pycom07g06870

Diaminopimelate epimerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
6153885 .. 6156985
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06870.8

Sequence Viewer

Length: 1059 bp
ATGGGAGCCATAGCCGCCACCATCTCACTGCACCTCACTTCCCCAACTCGCCGCTCCCTCACATTCTTCACCGCCTCTCTTCGACCTTCTTCTCCGATTCTAAAGCTCAACTCTTTCCATGCAGCTGCCTCGCCGCGAGCTACCAGTCTTCGCGTGTCGGCGGTATCATGTTCCATGAGCGTGGAATCCGTCGAGAAGGCCTCCCCCGCCTTCTTTCTCGACCGCATAGAATCCGGATTCCTCCACTTCGTCAAGTACCACGGCCTCGGCAACGACTTCATCCTGGTTGATAACAGAGATTCTTCGGAGCCTAAAATCAGTCCGGAGCAGGCGGCGAAGCTGTGTGATCGGAACTTTGGGATTGGCGCCGACGGAGTGATCTTCGCGCTGCCGGGCATCAACGGCACTGATTATACAATGAGGATTTACAATTCTGATGGAAGCGAGCCCGAGATGTGTGGTAATGGAGTCCGGTGTTTTGCCAGATTCATTGCCGAGCTCGAGAATTTGCAGGGACGGCATAGCTTTAAAGTACATACTGGTGCTGGTCTAATTGTTCCGGAAATTCAAGAAGATGGGAAGGTTAAAGTTGATATGGGGGAACCAATTCTTAAGGCTTCAGACGTACCTACAAGACTGCCTGCAAACAAAGATCAATCCGTCGTTAAGTTGGGTCTGAATGTGGATGGAGTAACCTGGAATGTAACCTGTGTTAGTATGGGAAATCCTCATTGCATAACTTTTGGTACAGAAGGAGGCCAGAATTTGAAGGTTGATGAATTGAAGTTGGCTGAAATTGGCCCCAAGTTTGAGAATCATGAGGTGTTTCCAGCACGAACTAACACAGAATTTGTGCAAGTTTTCACTCGTTCGCACCTAAAGATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACACTTGCTTGCGGAACTGGAGCTTGTGCTGTAGTGGTTGCCGCAGTTCTTGAGGGTCGTGCTGAGCGAAACTGCACGGTTGATCGATCTTACCGGGGGGGCCATTGCAGATTGAGTGGAGAGAGGAGAACAATCACATCTACATGA

Protein Analysis

353

Amino Acids

38.06

Weight (kDa)

8.03

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 54
AccII CGCG 3 cut(s) 136, 153, 386
AccIII TCCGGA 3 cut(s) 233, 322, 559
AcsI RAATTY 4 cut(s) 505, 564, 763, 848
AcuI CTGAAG 1 cut(s) 603
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 4 cut(s) 257, 534, 627, 748
AflII CTTAAG 1 cut(s) 611
AgsI TTSAA 3 cut(s) 569, 769, 784
AjnI CCWGG 2 cut(s) 282, 695
AluBI AGCT 7 cut(s) 106, 125, 140, 340, 499, 525, 935
AluI AGCT 7 cut(s) 106, 125, 140, 340, 499, 525, 935
Alw21I GWGCWC 1 cut(s) 501
Ama87I CYCGRG 2 cut(s) 449, 500
Aor13HI TCCGGA 3 cut(s) 233, 322, 559
AoxI GGCC 5 cut(s) 198, 262, 757, 799, 1012
ApeKI GCWGC 3 cut(s) 122, 125, 388
ApoI RAATTY 4 cut(s) 505, 564, 763, 848
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 2 cut(s) 368, 388
AspS9I GGNCC 2 cut(s) 800, 1012
AsuC2I CCSGG 2 cut(s) 393, 1007
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 2 cut(s) 449, 500
BanI GGYRCC 1 cut(s) 365
BanII GRGCYC 2 cut(s) 450, 501
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 112, 134, 375
BccI CCATC 4 cut(s) 29, 431, 569, 680
BceAI ACGGC 3 cut(s) 277, 418, 533
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 2 cut(s) 284, 697
BcnI CCSGG 2 cut(s) 393, 1007
BfmI CTRYAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 611
BisI GCNGC 8 cut(s) 15, 52, 123, 126, 134, 333, 389, 954
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 8 cut(s) 16, 53, 124, 127, 135, 334, 390, 955
Bme1390I CCNGG 4 cut(s) 284, 393, 697, 1007
BmeT110I CYCGRG 2 cut(s) 449, 500
BmgT120I GGNCC 2 cut(s) 800, 1012
BmiI GGNNCC 6 cut(s) 7, 309, 367, 603, 802, 1013
BmrFI CCNGG 4 cut(s) 284, 393, 697, 1007
BmsI GCATC 2 cut(s) 405, 873
BpiI GAAGAC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 951
Bpu1102I GCTNAGC 1 cut(s) 975
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 2 cut(s) 393, 1007
Bsa29I ATCGAT 1 cut(s) 997
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 259, 265, 1006
BsaWI WCCGGW 4 cut(s) 233, 322, 471, 559
Bse1I ACTGG 3 cut(s) 144, 544, 934
Bse3DI GCAATG 3 cut(s) 489, 730, 1015
BseAI TCCGGA 3 cut(s) 233, 322, 559
BseBI CCWGG 2 cut(s) 284, 697
BseCI ATCGAT 1 cut(s) 997
BseDI CCNNGG 3 cut(s) 259, 265, 1006
BseGI GGATG 2 cut(s) 279, 691
BseMI GCAATG 3 cut(s) 489, 730, 1015
BseMII CTCAG 1 cut(s) 966
BseNI ACTGG 3 cut(s) 144, 544, 934
BseRI GAGGAG 1 cut(s) 1051
BseXI GCAGC 3 cut(s) 112, 134, 375
BsgI GTGCAG 2 cut(s) 14, 970
Bsh1236I CGCG 3 cut(s) 136, 153, 386
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 5 cut(s) 200, 264, 759, 801, 1014
BshNI GGYRCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 997
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 2 cut(s) 449, 500
BsiSI CCGG 6 cut(s) 234, 323, 392, 472, 560, 1006
BslFI GGGAC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 5 cut(s) 200, 264, 759, 801, 1014
BsoBI CYCGRG 2 cut(s) 449, 500
Bsp1286I GDGCHC 2 cut(s) 450, 501
Bsp13I TCCGGA 3 cut(s) 233, 322, 559
Bsp143I GATC 5 cut(s) 346, 378, 652, 994, 998
Bsp1720I GCTNAGC 1 cut(s) 975
BspANI GGCC 5 cut(s) 200, 264, 759, 801, 1014
BspCNI CTCAG 1 cut(s) 967
BspDI ATCGAT 1 cut(s) 997
BspEI TCCGGA 3 cut(s) 233, 322, 559
BspFNI CGCG 3 cut(s) 136, 153, 386
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 6 cut(s) 7, 309, 367, 603, 802, 1013
BspT107I GGYRCC 1 cut(s) 365
BspTI CTTAAG 1 cut(s) 611
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 3 cut(s) 489, 730, 1015
BsrI ACTGG 3 cut(s) 144, 544, 934
BssECI CCNNGG 3 cut(s) 259, 265, 1006
BssMI GATC 5 cut(s) 346, 378, 652, 994, 998
BssNI GRCGYC 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 284, 697
Bst4CI ACNGT 1 cut(s) 991
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 917
BstC8I GCNNGC 5 cut(s) 138, 330, 446, 642, 922
BstDEI CTNAG 1 cut(s) 975
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 279, 691
BstFNI CGCG 3 cut(s) 136, 153, 386
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 2 cut(s) 368, 388
BstKTI GATC 5 cut(s) 349, 381, 655, 997, 1001
BstMBI GATC 5 cut(s) 346, 378, 652, 994, 998
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 5 cut(s) 14, 206, 402, 517, 917
BstNI CCWGG 2 cut(s) 284, 697
BstSCI CCNGG 4 cut(s) 282, 391, 695, 1005
BstSFI CTRYAG 1 cut(s) 942
BstUI CGCG 3 cut(s) 136, 153, 386
BstV1I GCAGC 3 cut(s) 112, 134, 375
BstV2I GAAGAC 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 997
BsuRI GGCC 5 cut(s) 200, 264, 759, 801, 1014
BsuTUI ATCGAT 1 cut(s) 997
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 2 cut(s) 279, 691
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 26, 405
Cac8I GCNNGC 5 cut(s) 138, 330, 446, 642, 922
CciI TCATGA 1 cut(s) 817
CfoI GCGC 2 cut(s) 368, 388
Cfr13I GGNCC 2 cut(s) 800, 1012
ClaI ATCGAT 1 cut(s) 997
Csp6I GTAC 4 cut(s) 256, 533, 626, 747
CviAII CATG 5 cut(s) 119, 168, 175, 818, 1056
CviQI GTAC 4 cut(s) 256, 533, 626, 747
DdeI CTNAG 1 cut(s) 975
DinI GGCGCC 1 cut(s) 367
DpnI GATC 5 cut(s) 348, 380, 654, 996, 1000
DpnII GATC 5 cut(s) 346, 378, 652, 994, 998
DraI TTTAAA 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 499
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 450, 501
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 603
Eco88I CYCGRG 2 cut(s) 449, 500
EcoICRI GAGCTC 1 cut(s) 499
EcoRII CCWGG 2 cut(s) 282, 695
EcoT38I GRGCYC 2 cut(s) 450, 501
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
FaeI CATG 5 cut(s) 122, 171, 178, 821, 1059
FaqI GGGAC 1 cut(s) 528
FatI CATG 5 cut(s) 118, 167, 174, 817, 1055
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 8 cut(s) 15, 52, 123, 126, 134, 333, 389, 954
FokI GGATG 2 cut(s) 266, 698
FriOI GRGCYC 2 cut(s) 450, 501
Fsp4HI GCNGC 8 cut(s) 15, 52, 123, 126, 134, 333, 389, 954
GlaI GCGC 2 cut(s) 367, 387
GluI GCNGC 8 cut(s) 15, 52, 123, 126, 134, 333, 389, 954
GsuI CTGGAG 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 5 cut(s) 200, 264, 759, 801, 1014
HapII CCGG 6 cut(s) 234, 323, 392, 472, 560, 1006
HhaI GCGC 2 cut(s) 368, 388
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 5 cut(s) 122, 171, 178, 821, 1059
Hin6I GCGC 2 cut(s) 366, 386
HinP1I GCGC 2 cut(s) 366, 386
HinfI GANTC 8 cut(s) 97, 185, 230, 237, 299, 468, 486, 814
HpaII CCGG 6 cut(s) 234, 323, 392, 472, 560, 1006
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 6 cut(s) 96, 307, 351, 436, 622, 678
Hpy188III TCNNGA 9 cut(s) 193, 218, 234, 323, 502, 560, 569, 818, 962
Hpy99I CGWCG 3 cut(s) 194, 374, 665
HpyAV CCTTC 6 cut(s) 96, 190, 220, 574, 746, 763
HpyCH4III ACNGT 1 cut(s) 991
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 8 cut(s) 31, 122, 511, 644, 735, 856, 987, 1020
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 206, 402, 517, 917
HpyF3I CTNAG 1 cut(s) 975
HpySE526I ACGT 1 cut(s) 624
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 5 cut(s) 122, 171, 178, 821, 1059
HspAI GCGC 2 cut(s) 366, 386
KasI GGCGCC 1 cut(s) 365
Kpn2I TCCGGA 3 cut(s) 233, 322, 559
Kzo9I GATC 5 cut(s) 346, 378, 652, 994, 998
LmnI GCTCC 8 cut(s) 5, 59, 307, 325, 895, 902, 908, 932
Lsp1109I GCAGC 3 cut(s) 112, 134, 375
LweI GCATC 2 cut(s) 405, 873
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 691, 703
MalI GATC 5 cut(s) 348, 380, 654, 996, 1000
MbiI CCGCTC 1 cut(s) 54
MboI GATC 5 cut(s) 346, 378, 652, 994, 998
MboII GAAGA 7 cut(s) 58, 71, 81, 140, 294, 373, 584
MhlI GDGCHC 2 cut(s) 450, 501
MluCI AATT 9 cut(s) 430, 505, 552, 564, 606, 763, 779, 795, 848
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 1 cut(s) 477
MroI TCCGGA 3 cut(s) 233, 322, 559
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 4 cut(s) 528, 585, 612, 666
MslI CAYNNNNRTG 3 cut(s) 179, 540, 1054
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 6 cut(s) 234, 323, 392, 472, 560, 1006
MspR9I CCNGG 4 cut(s) 284, 393, 697, 1007
MvaI CCWGG 2 cut(s) 284, 697
MvnI CGCG 3 cut(s) 136, 153, 386
MwoI GCNNNNNNNGC 5 cut(s) 14, 206, 402, 517, 917
NarI GGCGCC 1 cut(s) 366
NciI CCSGG 2 cut(s) 393, 1007
NdeII GATC 5 cut(s) 346, 378, 652, 994, 998
NlaIII CATG 5 cut(s) 122, 171, 178, 821, 1059
NlaIV GGNNCC 6 cut(s) 7, 309, 367, 603, 802, 1013
NmeAIII GCCGAG 2 cut(s) 246, 520
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 817
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 7 cut(s) 97, 185, 230, 237, 299, 486, 814
PkrI GCNGC 8 cut(s) 16, 53, 124, 127, 135, 334, 390, 955
PleI GAGTC 1 cut(s) 476
PluTI GGCGCC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 282, 695
PspGI CCWGG 2 cut(s) 282, 695
PspN4I GGNNCC 6 cut(s) 7, 309, 367, 603, 802, 1013
PspPI GGNCC 2 cut(s) 800, 1012
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 4 cut(s) 257, 534, 627, 748
RsaNI GTAC 4 cut(s) 256, 533, 626, 747
RseI CAYNNNNRTG 3 cut(s) 179, 540, 1054
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 4 cut(s) 528, 585, 612, 666
SatI GCNGC 8 cut(s) 15, 52, 123, 126, 134, 333, 389, 954
Sau3AI GATC 5 cut(s) 346, 378, 652, 994, 998
Sau96I GGNCC 2 cut(s) 800, 1012
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 4 cut(s) 284, 393, 697, 1007
SduI GDGCHC 2 cut(s) 450, 501
SfaNI GCATC 2 cut(s) 405, 873
SfcI CTRYAG 1 cut(s) 942
SfoI GGCGCC 1 cut(s) 367
Sfr274I CTCGAG 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 3 cut(s) 179, 540, 1054
SmlI CTYRAG 3 cut(s) 500, 611, 962
SmoI CTYRAG 3 cut(s) 500, 611, 962
Sse9I AATT 9 cut(s) 430, 505, 552, 564, 606, 763, 779, 795, 848
SseBI AGGCCT 1 cut(s) 200
SspDI GGCGCC 1 cut(s) 365
SstI GAGCTC 1 cut(s) 501
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 4 cut(s) 282, 391, 695, 1005
TaaI ACNGT 1 cut(s) 991
TaiI ACGT 1 cut(s) 627
TaqI TCGA 5 cut(s) 82, 192, 219, 501, 997
TasI AATT 9 cut(s) 430, 505, 552, 564, 606, 763, 779, 795, 848
TatI WGTACW 1 cut(s) 532
TauI GCSGC 5 cut(s) 17, 54, 136, 335, 956
TfiI GAWTC 7 cut(s) 97, 185, 230, 237, 299, 486, 814
Tru1I TTAA 4 cut(s) 528, 585, 612, 666
Tru9I TTAA 4 cut(s) 528, 585, 612, 666
TscAI CASTG 2 cut(s) 33, 412
TseI GCWGC 3 cut(s) 122, 125, 388
TspDTI ATGAA 3 cut(s) 268, 478, 792
TspGWI ACGGA 3 cut(s) 178, 387, 649
TspRI CASTG 2 cut(s) 33, 412
Vha464I CTTAAG 1 cut(s) 611
XapI RAATTY 4 cut(s) 505, 564, 763, 848
XhoI CTCGAG 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.