Rroxscaffold_6G00413580

Diaminopimelate epimerase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
35952506 .. 35956244
3739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413580.1

Sequence Viewer

Length: 1098 bp
ATGGCCATAGCCGCCGCCATTTCGGTGCCTCTCACATCCCCAACTCGCCGATCACTCACCTCCTTCCTTCCTCATCAATCGTCTCCTTCTCCTATTCTCCATTTCAACTCTATCAGAAAAACCGTTAGGCCTCGTTTACGCCTCGTGGCGGCGGCGGCGGTGGCGTCTTCAATGAGCGTCGAAGCAGCCGAAAAGGCGTCGCCGGCGTCTTTTCTGGACCGGAGAGAGGCCGGAATCCTTCACTTCGTCAAGTACCAGGGCCTCGGCAACGACTTCATCCTGGTTGATAATAGGGATTCTTCGGAGCCTAAGGTTACTCCGGAGCAAGCAGTGAGGCTATGTGATCGGAACTTCGGGATTGGCGCCGATGGAGTCATCTTCGCGCTTCCTGGCATCAATGGCACTGATTATACCATGAGGATTTTCAATTCCGATGGGAGCGAGCCGGAGATGTGTGGTAATGGAGTCCGGTGCTTTGCTAGATTCATCACAGAGCTTGAGAATCTACATGGGAACCAACGCTTTACAGTACATACTGGTGCTGGTCTAATTGTTCCAGAAATTGTGGATGATGGGAAGGTTAGAGTTGATATGGGGGAGCCAATTCTTAAAGCATCAGATGTGCCCACTAAATTACCTCCAAACAAAGATCATTCTGTTGTTAAGGCAGGTTTGGATGTTGATGGAGTAACCTGGAATGTAACTTGTGTCAGTATGGGAAATCCTCATTGTATAACTTTTGGTACAGAAGGAGGCCAGAATTTGCAGGTTGATGAATTGAATTTAGCTGAAATTGGTCCAAAATTTGAGCACCATGAGGTGTTTCCAGCAAGAACTAACACAGAATTTGTGCAAGTTTTCACTCCTTCACACCTCAAAATGCGAGTCTGGGAGCGTGGTGCAGGAGCAACACTGGCTTGTGGAACTGGTGCTTGTGCTGTAGTTGTAGCAGCAGTTCTTGAGGGTCGTGCTGCGCGGCAGAATTGCACGGTTGATTTACCCGGAGGACCATTGCAAATCGAGTGGAGAGAGGAGGACAATCATATTTACATGACCGGCCCAGCCGAAGTAGTTTTTTACGGATCTGTTCCCCTGTAA

Protein Analysis

365

Amino Acids

39.4

Weight (kDa)

5.78

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAP_epimerase PF01678 82 - 202 2.5e-33 Diaminopimelate epimerase
DAP_epimerase PF01678 236 - 357 1.1e-32 Diaminopimelate epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 659, 757
AccB1I GGYRCC 2 cut(s) 25, 362
AccII CGCG 2 cut(s) 383, 976
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 7 cut(s) 12, 15, 149, 152, 155, 158, 976
AclWI GGATC 1 cut(s) 1090
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 760, 781, 803, 845
AcyI GRCGYC 4 cut(s) 164, 197, 206, 363
AfaI GTAC 3 cut(s) 254, 531, 745
AfiI CCNNNNNNNGG 2 cut(s) 148, 226
AgsI TTSAA 4 cut(s) 106, 171, 427, 781
AjnI CCWGG 4 cut(s) 255, 279, 388, 692
AluBI AGCT 2 cut(s) 496, 788
AluI AGCT 2 cut(s) 496, 788
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 1090
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 6 cut(s) 3, 128, 228, 259, 754, 1057
ApeKI GCWGC 3 cut(s) 185, 950, 971
ApoI RAATTY 4 cut(s) 760, 781, 803, 845
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspLEI GCGC 3 cut(s) 365, 385, 976
AspS9I GGNCC 5 cut(s) 217, 259, 797, 1007, 1058
AsuC2I CCSGG 1 cut(s) 1002
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 3 cut(s) 217, 797, 1007
AxyI CCTNAGG 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 627
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 25, 362
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 3 cut(s) 197, 958, 962
BccI CCATC 4 cut(s) 362, 428, 566, 677
BciT130I CCWGG 4 cut(s) 257, 281, 390, 694
BcnI CCSGG 1 cut(s) 1002
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 939
BfoI RGCGCY 1 cut(s) 366
BfuAI ACCTGC 2 cut(s) 659, 757
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 9 cut(s) 12, 15, 150, 153, 156, 186, 951, 972, 977
BlsI GCNGC 9 cut(s) 13, 16, 151, 154, 157, 187, 952, 973, 978
Bme1390I CCNGG 5 cut(s) 257, 281, 390, 694, 1002
Bme18I GGWCC 3 cut(s) 217, 797, 1007
BmgT120I GGNCC 5 cut(s) 217, 259, 797, 1007, 1058
BmiI GGNNCC 5 cut(s) 27, 306, 364, 515, 600
BmrFI CCNGG 5 cut(s) 257, 281, 390, 694, 1002
BmsI GCATC 2 cut(s) 402, 623
BpiI GAAGAC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 518, 980
BpuMI CCSGG 1 cut(s) 1002
BsaHI GRCGYC 4 cut(s) 164, 197, 206, 363
BsaJI CCNNGG 2 cut(s) 256, 262
BsaWI WCCGGW 3 cut(s) 219, 319, 468
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 226
Bse118I RCCGGY 2 cut(s) 202, 1055
Bse1I ACTGG 3 cut(s) 541, 918, 931
Bse21I CCTNAGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 1010
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 4 cut(s) 257, 281, 390, 694
BseDI CCNNGG 2 cut(s) 256, 262
BseGI GGATG 4 cut(s) 35, 276, 574, 682
BseLI CCNNNNNNNGG 2 cut(s) 148, 226
BseMI GCAATG 1 cut(s) 1010
BseNI ACTGG 3 cut(s) 541, 918, 931
BseRI GAGGAG 1 cut(s) 1046
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 3 cut(s) 197, 958, 962
BseYI CCCAGC 1 cut(s) 1060
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 2 cut(s) 383, 976
BshFI GGCC 6 cut(s) 5, 130, 230, 261, 756, 1059
BshNI GGYRCC 2 cut(s) 25, 362
BsiHKAI GWGCWC 1 cut(s) 813
BsiSI CCGG 8 cut(s) 203, 220, 231, 320, 446, 469, 1002, 1056
BslI CCNNNNNNNGG 2 cut(s) 148, 226
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 6 cut(s) 5, 130, 230, 261, 756, 1059
Bsp1286I GDGCHC 2 cut(s) 627, 813
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 50, 343, 649, 1082
BspACI CCGC 7 cut(s) 12, 15, 149, 152, 155, 158, 976
BspANI GGCC 6 cut(s) 5, 130, 230, 261, 756, 1059
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 2 cut(s) 383, 976
BspLI GGNNCC 5 cut(s) 27, 306, 364, 515, 600
BspMI ACCTGC 2 cut(s) 659, 757
BspPI GGATC 1 cut(s) 1090
BspT107I GGYRCC 2 cut(s) 25, 362
BsrDI GCAATG 1 cut(s) 1010
BsrFI RCCGGY 2 cut(s) 202, 1055
BsrI ACTGG 3 cut(s) 541, 918, 931
BssAI RCCGGY 2 cut(s) 202, 1055
BssECI CCNNGG 2 cut(s) 256, 262
BssMI GATC 4 cut(s) 50, 343, 649, 1082
BssNI GRCGYC 4 cut(s) 164, 197, 206, 363
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 4 cut(s) 257, 281, 390, 694
Bst4CI ACNGT 3 cut(s) 124, 529, 991
BstACI GRCGYC 4 cut(s) 164, 197, 206, 363
BstC8I GCNNGC 3 cut(s) 204, 327, 443
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 35, 276, 574, 682
BstFNI CGCG 2 cut(s) 383, 976
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 3 cut(s) 365, 385, 976
BstKTI GATC 4 cut(s) 53, 346, 652, 1085
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 4 cut(s) 50, 343, 649, 1082
BstMWI GCNNNNNNNGC 7 cut(s) 11, 155, 161, 194, 203, 399, 914
BstNI CCWGG 4 cut(s) 257, 281, 390, 694
BstSCI CCNGG 5 cut(s) 255, 279, 388, 692, 1000
BstSFI CTRYAG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 627
BstUI CGCG 2 cut(s) 383, 976
BstV1I GCAGC 3 cut(s) 197, 958, 962
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 6 cut(s) 5, 130, 230, 261, 756, 1059
BtsCI GGATG 4 cut(s) 35, 276, 574, 682
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 336, 402, 911
BveI ACCTGC 2 cut(s) 659, 757
Cac8I GCNNGC 3 cut(s) 204, 327, 443
CfoI GCGC 3 cut(s) 365, 385, 976
Cfr10I RCCGGY 2 cut(s) 202, 1055
Cfr13I GGNCC 5 cut(s) 217, 259, 797, 1007, 1058
CseI GACGC 4 cut(s) 153, 166, 186, 195
Csp6I GTAC 3 cut(s) 253, 530, 744
CspCI CAANNNNNGTGG 2 cut(s) 1004, 1039
CviAII CATG 4 cut(s) 415, 509, 815, 1051
CviQI GTAC 3 cut(s) 253, 530, 744
DdeI CTNAG 1 cut(s) 309
DinI GGCGCC 1 cut(s) 364
DpnI GATC 4 cut(s) 52, 345, 651, 1084
DpnII GATC 4 cut(s) 50, 343, 649, 1082
EaeI YGGCCR 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 130
Eco47I GGWCC 3 cut(s) 217, 797, 1007
Eco81I CCTNAGG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 4 cut(s) 255, 279, 388, 692
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 4 cut(s) 418, 512, 818, 1054
FatI CATG 4 cut(s) 414, 508, 814, 1050
Fnu4HI GCNGC 9 cut(s) 12, 15, 150, 153, 156, 186, 951, 972, 977
FokI GGATG 4 cut(s) 22, 263, 581, 689
Fsp4HI GCNGC 9 cut(s) 12, 15, 150, 153, 156, 186, 951, 972, 977
FspBI CTAG 1 cut(s) 480
GlaI GCGC 3 cut(s) 364, 384, 975
GluI GCNGC 9 cut(s) 12, 15, 150, 153, 156, 186, 951, 972, 977
GsaI CCCAGC 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 6 cut(s) 5, 130, 230, 261, 756, 1059
HapII CCGG 8 cut(s) 203, 220, 231, 320, 446, 469, 1002, 1056
HgaI GACGC 4 cut(s) 153, 166, 186, 195
HhaI GCGC 3 cut(s) 365, 385, 976
Hin1I GRCGYC 4 cut(s) 164, 197, 206, 363
Hin1II CATG 4 cut(s) 418, 512, 818, 1054
Hin6I GCGC 3 cut(s) 363, 383, 974
HinP1I GCGC 3 cut(s) 363, 383, 974
HinfI GANTC 7 cut(s) 234, 296, 372, 465, 483, 502, 885
HpaII CCGG 8 cut(s) 203, 220, 231, 320, 446, 469, 1002, 1056
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 5 cut(s) 116, 304, 348, 433, 619
Hpy188III TCNNGA 5 cut(s) 215, 320, 355, 557, 959
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 182, 202
HpyAV CCTTC 7 cut(s) 73, 77, 96, 248, 571, 743, 876
HpyCH4III ACNGT 3 cut(s) 124, 529, 991
HpyCH4V TGCA 5 cut(s) 766, 853, 902, 987, 1015
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 155, 161, 194, 203, 399, 914
HpyF3I CTNAG 1 cut(s) 309
Hsp92I GRCGYC 4 cut(s) 164, 197, 206, 363
Hsp92II CATG 4 cut(s) 418, 512, 818, 1054
HspAI GCGC 3 cut(s) 363, 383, 974
KasI GGCGCC 1 cut(s) 362
Kpn2I TCCGGA 1 cut(s) 319
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
Kzo9I GATC 4 cut(s) 50, 343, 649, 1082
LmnI GCTCC 6 cut(s) 304, 322, 438, 598, 892, 905
Lsp1109I GCAGC 3 cut(s) 197, 958, 962
LweI GCATC 2 cut(s) 402, 623
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 313, 688, 700
MalI GATC 4 cut(s) 52, 345, 651, 1084
MboI GATC 4 cut(s) 50, 343, 649, 1082
MboII GAAGA 3 cut(s) 159, 291, 370
MflI RGATCY 1 cut(s) 1082
MhlI GDGCHC 2 cut(s) 627, 813
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 3 cut(s) 381, 474, 894
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 202
MroI TCCGGA 1 cut(s) 319
MroNI GCCGGC 1 cut(s) 202
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 609, 663
MslI CAYNNNNRTG 2 cut(s) 23, 537
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 8 cut(s) 203, 220, 231, 320, 446, 469, 1002, 1056
MspR9I CCNGG 5 cut(s) 257, 281, 390, 694, 1002
MvaI CCWGG 4 cut(s) 257, 281, 390, 694
MvnI CGCG 2 cut(s) 383, 976
MwoI GCNNNNNNNGC 7 cut(s) 11, 155, 161, 194, 203, 399, 914
NaeI GCCGGC 1 cut(s) 204
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 1 cut(s) 1002
NdeII GATC 4 cut(s) 50, 343, 649, 1082
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 4 cut(s) 418, 512, 818, 1054
NlaIV GGNNCC 5 cut(s) 27, 306, 364, 515, 600
NmeAIII GCCGAG 1 cut(s) 243
PceI AGGCCT 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 204
PfeI GAWTC 4 cut(s) 234, 296, 483, 502
PkrI GCNGC 9 cut(s) 13, 16, 151, 154, 157, 187, 952, 973, 978
PleI GAGTC 3 cut(s) 380, 473, 893
PluTI GGCGCC 1 cut(s) 366
PpsI GAGTC 3 cut(s) 380, 473, 893
Psp6I CCWGG 4 cut(s) 255, 279, 388, 692
PspFI CCCAGC 1 cut(s) 1060
PspGI CCWGG 4 cut(s) 255, 279, 388, 692
PspN4I GGNNCC 5 cut(s) 27, 306, 364, 515, 600
PspPI GGNCC 5 cut(s) 217, 259, 797, 1007, 1058
PsrI GAACNNNNNNTAC 2 cut(s) 939, 971
PsuI RGATCY 1 cut(s) 1082
RsaI GTAC 3 cut(s) 254, 531, 745
RsaNI GTAC 3 cut(s) 253, 530, 744
RseI CAYNNNNRTG 2 cut(s) 23, 537
SaqAI TTAA 2 cut(s) 609, 663
SatI GCNGC 9 cut(s) 12, 15, 150, 153, 156, 186, 951, 972, 977
Sau3AI GATC 4 cut(s) 50, 343, 649, 1082
Sau96I GGNCC 5 cut(s) 217, 259, 797, 1007, 1058
SchI GAGTC 3 cut(s) 381, 474, 894
ScrFI CCNGG 5 cut(s) 257, 281, 390, 694, 1002
SduI GDGCHC 2 cut(s) 627, 813
SfaNI GCATC 2 cut(s) 402, 623
SfcI CTRYAG 1 cut(s) 939
SfoI GGCGCC 1 cut(s) 364
SgrAI CRCCGGYG 1 cut(s) 202
SinI GGWCC 3 cut(s) 217, 797, 1007
SmiMI CAYNNNNRTG 2 cut(s) 23, 537
SmlI CTYRAG 2 cut(s) 497, 959
SmoI CTYRAG 2 cut(s) 497, 959
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 7 cut(s) 12, 15, 149, 152, 155, 158, 976
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 1 cut(s) 480
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 5 cut(s) 255, 279, 388, 692, 1000
TaaI ACNGT 3 cut(s) 124, 529, 991
TaqI TCGA 2 cut(s) 180, 1020
TatI WGTACW 1 cut(s) 529
TauI GCSGC 6 cut(s) 14, 17, 152, 155, 158, 979
TfiI GAWTC 4 cut(s) 234, 296, 483, 502
Tru1I TTAA 2 cut(s) 609, 663
Tru9I TTAA 2 cut(s) 609, 663
TscAI CASTG 3 cut(s) 336, 409, 918
TseI GCWGC 3 cut(s) 185, 950, 971
TspDTI ATGAA 3 cut(s) 265, 475, 789
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 3 cut(s) 336, 409, 918
VpaK11BI GGWCC 3 cut(s) 217, 797, 1007
XapI RAATTY 4 cut(s) 760, 781, 803, 845
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.