Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009534

Physical Location & Seq

Genomic Coordinates Forward (+)

24477350 .. 24481201

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G249100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCCATAGCCGCCGCCATCTCACTGCCTCTAACGTCCCCAGCTCGCCGCTCTCTCGCCTCCTTCACCTCTCTTCGATCTTCTTCTCCAATTCTGAAACTCAACTCTGTGAGGGGAAGTGTCTCTTTGAGAACTGCTTGTCTTCGCGTCTCGGCGGCCTCGTCTTCGATGAGCGTCGAAGCCGTCGAGAAAGCCTCGCCGGCTTCTTTTCTGGACCGGAGAGAGACCGGGTTCCTTCACTTCGTCAAGTACCACGGCCTCGGCAACGACTTCATTTTGGTTGATAATAGGGATTCTTCGGAGCCTAAGATCACTCCAGAGCAAGCAGCGAAGCTCTGTGATCGGAACTTCGGGATTGGCGCTGACGGAGTGATCTTCGCGCTGCCGGGCATCAATGGCACCGATTATACCATGAGGATTTACAATTCTGATGGGAGCGAGCCCGAGATGTGTGGTAATGGAGTCCGATGCTTTGCCAGATTCATTGCGGAGCTTGAGAATTTGCACGGGAAGCAACGCTTTACGGTGCATACCGGTGCTGGTCTAATTGTTCCAGAAATTCAAGATGATGGGAAGGTTAAAGTTGATATGGGGGAACCAATTCTAAAAGCAACAGATGTACCTACAGGACTACCTGCAAACAAGAATCAATCTGTTGTTAAGTCGGATCTTGATGTAGATGGAGTAACCTGGAATGTAACATGTGTTAGCATGGGAAATCCTCATTGTGTAACTTTTGGTACAAAAGGAGGCCAGAATTTGCAGGTCGATGAATTGAAGTTGGCTGAAATTGGTCCAAAATTTGAAAACCATGTGGTGTTTCCTGCACGAACTAACACAGAATTTGTACAAGTTTTCACTCCTTCACACCTCAAGATGCGTGTTTGGGAGCGTGGTGCAGGAGCAACACTGGCTTGCGGAACTGGTGCTTGTGCTGTAGTTGTTGCAGCAGTTCTTGAGGGTCGAGCTGAGCGGAATTGCACGGTCGATTTACCAGGAGGGCCATTGCAGATTGAGTGGAGAGAGGAGGACAACCATATATACATGACAGGCCCGGCTGAAGTAGTTTTTTATGGATCTGTGCCCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008837 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009089 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016854 GO:0016855 GO:0019752 GO:0036361 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0047661 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DAP_epimerase

Protein Analysis

364

Amino Acids

38.98

Weight (kDa)

5.94

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53580
fragaria_vesca	FvH4_6g14490
malus_domestica	MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1
prunus_persica	Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1
pyrus_communis	pycom04g10870 pycom07g06870 pycom12g13120
rosa_chinensis	RchiOBHm_Chr3g0467571
rosa_laevigata	RLG00000024489
rosa_multiflora	Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016
rosa_roxburghii	Rroxscaffold_6G00413580
rosa_rugosa	Rorug03G0088200
rosa_samantha	Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700
rosa_wichuraiana	Rw3G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	643, 754
AccB1I	GGYRCC	1 cut(s)	398
AccBSI	CCGCTC	2 cut(s)	51, 973
AccII	CGCG	2 cut(s)	147, 380
AciI	CCGC	7 cut(s)	12, 15, 49, 155, 488, 918, 973
AclWI	GGATC	2 cut(s)	675, 1084
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	499, 558, 757, 800, 842
AcuI	CTGAAG	1 cut(s)	1080
AfaI	GTAC	4 cut(s)	251, 621, 742, 849
AflIII	ACRYGT	1 cut(s)	701
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	563, 778, 806
AjnI	CCWGG	2 cut(s)	689, 994
AluBI	AGCT	4 cut(s)	44, 334, 493, 968
AluI	AGCT	4 cut(s)	44, 334, 493, 968
Alw26I	GTCTC	3 cut(s)	127, 154, 218
AlwI	GGATC	2 cut(s)	675, 1084
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	6 cut(s)	3, 156, 256, 751, 1001, 1051
ApeKI	GCWGC	3 cut(s)	326, 382, 947
ApoI	RAATTY	5 cut(s)	499, 558, 757, 800, 842
AsiGI	ACCGGT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	362, 382
AspS9I	GGNCC	4 cut(s)	214, 794, 1001, 1052
AsuC2I	CCSGG	3 cut(s)	229, 387, 1055
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	214, 794
BaeGI	GKGCMC	1 cut(s)	1086
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	2 cut(s)	134, 156
BbvI	GCAGC	3 cut(s)	338, 369, 959
BccI	CCATC	4 cut(s)	26, 425, 563, 674
BceAI	ACGGC	2 cut(s)	167, 271
BciT130I	CCWGG	2 cut(s)	691, 996
BcnI	CCSGG	3 cut(s)	229, 387, 1055
BcoDI	GTCTC	3 cut(s)	127, 154, 218
BfmI	CTRYAG	2 cut(s)	624, 936
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	643, 754
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	7 cut(s)	12, 15, 49, 156, 327, 383, 948
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	7 cut(s)	13, 16, 50, 157, 328, 384, 949
Bme1390I	CCNGG	5 cut(s)	229, 387, 691, 996, 1055
Bme18I	GGWCC	2 cut(s)	214, 794
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	4 cut(s)	214, 794, 1001, 1052
BmiI	GGNNCC	4 cut(s)	233, 303, 400, 597
BmrFI	CCNGG	5 cut(s)	229, 387, 691, 996, 1055
BmsI	GCATC	3 cut(s)	399, 458, 867
BpiI	GAAGAC	2 cut(s)	134, 156
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuEI	CTTGAG	3 cut(s)	515, 857, 977
BpuMI	CCSGG	3 cut(s)	229, 387, 1055
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	253, 259
BsaWI	WCCGGW	2 cut(s)	216, 533
Bse118I	RCCGGY	2 cut(s)	199, 533
Bse1I	ACTGG	2 cut(s)	915, 928
Bse3DI	GCAATG	2 cut(s)	483, 1004
BseBI	CCWGG	2 cut(s)	691, 996
BseDI	CCNNGG	2 cut(s)	253, 259
BseMI	GCAATG	2 cut(s)	483, 1004
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	2 cut(s)	915, 928
BseRI	GAGGAG	1 cut(s)	1040
BseSI	GKGCMC	1 cut(s)	1086
BseXI	GCAGC	3 cut(s)	338, 369, 959
BseYI	CCCAGC	1 cut(s)	40
BsgI	GTGCAG	2 cut(s)	810, 918
Bsh1236I	CGCG	2 cut(s)	147, 380
Bsh1285I	CGRYCG	1 cut(s)	987
BshFI	GGCC	6 cut(s)	5, 158, 258, 753, 1003, 1053
BshNI	GGYRCC	1 cut(s)	398
BshTI	ACCGGT	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	987
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	6 cut(s)	200, 217, 228, 386, 534, 1055
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	127, 154, 218
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	6 cut(s)	5, 158, 258, 753, 1003, 1053
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	444, 1086
Bsp1407I	TGTACA	1 cut(s)	847
Bsp143I	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
Bsp1720I	GCTNAGC	1 cut(s)	969
BspACI	CCGC	7 cut(s)	12, 15, 49, 155, 488, 918, 973
BspANI	GGCC	6 cut(s)	5, 158, 258, 753, 1003, 1053
BspCNI	CTCAG	1 cut(s)	961
BspFNI	CGCG	2 cut(s)	147, 380
BspLI	GGNNCC	4 cut(s)	233, 303, 400, 597
BspMI	ACCTGC	2 cut(s)	643, 754
BspPI	GGATC	2 cut(s)	675, 1084
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	2 cut(s)	51, 973
BsrDI	GCAATG	2 cut(s)	483, 1004
BsrFI	RCCGGY	2 cut(s)	199, 533
BsrGI	TGTACA	1 cut(s)	847
BsrI	ACTGG	2 cut(s)	915, 928
BssAI	RCCGGY	2 cut(s)	199, 533
BssECI	CCNNGG	2 cut(s)	253, 259
BssMI	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
Bst2UI	CCWGG	2 cut(s)	691, 996
Bst4CI	ACNGT	2 cut(s)	526, 985
Bst6I	CTCTTC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	847
BstC8I	GCNNGC	5 cut(s)	46, 201, 324, 440, 916
BstDEI	CTNAG	2 cut(s)	306, 969
BstDSI	CCRYGG	1 cut(s)	253
BstFNI	CGCG	2 cut(s)	147, 380
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	362, 382
BstKTI	GATC	6 cut(s)	80, 312, 343, 375, 670, 1079
BstMAI	GTCTC	3 cut(s)	127, 154, 218
BstMBI	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
BstMCI	CGRYCG	1 cut(s)	987
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 200, 396, 511, 911
BstNI	CCWGG	2 cut(s)	691, 996
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	5 cut(s)	227, 385, 689, 994, 1053
BstSFI	CTRYAG	2 cut(s)	624, 936
BstSLI	GKGCMC	1 cut(s)	1086
BstUI	CGCG	2 cut(s)	147, 380
BstV1I	GCAGC	3 cut(s)	338, 369, 959
BstV2I	GAAGAC	2 cut(s)	134, 156
BstX2I	RGATCY	2 cut(s)	667, 1076
BstYI	RGATCY	2 cut(s)	667, 1076
BsuRI	GGCC	6 cut(s)	5, 158, 258, 753, 1003, 1053
BtgI	CCRYGG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 908
BveI	ACCTGC	2 cut(s)	643, 754
Cac8I	GCNNGC	5 cut(s)	46, 201, 324, 440, 916
CfoI	GCGC	2 cut(s)	362, 382
Cfr10I	RCCGGY	2 cut(s)	199, 533
Cfr13I	GGNCC	4 cut(s)	214, 794, 1001, 1052
CseI	GACGC	2 cut(s)	136, 163
Csp6I	GTAC	4 cut(s)	250, 620, 741, 848
CspAI	ACCGGT	1 cut(s)	533
CviAII	CATG	5 cut(s)	412, 702, 712, 812, 1045
CviQI	GTAC	4 cut(s)	250, 620, 741, 848
DdeI	CTNAG	2 cut(s)	306, 969
DpnI	GATC	6 cut(s)	79, 311, 342, 374, 669, 1078
DpnII	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	444
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	214, 794
Eco57I	CTGAAG	1 cut(s)	1080
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	689, 994
EcoT38I	GRGCYC	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	5 cut(s)	415, 705, 715, 815, 1048
FalI	AAGNNNNNCTT	4 cut(s)	109, 141, 503, 535
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	5 cut(s)	411, 701, 711, 811, 1044
Fnu4HI	GCNGC	7 cut(s)	12, 15, 49, 156, 327, 383, 948
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	7 cut(s)	12, 15, 49, 156, 327, 383, 948
GlaI	GCGC	2 cut(s)	361, 381
GluI	GCNGC	7 cut(s)	12, 15, 49, 156, 327, 383, 948
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	6 cut(s)	5, 158, 258, 753, 1003, 1053
HapII	CCGG	6 cut(s)	200, 217, 228, 386, 534, 1055
HgaI	GACGC	2 cut(s)	136, 163
HhaI	GCGC	2 cut(s)	362, 382
Hin1II	CATG	5 cut(s)	415, 705, 715, 815, 1048
Hin6I	GCGC	2 cut(s)	360, 380
HinP1I	GCGC	2 cut(s)	360, 380
HinfI	GANTC	4 cut(s)	293, 462, 480, 646
HpaII	CCGG	6 cut(s)	200, 217, 228, 386, 534, 1055
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	6 cut(s)	96, 301, 345, 430, 467, 667
Hpy188III	TCNNGA	9 cut(s)	187, 212, 317, 352, 554, 563, 671, 874, 956
Hpy99I	CGWCG	2 cut(s)	179, 188
HpyAV	CCTTC	4 cut(s)	73, 245, 568, 873
HpyCH4III	ACNGT	2 cut(s)	526, 985
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	9 cut(s)	505, 529, 638, 763, 827, 899, 947, 981, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 200, 396, 511, 911
HpyF3I	CTNAG	2 cut(s)	306, 969
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	415, 705, 715, 815, 1048
HspAI	GCGC	2 cut(s)	360, 380
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
LmnI	GCTCC	5 cut(s)	301, 435, 490, 889, 902
Lsp1109I	GCAGC	3 cut(s)	338, 369, 959
LweI	GCATC	3 cut(s)	399, 458, 867
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	685, 697, 730
MalI	GATC	6 cut(s)	79, 311, 342, 374, 669, 1078
MbiI	CCGCTC	2 cut(s)	51, 973
MboI	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
MboII	GAAGA	7 cut(s)	65, 72, 75, 134, 156, 288, 367
MflI	RGATCY	2 cut(s)	667, 1076
MhlI	GDGCHC	2 cut(s)	444, 1086
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	645
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	579, 660
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	200, 217, 228, 386, 534, 1055
MspR9I	CCNGG	5 cut(s)	229, 387, 691, 996, 1055
MvaI	CCWGG	2 cut(s)	691, 996
MvnI	CGCG	2 cut(s)	147, 380
MwoI	GCNNNNNNNGC	5 cut(s)	11, 200, 396, 511, 911
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	3 cut(s)	229, 387, 1055
NdeII	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	415, 705, 715, 815, 1048
NlaIV	GGNNCC	4 cut(s)	233, 303, 400, 597
NmeAIII	GCCGAG	2 cut(s)	131, 240
NspI	RCATGY	1 cut(s)	705
PciI	ACATGT	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 183
PdiI	GCCGGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	293, 480, 646
PinAI	ACCGGT	1 cut(s)	533
PkrI	GCNGC	7 cut(s)	13, 16, 50, 157, 328, 384, 949
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PscI	ACATGT	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	689, 994
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	2 cut(s)	689, 994
PspN4I	GGNNCC	4 cut(s)	233, 303, 400, 597
PspPI	GGNCC	4 cut(s)	214, 794, 1001, 1052
PsuI	RGATCY	2 cut(s)	667, 1076
RsaI	GTAC	4 cut(s)	251, 621, 742, 849
RsaNI	GTAC	4 cut(s)	250, 620, 741, 848
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	579, 660
SatI	GCNGC	7 cut(s)	12, 15, 49, 156, 327, 383, 948
Sau3AI	GATC	6 cut(s)	77, 309, 340, 372, 667, 1076
Sau96I	GGNCC	4 cut(s)	214, 794, 1001, 1052
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	5 cut(s)	229, 387, 691, 996, 1055
SduI	GDGCHC	2 cut(s)	444, 1086
SfaNI	GCATC	3 cut(s)	399, 458, 867
SfcI	CTRYAG	2 cut(s)	624, 936
SinI	GGWCC	2 cut(s)	214, 794
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	494, 872, 956
SmoI	CTYRAG	3 cut(s)	494, 872, 956
SsiI	CCGC	7 cut(s)	12, 15, 49, 155, 488, 918, 973
StyD4I	CCNGG	5 cut(s)	227, 385, 689, 994, 1053
TaaI	ACNGT	2 cut(s)	526, 985
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	7 cut(s)	76, 167, 177, 186, 768, 964, 987
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	4 cut(s)	14, 17, 51, 158
TfiI	GAWTC	3 cut(s)	293, 480, 646
Tru1I	TTAA	2 cut(s)	579, 660
Tru9I	TTAA	2 cut(s)	579, 660
TscAI	CASTG	2 cut(s)	30, 915
TseI	GCWGC	3 cut(s)	326, 382, 947
TspDTI	ATGAA	3 cut(s)	262, 472, 786
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	30, 915
VpaK11BI	GGWCC	2 cut(s)	214, 794
XapI	RAATTY	5 cut(s)	499, 558, 757, 800, 842
XceI	RCATGY	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.