Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009534

Physical Location & Seq

Genomic Coordinates Forward (+)

8703382 .. 8705043

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1084600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCGTGGAAGCCGTCGAGAAGGCCTCCCCCGCCTCCTTTCTCGACCGCAGAGAAGCCGGATTCCTCCACTTCGTCAAGTACCACGGCCTCGGCAACGACTTCATCCTGGTTGATAACAGAGATTCTTCGGAACCTAAAATCAGTCCGGAGCAGGCGGCGAAGCTGTGTGATCGGAACTTTGGGATTGGCGCCGACGGAGTGATCTTCGCTCTGCCGGGCATCAACGGCACTGATTATACAATGAGGATTTACAATTCTGATGGGAGCGAGCCCGAGATGTGTGGTAATGGAGTCCGGTGTTTTGCCAGATTCATTGCCGAGCTCGAGAATTTGCAGGGACGGCATAGCTTTAAGGTGCATACTGGTGCTGGTCTAATTATTCCGGAAATTCAAGAAGATGGGAAGGTTAAAGTTGATATGGGGGAACCAATTCTTAAGGCTTCAGACGTACCTACAAGACTGCCTGCAAACAAGATCAATCTGTTGTTAAGTCGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008837 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009089 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016854 GO:0016855 GO:0019752 GO:0036361 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0047661 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DAP_epimerase

Protein Analysis

168

Amino Acids

18.26

Weight (kDa)

5.57

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAP_epimerase	PF01678	25 - 145	1.1e-34	Diaminopimelate epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53580
fragaria_vesca	FvH4_6g14490
malus_domestica	MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1
prunus_persica	Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1
pyrus_communis	pycom04g10870 pycom07g06870 pycom12g13120
rosa_chinensis	RchiOBHm_Chr3g0467571
rosa_laevigata	RLG00000024489
rosa_multiflora	Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016
rosa_roxburghii	Rroxscaffold_6G00413580
rosa_rugosa	Rorug03G0088200
rosa_samantha	Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700
rosa_wichuraiana	Rw3G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccIII	TCCGGA	2 cut(s)	148, 385
AciI	CCGC	3 cut(s)	33, 49, 158
AcsI	RAATTY	2 cut(s)	331, 390
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	83, 453
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	166, 325, 351
AluI	AGCT	3 cut(s)	166, 325, 351
Alw21I	GWGCWC	1 cut(s)	327
Ama87I	CYCGRG	2 cut(s)	275, 326
Aor13HI	TCCGGA	2 cut(s)	148, 385
AoxI	GGCC	2 cut(s)	24, 88
ApoI	RAATTY	2 cut(s)	331, 390
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	219
AvaI	CYCGRG	2 cut(s)	275, 326
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	276, 327
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	2 cut(s)	257, 395
BceAI	ACGGC	3 cut(s)	103, 244, 359
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	2 cut(s)	110, 219
BmeT110I	CYCGRG	2 cut(s)	275, 326
BmiI	GGNNCC	3 cut(s)	135, 193, 429
BmrFI	CCNGG	2 cut(s)	110, 219
BmsI	GCATC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	85, 91
BsaWI	WCCGGW	3 cut(s)	148, 297, 385
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	2 cut(s)	148, 385
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	85, 91
BseGI	GGATG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	26, 90
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	327
BsiHKCI	CYCGRG	2 cut(s)	275, 326
BsiSI	CCGG	5 cut(s)	60, 149, 218, 298, 386
BslFI	GGGAC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	26, 90
BsoBI	CYCGRG	2 cut(s)	275, 326
Bsp1286I	GDGCHC	2 cut(s)	276, 327
Bsp13I	TCCGGA	2 cut(s)	148, 385
Bsp143I	GATC	3 cut(s)	172, 204, 477
BspACI	CCGC	3 cut(s)	33, 49, 158
BspANI	GGCC	2 cut(s)	26, 90
BspEI	TCCGGA	2 cut(s)	148, 385
BspLI	GGNNCC	3 cut(s)	135, 193, 429
BspT107I	GGYRCC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	85, 91
BssMI	GATC	3 cut(s)	172, 204, 477
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	156, 272, 468
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	175, 207, 480
BstMBI	GATC	3 cut(s)	172, 204, 477
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 228, 343
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 217
BsuRI	GGCC	2 cut(s)	26, 90
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	156, 272, 468
CfoI	GCGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	82, 452
CviJI	RGCY	9 cut(s)	14, 26, 59, 90, 166, 274, 325, 351, 443
CviKI_1	RGCY	9 cut(s)	14, 26, 59, 90, 166, 274, 325, 351, 443
CviQI	GTAC	2 cut(s)	82, 452
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	174, 206, 479
DpnII	GATC	3 cut(s)	172, 204, 477
Ecl136II	GAGCTC	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	276, 327
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	275, 326
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	276, 327
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaiI	YATR	4 cut(s)	240, 348, 363, 422
FaqI	GGGAC	1 cut(s)	354
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	276, 327
Fsp4HI	GCNGC	1 cut(s)	159
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	26, 90
HapII	CCGG	5 cut(s)	60, 149, 218, 298, 386
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	4 cut(s)	63, 125, 294, 312
HpaII	CCGG	5 cut(s)	60, 149, 218, 298, 386
Hpy188I	TCNGA	5 cut(s)	133, 177, 262, 448, 503
Hpy188III	TCNNGA	6 cut(s)	19, 44, 149, 328, 386, 395
Hpy99I	CGWCG	2 cut(s)	20, 200
HpyAV	CCTTC	2 cut(s)	16, 400
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	337, 361, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 228, 343
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	192
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
Kpn2I	TCCGGA	2 cut(s)	148, 385
Kzo9I	GATC	3 cut(s)	172, 204, 477
LmnI	GCTCC	2 cut(s)	151, 267
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	1 cut(s)	450
MalI	GATC	3 cut(s)	174, 206, 479
MboI	GATC	3 cut(s)	172, 204, 477
MboII	GAAGA	3 cut(s)	120, 199, 410
MhlI	GDGCHC	2 cut(s)	276, 327
MluCI	AATT	5 cut(s)	256, 331, 378, 390, 432
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	37, 46, 77, 101, 240
MroI	TCCGGA	2 cut(s)	148, 385
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	4 cut(s)	354, 411, 438, 491
MslI	CAYNNNNRTG	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	5 cut(s)	60, 149, 218, 298, 386
MspR9I	CCNGG	2 cut(s)	110, 219
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	32, 228, 343
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	172, 204, 477
NlaIV	GGNNCC	3 cut(s)	135, 193, 429
NmeAIII	GCCGAG	2 cut(s)	72, 346
PaeR7I	CTCGAG	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	63, 125, 312
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	302
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	135, 193, 429
RsaI	GTAC	2 cut(s)	83, 453
RsaNI	GTAC	2 cut(s)	82, 452
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	354, 411, 438, 491
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	172, 204, 477
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	110, 219
SduI	GDGCHC	2 cut(s)	276, 327
SetI	ASST	8 cut(s)	139, 168, 327, 353, 360, 411, 453, 457
SfaNI	GCATC	1 cut(s)	231
SfoI	GGCGCC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	326, 437
SmoI	CTYRAG	2 cut(s)	326, 437
Sse9I	AATT	5 cut(s)	256, 331, 378, 390, 432
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	3 cut(s)	33, 49, 158
SspDI	GGCGCC	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	108, 217
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	18, 45, 327
TasI	AATT	5 cut(s)	256, 331, 378, 390, 432
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	63, 125, 312
Tru1I	TTAA	4 cut(s)	354, 411, 438, 491
Tru9I	TTAA	4 cut(s)	354, 411, 438, 491
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	94, 304
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	437
XapI	RAATTY	2 cut(s)	331, 390
XhoI	CTCGAG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.