Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009534

Physical Location & Seq

Genomic Coordinates Forward (+)

8885683 .. 8896903

Gene Structure 11221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1085800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGAAATCCTCATTGCATAACTTTTGGCACAGAAGGAGGCCAGAATTTGAAGGTTGATGAATTGAAGTTGGCTGAAATTGGTCCCAAGTTTGAGAATCATGAGGTGTTTCCAGCACGAACTAACACAGAATTTGTGCAAGTTTTCACTCATTCGCACCTAAAGATGCGTGTTTGGGAGCGTGGGGCGGGAGCAACACTTGCTTGCGGAACTGGAGCTTGTGCTGTAGTGGTTGCCACAGTTCTTGAAGGTCGTGCTGAGCGAAACTGCACGGTTGATCTACCGGGAGGGCCGTTGCAGATTGAGTGGAGAGAGGAGAACAATCACATCTACATGACAGGCCCAGCTGAAGTCGTATTTTACGGATCAGTGCCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008837 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009089 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016854 GO:0016855 GO:0019752 GO:0036361 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0047661 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DAP_epimerase

Protein Analysis

127

Amino Acids

13.77

Weight (kDa)

5.47

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAP_epimerase	PF01678	1 - 118	1.2e-31	Diaminopimelate epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53580
fragaria_vesca	FvH4_6g14490
malus_domestica	MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1
prunus_persica	Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1
pyrus_communis	pycom04g10870 pycom07g06870 pycom12g13120
rosa_chinensis	RchiOBHm_Chr3g0467571
rosa_laevigata	RLG00000024489
rosa_multiflora	Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016
rosa_roxburghii	Rroxscaffold_6G00413580
rosa_rugosa	Rorug03G0088200
rosa_samantha	Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700
rosa_wichuraiana	Rw3G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	188, 207
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	46, 131
AcuI	CTGAAG	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	52, 67, 248
AluBI	AGCT	2 cut(s)	218, 347
AluI	AGCT	2 cut(s)	218, 347
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	3 cut(s)	40, 290, 340
ApoI	RAATTY	2 cut(s)	46, 131
AspS9I	GGNCC	3 cut(s)	83, 290, 341
AsuC2I	CCSGG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	3 cut(s)	83, 290, 341
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	42, 292, 342
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	42, 292, 342
Bsp143I	GATC	2 cut(s)	277, 365
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	2 cut(s)	188, 207
BspANI	GGCC	3 cut(s)	42, 292, 342
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	277, 365
Bst4CI	ACNGT	2 cut(s)	241, 274
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	280, 368
BstMBI	GATC	2 cut(s)	277, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	42, 292, 342
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	205
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	83, 290, 341
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	2 cut(s)	101, 334
CviJI	RGCY	6 cut(s)	42, 74, 218, 292, 342, 347
CviKI_1	RGCY	6 cut(s)	42, 74, 218, 292, 342, 347
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	279, 367
DpnII	GATC	2 cut(s)	277, 365
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	369
FaeI	CATG	2 cut(s)	104, 337
FaiI	YATR	4 cut(s)	20, 102, 335, 379
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	100, 333
FauI	CCCGC	1 cut(s)	181
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	42, 292, 342
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	2 cut(s)	104, 337
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	284
Hpy188III	TCNNGA	2 cut(s)	101, 245
HpyAV	CCTTC	3 cut(s)	29, 46, 242
HpyCH4III	ACNGT	2 cut(s)	241, 274
HpyCH4V	TGCA	4 cut(s)	18, 139, 270, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	104, 337
Kzo9I	GATC	2 cut(s)	277, 365
LmnI	GCTCC	3 cut(s)	178, 191, 215
LpnPI	CCDG	6 cut(s)	56, 126, 198, 297, 324, 357
LweI	GCATC	1 cut(s)	156
MalI	GATC	2 cut(s)	279, 367
MboI	GATC	2 cut(s)	277, 365
MluCI	AATT	4 cut(s)	46, 62, 78, 131
MnlI	CCTC	5 cut(s)	21, 32, 97, 281, 307
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	277, 365
NlaIII	CATG	2 cut(s)	104, 337
NlaIV	GGNNCC	1 cut(s)	85
PagI	TCATGA	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	3 cut(s)	83, 290, 341
PvuII	CAGCTG	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	332
Sau3AI	GATC	2 cut(s)	277, 365
Sau96I	GGNCC	3 cut(s)	83, 290, 341
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	6 cut(s)	57, 108, 162, 220, 253, 349
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	4 cut(s)	46, 62, 78, 131
SsiI	CCGC	2 cut(s)	188, 207
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	241, 274
TasI	AATT	4 cut(s)	46, 62, 78, 131
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	46, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.