 2 cut(s) 143, 536
MboI GATC 2 cut(s) 141, 534
MflI RGATCY 1 cut(s) 534
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 341, 475, 505, 561, 603
Mly113I GGCGCC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 8 cut(s) 155, 199, 208, 258, 303, 447, 486, 514
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 5 cut(s) 87, 102, 447, 510, 594
MslI CAYNNNNRTG 1 cut(s) 585
MspI CCGG 2 cut(s) 254, 490
MspR9I CCNGG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 6 cut(s) 81, 235, 244, 286, 298, 326
NarI GGCGCC 1 cut(s) 278
NcoI CCATGG 1 cut(s) 321
NdeII GATC 2 cut(s) 141, 534
NlaIII CATG 6 cut(s) 137, 206, 299, 325, 584, 602
NlaIV GGNNCC 4 cut(s) 258, 279, 288, 315
PagI TCATGA 1 cut(s) 580
PceI AGGCCT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 3 cut(s) 231, 291, 331
PluTI GGCGCC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 4 cut(s) 258, 279, 288, 315
PspPI GGNCC 1 cut(s) 314
PsuI RGATCY 1 cut(s) 534
RsaI GTAC 3 cut(s) 220, 430, 452
RsaNI GTAC 3 cut(s) 219, 429, 451
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 87, 102, 447, 510, 594
SatI GCNGC 3 cut(s) 230, 290, 330
Sau3AI GATC 2 cut(s) 141, 534
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 71, 108, 118, 129, 234, 367, 589
SfaNI GCATC 1 cut(s) 234
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 5 cut(s) 341, 475, 505, 561, 603
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 1 cut(s) 290
SspDI GGCGCC 1 cut(s) 277
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 78, 117, 426
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 242, 516
TasI AATT 5 cut(s) 341, 475, 505, 561, 603
TatI WGTACW 1 cut(s) 428
TauI GCSGC 1 cut(s) 292
Tru1I TTAA 5 cut(s) 87, 102, 447, 510, 594
Tru9I TTAA 5 cut(s) 87, 102, 447, 510, 594
TscAI CASTG 2 cut(s) 220, 462
TseI GCWGC 2 cut(s) 229, 329
TspDTI ATGAA 3 cut(s) 174, 564, 597
TspRI CASTG 2 cut(s) 220, 462
Van91I CCANNNNNTGG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 78, 117, 426
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.