RLG00000024489

Diaminopimelate epimerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
36374929 .. 36378736
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024489

Sequence Viewer

Length: 1089 bp
ATGGCCATAGCCGCCGCCATTTCGGTGCCTCTCACATCCCCGACTCTCCGATCACTCACCTCCTTCCTTCCTCATCAATCGTCTCCTTCTCCTATTCTCCAATTCAACTCTCTCAGAAAAACCGTTAGCCCTCGTTTACGCCTCGTGGCGGCGGCGGCGTCTTCAATGAGAGTCGAAGCAGCCGAAAAGGCGTCGCCGGCTTCTTTTCTGGACAGGAGAGAGGCCGGAATCCTTCACTTTGTCAAGTACCATGGCCTCGGCAACGACTTCATCCTGGTTGATAATAGGGATTCTTCGGAGCCTAAGGTTACTCCGGAGCAAGCAGTGAAGCTATGCGATCGGAACTTCGGGATTGGCGCCGATGGAGTCATCTTCGCGCTTCCTGGCATCAATGGCACTGATTATACCATGAGGATTTTCAATTCCGATGGGAGCGAGCCGGAGATGTGTGGTAATGGAGTCCGGTGTTTTGCAAGATTCATCACAGAGCTTGAGAATCTACATGGGAACCAACGCTTTACAGTACATACTGGTGCTGGTCTAATTGTTCCAGAAATTGTGGATGATGGGAAGGTTAGAGTTGATATGGGGGAGCCAATTCTTAAAGCATCAGACGTACCCACTAAATTACCTCCAAACAAAGATCATTCTGTTGTTAAGGCAGGTTTGGATGTTGATGGAGTAACCTGGAATGTAACTTGTGTCAGTATGGGAAATCCTCATTGTATAACTTTTGGTACAGAAGGAGGCCAGAATTTGCAGGTTGATGAATTGAATTTAGCTGAAATTGGTCCAAAATTTGAGCACCATGAGGTGTTTCCAGCAAGAACTAACACAGAATTTGTTCAAGTTTTCACTCCTTCACACCTCAAAATGCGAGTCTGGGAGCGTGGTGCAGGAGCAACGTTGGCTTGTGGAACTGGTGCTTGTGCTGTAGTTGTAGCAGCAGTTCTTGAGGGTCGTGCTGCGCGGAATTGCACGGTTGATTTACCCGGAGGACCATTGCAAATCGAGTGGAGAGAGGAGGACAATCATATTTACATGACCGGCCCAGCCGAAGTAGTTTTTTACGGATCTGTTCCCCTGTAA

Protein Analysis

363

Amino Acids

39.03

Weight (kDa)

5.68

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAP_epimerase PF01678 80 - 200 2e-34 Diaminopimelate epimerase
DAP_epimerase PF01678 234 - 354 2.1e-32 Diaminopimelate epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 653, 751
AccB1I GGYRCC 2 cut(s) 25, 356
AccII CGCG 2 cut(s) 377, 970
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 6 cut(s) 12, 15, 149, 152, 155, 970
AclI AACGTT 1 cut(s) 905
AclWI GGATC 1 cut(s) 1081
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 754, 775, 797, 839
AcyI GRCGYC 3 cut(s) 158, 191, 357
AfaI GTAC 4 cut(s) 248, 525, 618, 739
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 5 cut(s) 106, 165, 421, 775, 848
AjnI CCWGG 3 cut(s) 273, 382, 686
AluBI AGCT 3 cut(s) 331, 490, 782
AluI AGCT 3 cut(s) 331, 490, 782
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 1081
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 5 cut(s) 3, 222, 253, 748, 1048
ApeKI GCWGC 3 cut(s) 179, 944, 965
ApoI RAATTY 4 cut(s) 754, 775, 797, 839
ArsI GACNNNNNNTTYG 2 cut(s) 864, 896
Asp700I GAANNNNTTC 1 cut(s) 843
AspLEI GCGC 3 cut(s) 359, 379, 970
AspS9I GGNCC 3 cut(s) 791, 998, 1049
AsuC2I CCSGG 1 cut(s) 993
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 791, 998
AxyI CCTNAGG 1 cut(s) 303
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 25, 356
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 3 cut(s) 191, 952, 956
BccI CCATC 4 cut(s) 356, 422, 560, 671
BciT130I CCWGG 3 cut(s) 275, 384, 688
BcnI CCSGG 1 cut(s) 993
BcoDI GTCTC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 1 cut(s) 360
BfuAI ACCTGC 2 cut(s) 653, 751
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 8 cut(s) 12, 15, 150, 153, 156, 180, 945, 966
BlsI GCNGC 8 cut(s) 13, 16, 151, 154, 157, 181, 946, 967
Bme1390I CCNGG 4 cut(s) 275, 384, 688, 993
Bme18I GGWCC 2 cut(s) 791, 998
BmgT120I GGNCC 3 cut(s) 791, 998, 1049
BmiI GGNNCC 5 cut(s) 27, 300, 358, 509, 594
BmrFI CCNGG 4 cut(s) 275, 384, 688, 993
BmsI GCATC 2 cut(s) 396, 617
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 512, 974
BpuMI CCSGG 1 cut(s) 993
BsaHI GRCGYC 3 cut(s) 158, 191, 357
BsaJI CCNNGG 2 cut(s) 250, 256
BsaWI WCCGGW 2 cut(s) 313, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 2 cut(s) 196, 1046
Bse1I ACTGG 2 cut(s) 535, 925
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 1001
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 3 cut(s) 275, 384, 688
BseDI CCNNGG 2 cut(s) 250, 256
BseGI GGATG 4 cut(s) 35, 270, 568, 676
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 1001
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 535, 925
BseRI GAGGAG 1 cut(s) 1037
BseXI GCAGC 3 cut(s) 191, 952, 956
BseYI CCCAGC 1 cut(s) 1051
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 2 cut(s) 377, 970
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 5 cut(s) 5, 224, 255, 750, 1050
BshNI GGYRCC 2 cut(s) 25, 356
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 7 cut(s) 197, 225, 314, 440, 463, 993, 1047
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsnI GGCC 5 cut(s) 5, 224, 255, 750, 1050
Bsp1286I GDGCHC 1 cut(s) 807
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 4 cut(s) 50, 337, 643, 1073
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 6 cut(s) 12, 15, 149, 152, 155, 970
BspANI GGCC 5 cut(s) 5, 224, 255, 750, 1050
BspCNI CTCAG 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 2 cut(s) 377, 970
BspLI GGNNCC 5 cut(s) 27, 300, 358, 509, 594
BspMI ACCTGC 2 cut(s) 653, 751
BspPI GGATC 1 cut(s) 1081
BspT107I GGYRCC 2 cut(s) 25, 356
BsrDI GCAATG 1 cut(s) 1001
BsrFI RCCGGY 2 cut(s) 196, 1046
BsrI ACTGG 2 cut(s) 535, 925
BssAI RCCGGY 2 cut(s) 196, 1046
BssECI CCNNGG 2 cut(s) 250, 256
BssMI GATC 4 cut(s) 50, 337, 643, 1073
BssNI GRCGYC 3 cut(s) 158, 191, 357
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 250
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 275, 384, 688
Bst4CI ACNGT 3 cut(s) 124, 523, 982
BstACI GRCGYC 3 cut(s) 158, 191, 357
BstC8I GCNNGC 3 cut(s) 198, 321, 437
BstDEI CTNAG 2 cut(s) 113, 303
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 4 cut(s) 35, 270, 568, 676
BstFNI CGCG 2 cut(s) 377, 970
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 3 cut(s) 359, 379, 970
BstKTI GATC 4 cut(s) 53, 340, 646, 1076
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 4 cut(s) 50, 337, 643, 1073
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 6 cut(s) 11, 155, 188, 197, 393, 908
BstNI CCWGG 3 cut(s) 275, 384, 688
BstSCI CCNGG 4 cut(s) 273, 382, 686, 991
BstSFI CTRYAG 1 cut(s) 933
BstUI CGCG 2 cut(s) 377, 970
BstV1I GCAGC 3 cut(s) 191, 952, 956
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 1073
BstYI RGATCY 1 cut(s) 1073
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 5 cut(s) 5, 224, 255, 750, 1050
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 4 cut(s) 35, 270, 568, 676
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 330, 396
BveI ACCTGC 2 cut(s) 653, 751
Cac8I GCNNGC 3 cut(s) 198, 321, 437
CfoI GCGC 3 cut(s) 359, 379, 970
Cfr10I RCCGGY 2 cut(s) 196, 1046
Cfr13I GGNCC 3 cut(s) 791, 998, 1049
CseI GACGC 2 cut(s) 147, 180
Csp6I GTAC 4 cut(s) 247, 524, 617, 738
CspCI CAANNNNNGTGG 2 cut(s) 995, 1030
CviAII CATG 5 cut(s) 251, 409, 503, 809, 1042
CviQI GTAC 4 cut(s) 247, 524, 617, 738
DdeI CTNAG 2 cut(s) 113, 303
DinI GGCGCC 1 cut(s) 358
DpnI GATC 4 cut(s) 52, 339, 645, 1075
DpnII GATC 4 cut(s) 50, 337, 643, 1073
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 791, 998
Eco81I CCTNAGG 1 cut(s) 303
EcoRII CCWGG 3 cut(s) 273, 382, 686
EcoT14I CCWWGG 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 5 cut(s) 254, 412, 506, 812, 1045
FatI CATG 5 cut(s) 250, 408, 502, 808, 1041
Fnu4HI GCNGC 8 cut(s) 12, 15, 150, 153, 156, 180, 945, 966
FokI GGATG 4 cut(s) 22, 257, 575, 683
Fsp4HI GCNGC 8 cut(s) 12, 15, 150, 153, 156, 180, 945, 966
GlaI GCGC 3 cut(s) 358, 378, 969
GluI GCNGC 8 cut(s) 12, 15, 150, 153, 156, 180, 945, 966
GsaI CCCAGC 1 cut(s) 1055
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 5 cut(s) 5, 224, 255, 750, 1050
HapII CCGG 7 cut(s) 197, 225, 314, 440, 463, 993, 1047
HgaI GACGC 2 cut(s) 147, 180
HhaI GCGC 3 cut(s) 359, 379, 970
Hin1I GRCGYC 3 cut(s) 158, 191, 357
Hin1II CATG 5 cut(s) 254, 412, 506, 812, 1045
Hin6I GCGC 3 cut(s) 357, 377, 968
HinP1I GCGC 3 cut(s) 357, 377, 968
HinfI GANTC 9 cut(s) 43, 171, 228, 290, 366, 459, 477, 496, 879
HpaII CCGG 7 cut(s) 197, 225, 314, 440, 463, 993, 1047
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 6 cut(s) 50, 116, 298, 342, 427, 613
Hpy188III TCNNGA 5 cut(s) 209, 314, 349, 551, 953
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 7 cut(s) 73, 77, 96, 242, 565, 737, 870
HpyCH4III ACNGT 3 cut(s) 124, 523, 982
HpyCH4IV ACGT 2 cut(s) 615, 905
HpyCH4V TGCA 5 cut(s) 473, 760, 896, 978, 1006
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 155, 188, 197, 393, 908
HpyF3I CTNAG 2 cut(s) 113, 303
HpySE526I ACGT 2 cut(s) 615, 905
Hsp92I GRCGYC 3 cut(s) 158, 191, 357
Hsp92II CATG 5 cut(s) 254, 412, 506, 812, 1045
HspAI GCGC 3 cut(s) 357, 377, 968
KasI GGCGCC 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 313
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 4 cut(s) 50, 337, 643, 1073
LmnI GCTCC 6 cut(s) 298, 316, 432, 592, 886, 899
Lsp1109I GCAGC 3 cut(s) 191, 952, 956
LweI GCATC 2 cut(s) 396, 617
MaeII ACGT 2 cut(s) 615, 905
MaeIII GTNAC 3 cut(s) 307, 682, 694
MalI GATC 4 cut(s) 52, 339, 645, 1075
MboI GATC 4 cut(s) 50, 337, 643, 1073
MboII GAAGA 3 cut(s) 153, 285, 364
MflI RGATCY 1 cut(s) 1073
MhlI GDGCHC 1 cut(s) 807
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 357
MlyI GAGTC 5 cut(s) 37, 180, 375, 468, 888
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 843
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 603, 657
MslI CAYNNNNRTG 2 cut(s) 23, 531
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 7 cut(s) 197, 225, 314, 440, 463, 993, 1047
MspR9I CCNGG 4 cut(s) 275, 384, 688, 993
MvaI CCWGG 3 cut(s) 275, 384, 688
MvnI CGCG 2 cut(s) 377, 970
MwoI GCNNNNNNNGC 6 cut(s) 11, 155, 188, 197, 393, 908
NaeI GCCGGC 1 cut(s) 198
NarI GGCGCC 1 cut(s) 357
NciI CCSGG 1 cut(s) 993
NcoI CCATGG 1 cut(s) 250
NdeII GATC 4 cut(s) 50, 337, 643, 1073
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 5 cut(s) 254, 412, 506, 812, 1045
NlaIV GGNNCC 5 cut(s) 27, 300, 358, 509, 594
NmeAIII GCCGAG 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdiI GCCGGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 4 cut(s) 228, 290, 477, 496
PkrI GCNGC 8 cut(s) 13, 16, 151, 154, 157, 181, 946, 967
Ple19I CGATCG 1 cut(s) 340
PleI GAGTC 5 cut(s) 37, 179, 374, 467, 887
PluTI GGCGCC 1 cut(s) 360
PpsI GAGTC 5 cut(s) 37, 179, 374, 467, 887
Psp1406I AACGTT 1 cut(s) 905
Psp6I CCWGG 3 cut(s) 273, 382, 686
PspFI CCCAGC 1 cut(s) 1051
PspGI CCWGG 3 cut(s) 273, 382, 686
PspN4I GGNNCC 5 cut(s) 27, 300, 358, 509, 594
PspPI GGNCC 3 cut(s) 791, 998, 1049
PsrI GAACNNNNNNTAC 2 cut(s) 933, 965
PsuI RGATCY 1 cut(s) 1073
PvuI CGATCG 1 cut(s) 340
RsaI GTAC 4 cut(s) 248, 525, 618, 739
RsaNI GTAC 4 cut(s) 247, 524, 617, 738
RseI CAYNNNNRTG 2 cut(s) 23, 531
SaqAI TTAA 2 cut(s) 603, 657
SatI GCNGC 8 cut(s) 12, 15, 150, 153, 156, 180, 945, 966
Sau3AI GATC 4 cut(s) 50, 337, 643, 1073
Sau96I GGNCC 3 cut(s) 791, 998, 1049
SchI GAGTC 5 cut(s) 37, 180, 375, 468, 888
ScrFI CCNGG 4 cut(s) 275, 384, 688, 993
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 2 cut(s) 396, 617
SfcI CTRYAG 1 cut(s) 933
SfoI GGCGCC 1 cut(s) 358
SinI GGWCC 2 cut(s) 791, 998
SmiMI CAYNNNNRTG 2 cut(s) 23, 531
SmlI CTYRAG 2 cut(s) 491, 953
SmoI CTYRAG 2 cut(s) 491, 953
SsiI CCGC 6 cut(s) 12, 15, 149, 152, 155, 970
SspDI GGCGCC 1 cut(s) 356
StyD4I CCNGG 4 cut(s) 273, 382, 686, 991
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 124, 523, 982
TaiI ACGT 2 cut(s) 618, 908
TaqI TCGA 2 cut(s) 174, 1011
TatI WGTACW 1 cut(s) 523
TauI GCSGC 5 cut(s) 14, 17, 152, 155, 158
TfiI GAWTC 4 cut(s) 228, 290, 477, 496
Tru1I TTAA 2 cut(s) 603, 657
Tru9I TTAA 2 cut(s) 603, 657
TscAI CASTG 2 cut(s) 330, 403
TseI GCWGC 3 cut(s) 179, 944, 965
TspDTI ATGAA 3 cut(s) 259, 469, 783
TspGWI ACGGA 1 cut(s) 1086
TspRI CASTG 2 cut(s) 330, 403
VpaK11BI GGWCC 2 cut(s) 791, 998
XapI RAATTY 4 cut(s) 754, 775, 797, 839
XmnI GAANNNNTTC 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.