Diaminopimelate epimerase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53580 |
| fragaria_vesca | FvH4_6g14490 |
| malus_domestica | MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1 |
| prunus_persica | Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1 |
| pyrus_communis | pycom04g10870 pycom07g06870 pycom12g13120 |
| rosa_chinensis | RchiOBHm_Chr3g0467571 |
| rosa_laevigata | RLG00000024489 |
| rosa_multiflora | Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00413580 |
| rosa_rugosa | Rorug03G0088200 |
| rosa_samantha | Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700 |
| rosa_wichuraiana | Rw3G012930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 144 |
| AciI | CCGC | 1 cut(s) | 142 |
| AcoI | YGGCCR | 1 cut(s) | 185 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 147, 342 |
| AgsI | TTSAA | 3 cut(s) | 11, 163, 232 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 79, 111, 245, 277 |
| AluBI | AGCT | 3 cut(s) | 52, 121, 348 |
| AluI | AGCT | 3 cut(s) | 52, 121, 348 |
| Alw26I | GTCTC | 1 cut(s) | 311 |
| AoxI | GGCC | 1 cut(s) | 185 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 167 |
| AsuHPI | GGTGA | 1 cut(s) | 112 |
| BalI | TGGCCA | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 233 |
| BcoDI | GTCTC | 1 cut(s) | 311 |
| BfaI | CTAG | 2 cut(s) | 147, 342 |
| BfmI | CTRYAG | 1 cut(s) | 174 |
| BlpI | GCTNAGC | 1 cut(s) | 53 |
| BmiI | GGNNCC | 1 cut(s) | 333 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 53 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 147, 342 |
| Bse1I | ACTGG | 1 cut(s) | 284 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 147, 342 |
| BseMII | CTCAG | 1 cut(s) | 284 |
| BseNI | ACTGG | 1 cut(s) | 284 |
| BshFI | GGCC | 1 cut(s) | 187 |
| BslFI | GGGAC | 1 cut(s) | 124 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 147, 342 |
| BsmAI | GTCTC | 1 cut(s) | 311 |
| BsmFI | GGGAC | 1 cut(s) | 124 |
| BsnI | GGCC | 1 cut(s) | 187 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 53 |
| BspACI | CCGC | 1 cut(s) | 142 |
| BspANI | GGCC | 1 cut(s) | 187 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 333 |
| BsrBI | CCGCTC | 1 cut(s) | 144 |
| BsrI | ACTGG | 1 cut(s) | 284 |
| Bst4CI | ACNGT | 2 cut(s) | 212, 322 |
| Bst6I | CTCTTC | 1 cut(s) | 218 |
| BstDEI | CTNAG | 2 cut(s) | 53, 270 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 340 |
| BstMAI | GTCTC | 1 cut(s) | 311 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 338 |
| BstSFI | CTRYAG | 1 cut(s) | 174 |
| BsuRI | GGCC | 1 cut(s) | 187 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 278 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 7 cut(s) | 52, 121, 136, 187, 280, 332, 348 |
| CviKI_1 | RGCY | 7 cut(s) | 52, 121, 136, 187, 280, 332, 348 |
| DdeI | CTNAG | 2 cut(s) | 53, 270 |
| EaeI | YGGCCR | 1 cut(s) | 185 |
| Eam1104I | CTCTTC | 1 cut(s) | 218 |
| EarI | CTCTTC | 1 cut(s) | 218 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 340 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 4 cut(s) | 17, 45, 93, 339 |
| FaqI | GGGAC | 1 cut(s) | 124 |
| FatI | CATG | 1 cut(s) | 15 |
| FauI | CCCGC | 1 cut(s) | 149 |
| FspBI | CTAG | 2 cut(s) | 147, 342 |
| HaeIII | GGCC | 1 cut(s) | 187 |
| Hin1II | CATG | 1 cut(s) | 19 |
| HphI | GGTGA | 1 cut(s) | 112 |
| Hpy166II | GTNNAC | 1 cut(s) | 156 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 84 |
| Hpy8I | GTNNAC | 1 cut(s) | 156 |
| HpyAV | CCTTC | 2 cut(s) | 81, 157 |
| HpyCH4III | ACNGT | 2 cut(s) | 212, 322 |
| HpyCH4V | TGCA | 1 cut(s) | 200 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 338 |
| HpyF3I | CTNAG | 2 cut(s) | 53, 270 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| LmnI | GCTCC | 2 cut(s) | 337, 345 |
| LpnPI | CCDG | 3 cut(s) | 69, 178, 297 |
| MaeI | CTAG | 2 cut(s) | 147, 342 |
| MbiI | CCGCTC | 1 cut(s) | 144 |
| MboII | GAAGA | 4 cut(s) | 82, 115, 118, 235 |
| MlsI | TGGCCA | 1 cut(s) | 187 |
| MluCI | AATT | 1 cut(s) | 308 |
| MluNI | TGGCCA | 1 cut(s) | 187 |
| MnlI | CCTC | 2 cut(s) | 20, 208 |
| Mox20I | TGGCCA | 1 cut(s) | 187 |
| MroXI | GAANNNNTTC | 1 cut(s) | 167 |
| MscI | TGGCCA | 1 cut(s) | 187 |
| Msp20I | TGGCCA | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 338 |
| NlaIII | CATG | 1 cut(s) | 19 |
| NlaIV | GGNNCC | 1 cut(s) | 333 |
| PdmI | GAANNNNTTC | 1 cut(s) | 167 |
| PspN4I | GGNNCC | 1 cut(s) | 333 |
| SetI | ASST | 7 cut(s) | 31, 54, 83, 123, 168, 219, 350 |
| SfcI | CTRYAG | 1 cut(s) | 174 |
| Sse9I | AATT | 1 cut(s) | 308 |
| SsiI | CCGC | 1 cut(s) | 142 |
| SspI | AATATT | 1 cut(s) | 256 |
| SspMI | CTAG | 2 cut(s) | 147, 342 |
| TaaI | ACNGT | 2 cut(s) | 212, 322 |
| TasI | AATT | 1 cut(s) | 308 |
| TscAI | CASTG | 2 cut(s) | 217, 278 |
| TspDTI | ATGAA | 2 cut(s) | 125, 288 |
| TspRI | CASTG | 2 cut(s) | 217, 278 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 340 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XmnI | GAANNNNTTC | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 147, 342 |