Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009534

Physical Location & Seq

Genomic Coordinates Reverse (-)

8912962 .. 8916584

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCATAGCCGCCGCCATTACGGTTCCTCTCACCTCCCCAACTCGCCAATCACTCACCTCCTCCCTACCTCATCAATCATCTCCTTCTCCCATCCTCAAATTCACCTCTCTCACAAAAACCGTCACCTCTCGTTTACGCCTAGCGGCGGCGGCGGCGTCTTCAATGACCGTCGGAGCAGCCGAGAAGGCGTCTCCGGCTTCCTTTCTGGACCGTAAAGAGGCCGGAATCCTTCACTTCGTCAAGTACCACGGCCTCGGCAACGACTTCATCCTGGTTGATAATAGGGATTCTTCGGAGCCTAAGGTTACTCCGGAGCAAGCAGTGAGGCTATGTGATCGGAACTTCGGGATTGGCGCCGATGGAGTCATCTTCGCGCTTCCTGGCATCAACGGCACTGATTATAGCATGAGGATTTTCAATTCCGATGGAAGCGAGCCCGAGATGTGTGGTAATGGAGTCCGGTGCTTTGCGAGATTCATCACAGAGCTTGAAAATCTACATGGGAACCAACGCTTTACAGTACATACTGGTGCTGGTCTAATTGTTCCCAAAATTGTAGATGATGGGCAGGTTAGAGTTGATATGGGGGAGCCAATTCTTAAAGCATCAGATGTACCCACTAAATTAGCTCCAAATAAAGACCATTCTGTTGTTAAGGCAGGTTTGGATGTTGATGGAGTAACCTGGAATGTAACTTGTGTCAGTATGGGAAATCCTCACTGTATAACTTTTGGTACAGAAGGAGGCCAGGATTTGCAGGTTGATGAATTGAATTTAGCTGAAATTGGTCCAAAATTTGAGCACCATGAGGTGTTTCCAGCAAGAACTAACACAGAATTTGTGCAAGTTTTCTCTCCTTCACACGTCAAAATGCGAGTCTGGGAGCGTGGTGCAGGAGCAACACTGGCTTGTGGAACTGGTGCTTGTGCTGTAGTTGTAGCAGCAGTTCTTGAGGGTCGTGCTGCGAGGAATTGCACGGTAGATTTACCGGGAGGACCATTGCAGATCGAGTGGAGTGAGGAGGACAATCATATATACATGACTGGCCCAGCCGAAGTAGTTTTTTACGGATCTGTTCCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008837 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009089 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016854 GO:0016855 GO:0019752 GO:0036361 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0047661 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DAP_epimerase

Protein Analysis

363

Amino Acids

38.64

Weight (kDa)

5.56

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAP_epimerase	PF01678	80 - 200	9.9e-34	Diaminopimelate epimerase
DAP_epimerase	PF01678	234 - 354	9.8e-33	Diaminopimelate epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53580
fragaria_vesca	FvH4_6g14490
malus_domestica	MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1
prunus_persica	Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1
pyrus_communis	pycom04g10870 pycom07g06870 pycom12g13120
rosa_chinensis	RchiOBHm_Chr3g0467571
rosa_laevigata	RLG00000024489
rosa_multiflora	Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016
rosa_roxburghii	Rroxscaffold_6G00413580
rosa_rugosa	Rorug03G0088200
rosa_samantha	Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700
rosa_wichuraiana	Rw3G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	562, 653, 751
AccB1I	GGYRCC	1 cut(s)	356
AccII	CGCG	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	6 cut(s)	12, 15, 146, 149, 152, 155
AclWI	GGATC	1 cut(s)	1081
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	101, 775, 797, 839
AcyI	GRCGYC	3 cut(s)	158, 191, 357
AfaI	GTAC	4 cut(s)	248, 525, 618, 739
AfiI	CCNNNNNNNGG	2 cut(s)	148, 220
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	4 cut(s)	165, 421, 494, 775
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	4 cut(s)	273, 382, 686, 750
AluBI	AGCT	3 cut(s)	490, 632, 782
AluI	AGCT	3 cut(s)	490, 632, 782
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	1081
Ama87I	CYCGRG	1 cut(s)	440
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	5 cut(s)	3, 222, 253, 748, 1048
ApeKI	GCWGC	3 cut(s)	179, 944, 965
ApoI	RAATTY	4 cut(s)	101, 775, 797, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	864, 896
AspLEI	GCGC	2 cut(s)	359, 379
AspS9I	GGNCC	4 cut(s)	211, 791, 998, 1049
AsuC2I	CCSGG	1 cut(s)	993
AsuHPI	GGTGA	4 cut(s)	25, 49, 97, 118
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	211, 791, 998
AxyI	CCTNAGG	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	807
BbvI	GCAGC	3 cut(s)	191, 952, 956
BccI	CCATC	5 cut(s)	101, 356, 422, 560, 671
BceAI	ACGGC	2 cut(s)	268, 409
BciT130I	CCWGG	4 cut(s)	275, 384, 688, 752
BcnI	CCSGG	1 cut(s)	993
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	933
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	3 cut(s)	562, 653, 751
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	9 cut(s)	12, 15, 147, 150, 153, 156, 180, 945, 966
BlsI	GCNGC	9 cut(s)	13, 16, 148, 151, 154, 157, 181, 946, 967
Bme1390I	CCNGG	5 cut(s)	275, 384, 688, 752, 993
Bme18I	GGWCC	3 cut(s)	211, 791, 998
BmeT110I	CYCGRG	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	4 cut(s)	211, 791, 998, 1049
BmiI	GGNNCC	5 cut(s)	27, 300, 358, 509, 594
BmrFI	CCNGG	5 cut(s)	275, 384, 688, 752, 993
BmsI	GCATC	2 cut(s)	396, 617
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	993
BsaHI	GRCGYC	3 cut(s)	158, 191, 357
BsaJI	CCNNGG	2 cut(s)	250, 256
BsaWI	WCCGGW	2 cut(s)	313, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 220
Bse1I	ACTGG	4 cut(s)	535, 912, 925, 1051
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	1001
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	4 cut(s)	275, 384, 688, 752
BseDI	CCNNGG	2 cut(s)	250, 256
BseGI	GGATG	3 cut(s)	93, 270, 676
BseLI	CCNNNNNNNGG	2 cut(s)	148, 220
BseMI	GCAATG	1 cut(s)	1001
BseNI	ACTGG	4 cut(s)	535, 912, 925, 1051
BseRI	GAGGAG	2 cut(s)	52, 1037
BseXI	GCAGC	3 cut(s)	191, 952, 956
BseYI	CCCAGC	1 cut(s)	1051
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	5 cut(s)	5, 224, 255, 750, 1050
BshNI	GGYRCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	807
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	5 cut(s)	197, 225, 314, 463, 992
BslI	CCNNNNNNNGG	2 cut(s)	148, 220
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsnI	GGCC	5 cut(s)	5, 224, 255, 750, 1050
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	441, 807
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	337, 1008, 1073
BspACI	CCGC	6 cut(s)	12, 15, 146, 149, 152, 155
BspANI	GGCC	5 cut(s)	5, 224, 255, 750, 1050
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	5 cut(s)	27, 300, 358, 509, 594
BspMI	ACCTGC	3 cut(s)	562, 653, 751
BspPI	GGATC	1 cut(s)	1081
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	1001
BsrI	ACTGG	4 cut(s)	535, 912, 925, 1051
BssECI	CCNNGG	2 cut(s)	250, 256
BssMI	GATC	3 cut(s)	337, 1008, 1073
BssNI	GRCGYC	3 cut(s)	158, 191, 357
Bst2UI	CCWGG	4 cut(s)	275, 384, 688, 752
Bst4CI	ACNGT	7 cut(s)	25, 124, 172, 215, 523, 725, 982
BstACI	GRCGYC	3 cut(s)	158, 191, 357
BstC8I	GCNNGC	2 cut(s)	321, 437
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	93, 270, 676
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	2 cut(s)	359, 379
BstKTI	GATC	3 cut(s)	340, 1011, 1076
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	3 cut(s)	337, 1008, 1073
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 152, 155, 188, 197, 393, 908
BstNI	CCWGG	4 cut(s)	275, 384, 688, 752
BstSCI	CCNGG	5 cut(s)	273, 382, 686, 750, 991
BstSFI	CTRYAG	1 cut(s)	933
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	191, 952, 956
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	1073
BstYI	RGATCY	1 cut(s)	1073
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	5 cut(s)	5, 224, 255, 750, 1050
BtgI	CCRYGG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	3 cut(s)	93, 270, 676
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	4 cut(s)	330, 396, 721, 905
BveI	ACCTGC	3 cut(s)	562, 653, 751
Cac8I	GCNNGC	2 cut(s)	321, 437
CfoI	GCGC	2 cut(s)	359, 379
Cfr13I	GGNCC	4 cut(s)	211, 791, 998, 1049
CseI	GACGC	2 cut(s)	147, 180
Csp6I	GTAC	4 cut(s)	247, 524, 617, 738
CviAII	CATG	4 cut(s)	409, 503, 809, 1042
CviQI	GTAC	4 cut(s)	247, 524, 617, 738
DdeI	CTNAG	1 cut(s)	303
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	3 cut(s)	339, 1010, 1075
DpnII	GATC	3 cut(s)	337, 1008, 1073
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	211, 791, 998
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	440
EcoRII	CCWGG	4 cut(s)	273, 382, 686, 750
EcoT38I	GRGCYC	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	4 cut(s)	412, 506, 812, 1045
FatI	CATG	4 cut(s)	408, 502, 808, 1041
Fnu4HI	GCNGC	9 cut(s)	12, 15, 147, 150, 153, 156, 180, 945, 966
FokI	GGATG	3 cut(s)	80, 257, 683
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	9 cut(s)	12, 15, 147, 150, 153, 156, 180, 945, 966
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	2 cut(s)	358, 378
GluI	GCNGC	9 cut(s)	12, 15, 147, 150, 153, 156, 180, 945, 966
GsaI	CCCAGC	1 cut(s)	1055
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	5, 224, 255, 750, 1050
HapII	CCGG	5 cut(s)	197, 225, 314, 463, 992
HgaI	GACGC	2 cut(s)	147, 180
HhaI	GCGC	2 cut(s)	359, 379
Hin1I	GRCGYC	3 cut(s)	158, 191, 357
Hin1II	CATG	4 cut(s)	412, 506, 812, 1045
Hin6I	GCGC	2 cut(s)	357, 377
HinP1I	GCGC	2 cut(s)	357, 377
HinfI	GANTC	6 cut(s)	228, 290, 366, 459, 477, 879
HpaII	CCGG	5 cut(s)	197, 225, 314, 463, 992
HphI	GGTGA	4 cut(s)	25, 49, 97, 118
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	5 cut(s)	176, 298, 342, 427, 613
Hpy188III	TCNNGA	4 cut(s)	209, 314, 349, 953
Hpy8I	GTNNAC	1 cut(s)	137
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	5 cut(s)	96, 181, 242, 737, 870
HpyCH4III	ACNGT	7 cut(s)	25, 124, 172, 215, 523, 725, 982
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	5 cut(s)	760, 847, 896, 978, 1006
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 152, 155, 188, 197, 393, 908
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	867
Hsp92I	GRCGYC	3 cut(s)	158, 191, 357
Hsp92II	CATG	4 cut(s)	412, 506, 812, 1045
HspAI	GCGC	2 cut(s)	357, 377
KasI	GGCGCC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	337, 1008, 1073
LmnI	GCTCC	7 cut(s)	176, 298, 316, 592, 637, 886, 899
Lsp1109I	GCAGC	3 cut(s)	191, 952, 956
LweI	GCATC	2 cut(s)	396, 617
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	4 cut(s)	124, 307, 682, 694
MalI	GATC	3 cut(s)	339, 1010, 1075
MboI	GATC	3 cut(s)	337, 1008, 1073
MboII	GAAGA	3 cut(s)	153, 285, 364
MflI	RGATCY	1 cut(s)	1073
MhlI	GDGCHC	2 cut(s)	441, 807
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	3 cut(s)	375, 468, 888
MmeI	TCCRAC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	603, 657
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	5 cut(s)	197, 225, 314, 463, 992
MspR9I	CCNGG	5 cut(s)	275, 384, 688, 752, 993
MvaI	CCWGG	4 cut(s)	275, 384, 688, 752
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	7 cut(s)	11, 152, 155, 188, 197, 393, 908
NarI	GGCGCC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	993
NdeII	GATC	3 cut(s)	337, 1008, 1073
NlaIII	CATG	4 cut(s)	412, 506, 812, 1045
NlaIV	GGNNCC	5 cut(s)	27, 300, 358, 509, 594
NmeAIII	GCCGAG	2 cut(s)	208, 237
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	228, 290, 477
PkrI	GCNGC	9 cut(s)	13, 16, 148, 151, 154, 157, 181, 946, 967
PleI	GAGTC	3 cut(s)	374, 467, 887
PluTI	GGCGCC	1 cut(s)	360
PpsI	GAGTC	3 cut(s)	374, 467, 887
Psp6I	CCWGG	4 cut(s)	273, 382, 686, 750
PspFI	CCCAGC	1 cut(s)	1051
PspGI	CCWGG	4 cut(s)	273, 382, 686, 750
PspN4I	GGNNCC	5 cut(s)	27, 300, 358, 509, 594
PspPI	GGNCC	4 cut(s)	211, 791, 998, 1049
PsrI	GAACNNNNNNTAC	2 cut(s)	933, 965
PsuI	RGATCY	1 cut(s)	1073
RsaI	GTAC	4 cut(s)	248, 525, 618, 739
RsaNI	GTAC	4 cut(s)	247, 524, 617, 738
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	603, 657
SatI	GCNGC	9 cut(s)	12, 15, 147, 150, 153, 156, 180, 945, 966
Sau3AI	GATC	3 cut(s)	337, 1008, 1073
Sau96I	GGNCC	4 cut(s)	211, 791, 998, 1049
SchI	GAGTC	3 cut(s)	375, 468, 888
ScrFI	CCNGG	5 cut(s)	275, 384, 688, 752, 993
SduI	GDGCHC	2 cut(s)	441, 807
SfaNI	GCATC	2 cut(s)	396, 617
SfcI	CTRYAG	1 cut(s)	933
SfoI	GGCGCC	1 cut(s)	358
SinI	GGWCC	3 cut(s)	211, 791, 998
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SsiI	CCGC	6 cut(s)	12, 15, 146, 149, 152, 155
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	5 cut(s)	273, 382, 686, 750, 991
TaaI	ACNGT	7 cut(s)	25, 124, 172, 215, 523, 725, 982
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	1 cut(s)	1011
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	6 cut(s)	14, 17, 149, 152, 155, 158
TfiI	GAWTC	3 cut(s)	228, 290, 477
Tru1I	TTAA	2 cut(s)	603, 657
Tru9I	TTAA	2 cut(s)	603, 657
TscAI	CASTG	4 cut(s)	330, 403, 728, 912
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	179, 944, 965
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	259, 469, 783
TspGWI	ACGGA	1 cut(s)	1086
TspRI	CASTG	4 cut(s)	330, 403, 728, 912
VpaK11BI	GGWCC	3 cut(s)	211, 791, 998
XapI	RAATTY	4 cut(s)	101, 775, 797, 839
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.