pycom12g13120

Diaminopimelate epimerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
15593973 .. 15597383
3411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13120.3

Sequence Viewer

Length: 1227 bp
ATGAATATTTTATTAATTAGTAAAGATAAAGTGGGTACAGCACGTGAATTGAACACGTTGTTGCTACGACCAACGGCAAGTAAACAACAATTAGGTAGTCAGAGAGCCGCTGCGCCTGCCATCAGAGCCATGGGAGCCATAGCCGCCGCCATCTCACTGCCTCTCACCTCCCCAACTCGCCGATCCCTCACCTTCCTCACCGCCTCTCGTCGACCTTCTTCTCCGATCCTGAAGCTCAACTCTCCCTCTGCAGCTGCCTCGCCGAGAGCTCCTACTCTCCGTGTGTCGGCGGTCTCCTCTTCCATGAGCGTCGAAGCCGTCGAGAAAGCCTCCCCCGCTGCCTTTCTCGACCGAAGAGAAGCCGGATTCCTCCATTTCGTCAAGTACCACGGTCTCGGAAATGACTTCATCCTGGTTGATAACAGAGATTCTTCGGAGCCTAAAATTAGTCCGGAGCAGGCGGCAAAGCTATGTGATCGGAACTTTGGGATTGGTGCCGACGGAGTGATCTTCGCACTGCCGGGCATCAATGGCACTGATTATACCATGAGGATTTTTAATTCTGATGGGAGCGAGCCCGAGATGTGTGGTAATGGAGTCCGGTGTTTTGCCAGATTCATTGCCGAGCTGGAGAATTTGCAGGGAAAGCATAGCTTTAAAATTCATACTGGTGCCGGTCTAATTATTCCTGAAATTCAAGAAGATGGGAAGGTCAAAGTTGATATGGGGGAACCGATTCTTAAGGCATCAGATGTACCTACAAGACTGCCTGCAAACAAAGATCAATCTGTCGTTAAGTCGGGTCTCAATGTAGATGGAGTAACCTGGAATGTAACTTGTGTTAGTATGGGAAATCCACATTGTGTAACTTTTGGTACAGAAGGAGGCCAGAATATGAAGGTTGATGAATTGATGTTAGCTGACATCGGTCCCAAATTTGAGAATCATGAGGTGTTTCCAGCACGAACTAACACAGAATTTGTGCAAGTTTTCACGCCTTCACACCTAAAGATGCGTGTTTGGGAGCGTGGGGCAGGAGCAACACTTGCTTGCGGAACTGGTGCTTGTGCTGTAGTTGTTGCCGCAGTTCTTGAGGGTCGTGCTGAGCGAAATTGCACGGTTGATCTACCTGGAGGGCCGTTGCAGATTGAGTGGAGAGAGGAGAACAATCACATCTACATGACAGGCCCGGCTGAAGTCGTATTTTACGGATCAGTGCCTCTATGA

Protein Analysis

409

Amino Acids

43.74

Weight (kDa)

7.08

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 494, 671
AccI GTMKAC 1 cut(s) 211
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 9 cut(s) 108, 144, 147, 201, 290, 336, 461, 1053, 1083
AclWI GGATC 3 cut(s) 177, 220, 1219
AcsI RAATTY 5 cut(s) 634, 660, 693, 935, 977
AcuI CTGAAG 2 cut(s) 251, 1215
AcvI CACGTG 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 863
AfaI GTAC 4 cut(s) 37, 386, 756, 877
AfiI CCNNNNNNNGG 1 cut(s) 286
AflII CTTAAG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 2 cut(s) 52, 698
AjnI CCWGG 3 cut(s) 411, 824, 1129
AluBI AGCT 7 cut(s) 235, 254, 269, 469, 628, 654, 920
AluI AGCT 7 cut(s) 235, 254, 269, 469, 628, 654, 920
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 3 cut(s) 298, 398, 809
AlwI GGATC 3 cut(s) 177, 220, 1219
Ama87I CYCGRG 1 cut(s) 578
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 3 cut(s) 886, 1136, 1186
ApeKI GCWGC 4 cut(s) 110, 251, 254, 338
ApoI RAATTY 5 cut(s) 634, 660, 693, 935, 977
AseI ATTAAT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 735
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 3 cut(s) 929, 1136, 1187
AsuC2I CCSGG 2 cut(s) 522, 1190
AsuHPI GGTGA 3 cut(s) 157, 181, 190
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 929
BanI GGYRCC 2 cut(s) 494, 671
BanII GRGCYC 2 cut(s) 271, 579
BbrPI CACGTG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 4 cut(s) 97, 241, 263, 325
BccI CCATC 5 cut(s) 128, 158, 560, 698, 809
BceAI ACGGC 3 cut(s) 90, 302, 1123
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 3 cut(s) 413, 826, 1131
BcnI CCSGG 2 cut(s) 522, 1190
BcoDI GTCTC 3 cut(s) 298, 398, 809
BfmI CTRYAG 2 cut(s) 249, 1071
BfrI CTTAAG 1 cut(s) 740
BisI GCNGC 9 cut(s) 108, 111, 144, 147, 252, 255, 339, 462, 1083
BlpI GCTNAGC 1 cut(s) 1104
BlsI GCNGC 9 cut(s) 109, 112, 145, 148, 253, 256, 340, 463, 1084
Bme1390I CCNGG 5 cut(s) 413, 522, 826, 1131, 1190
Bme18I GGWCC 1 cut(s) 929
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 3 cut(s) 929, 1136, 1187
BmiI GGNNCC 6 cut(s) 136, 438, 496, 673, 732, 931
BmrFI CCNGG 5 cut(s) 413, 522, 826, 1131, 1190
BmsI GCATC 3 cut(s) 534, 755, 1002
BoxI GACNNNNGTC 1 cut(s) 927
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 2 cut(s) 650, 1152
Bpu1102I GCTNAGC 1 cut(s) 1104
BpuEI CTTGAG 1 cut(s) 1112
BpuMI CCSGG 2 cut(s) 522, 1190
BsaAI YACGTR 1 cut(s) 44
BsaI GGTCTC 3 cut(s) 298, 398, 809
BsaJI CCNNGG 2 cut(s) 129, 388
BsaWI WCCGGW 2 cut(s) 451, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 2 cut(s) 673, 1063
Bse3DI GCAATG 1 cut(s) 618
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 3 cut(s) 413, 826, 1131
BseDI CCNNGG 2 cut(s) 129, 388
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 1095
BseNI ACTGG 2 cut(s) 673, 1063
BseRI GAGGAG 2 cut(s) 286, 1175
BseXI GCAGC 4 cut(s) 97, 241, 263, 325
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 3 cut(s) 888, 1138, 1188
BshNI GGYRCC 2 cut(s) 494, 671
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 6 cut(s) 363, 452, 521, 601, 675, 1190
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 298, 398, 809
BsmFI GGGAC 1 cut(s) 915
BsnI GGCC 3 cut(s) 888, 1138, 1188
Bso31I GGTCTC 3 cut(s) 298, 398, 809
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 271, 579
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
Bsp1720I GCTNAGC 1 cut(s) 1104
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 9 cut(s) 108, 144, 147, 201, 290, 336, 461, 1053, 1083
BspANI GGCC 3 cut(s) 888, 1138, 1188
BspCNI CTCAG 1 cut(s) 1096
BspEI TCCGGA 1 cut(s) 451
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 6 cut(s) 136, 438, 496, 673, 732, 931
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 3 cut(s) 177, 220, 1219
BspT107I GGYRCC 2 cut(s) 494, 671
BspTI CTTAAG 1 cut(s) 740
BspTNI GGTCTC 3 cut(s) 298, 398, 809
BsrDI GCAATG 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 674
BsrI ACTGG 2 cut(s) 673, 1063
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 2 cut(s) 129, 388
BssMI GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 413, 826, 1131
Bst4CI ACNGT 2 cut(s) 392, 1120
Bst6I CTCTTC 2 cut(s) 304, 349
BstAFI CTTAAG 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 1046
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 5 cut(s) 117, 459, 575, 771, 1051
BstDEI CTNAG 1 cut(s) 1104
BstDSI CCRYGG 2 cut(s) 129, 388
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 7 cut(s) 185, 228, 478, 510, 784, 1126, 1214
BstMAI GTCTC 3 cut(s) 298, 398, 809
BstMBI GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 8 cut(s) 116, 125, 134, 143, 335, 531, 646, 1046
BstNI CCWGG 3 cut(s) 413, 826, 1131
BstPAI GACNNNNGTC 1 cut(s) 927
BstSCI CCNGG 5 cut(s) 411, 520, 824, 1129, 1188
BstSFI CTRYAG 2 cut(s) 249, 1071
BstV1I GCAGC 4 cut(s) 97, 241, 263, 325
BsuRI GGCC 3 cut(s) 888, 1138, 1188
BtgI CCRYGG 2 cut(s) 129, 388
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 2 cut(s) 155, 515
BtsIMutI CAGTG 4 cut(s) 155, 515, 534, 1221
Cac8I GCNNGC 5 cut(s) 117, 459, 575, 771, 1051
CciI TCATGA 1 cut(s) 946
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 3 cut(s) 929, 1136, 1187
CseI GACGC 1 cut(s) 298
Csp6I GTAC 4 cut(s) 36, 385, 755, 876
CviAII CATG 5 cut(s) 130, 304, 547, 947, 1180
CviQI GTAC 4 cut(s) 36, 385, 755, 876
DdeI CTNAG 1 cut(s) 1104
DpnI GATC 7 cut(s) 184, 227, 477, 509, 783, 1125, 1213
DpnII GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
DraI TTTAAA 1 cut(s) 658
DraIII CACNNNGTG 1 cut(s) 863
Eam1104I CTCTTC 2 cut(s) 304, 349
EarI CTCTTC 2 cut(s) 304, 349
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 271, 579
Eco31I GGTCTC 3 cut(s) 298, 398, 809
Eco47I GGWCC 1 cut(s) 929
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 251, 1215
Eco72I CACGTG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 269
EcoRII CCWGG 3 cut(s) 411, 824, 1129
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 271, 579
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 5 cut(s) 133, 307, 550, 950, 1183
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 915
FatI CATG 5 cut(s) 129, 303, 546, 946, 1179
FauI CCCGC 1 cut(s) 343
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 9 cut(s) 108, 111, 144, 147, 252, 255, 339, 462, 1083
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 2 cut(s) 271, 579
Fsp4HI GCNGC 9 cut(s) 108, 111, 144, 147, 252, 255, 339, 462, 1083
GlaI GCGC 1 cut(s) 114
GluI GCNGC 9 cut(s) 108, 111, 144, 147, 252, 255, 339, 462, 1083
GsuI CTGGAG 2 cut(s) 650, 1152
HaeIII GGCC 3 cut(s) 888, 1138, 1188
HapII CCGG 6 cut(s) 363, 452, 521, 601, 675, 1190
HgaI GACGC 1 cut(s) 298
HhaI GCGC 1 cut(s) 115
Hin1II CATG 5 cut(s) 133, 307, 550, 950, 1183
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 212
HindII GTYRAC 1 cut(s) 212
HinfI GANTC 6 cut(s) 366, 428, 597, 615, 736, 943
HpaII CCGG 6 cut(s) 363, 452, 521, 601, 675, 1190
HphI GGTGA 3 cut(s) 157, 181, 190
Hpy166II GTNNAC 2 cut(s) 83, 212
Hpy188I TCNGA 8 cut(s) 102, 125, 225, 398, 436, 480, 565, 751
Hpy188III TCNNGA 8 cut(s) 229, 322, 347, 452, 689, 698, 947, 1091
Hpy8I GTNNAC 2 cut(s) 83, 212
Hpy99I CGWCG 4 cut(s) 213, 314, 323, 503
HpyAV CCTTC 6 cut(s) 202, 225, 703, 875, 892, 1008
HpyCH4III ACNGT 2 cut(s) 392, 1120
HpyCH4IV ACGT 2 cut(s) 43, 56
HpyCH4V TGCA 6 cut(s) 251, 640, 773, 985, 1116, 1144
HpyF10VI GCNNNNNNNGC 8 cut(s) 116, 125, 134, 143, 335, 531, 646, 1046
HpyF3I CTNAG 1 cut(s) 1104
HpySE526I ACGT 2 cut(s) 43, 56
Hsp92II CATG 5 cut(s) 133, 307, 550, 950, 1183
HspAI GCGC 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 451
Kzo9I GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
LmnI GCTCC 7 cut(s) 134, 274, 436, 454, 570, 1024, 1037
Lsp1109I GCAGC 4 cut(s) 97, 241, 263, 325
LweI GCATC 3 cut(s) 534, 755, 1002
MaeII ACGT 2 cut(s) 43, 56
MaeIII GTNAC 3 cut(s) 820, 832, 865
MalI GATC 7 cut(s) 184, 227, 477, 509, 783, 1125, 1213
MboI GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
MboII GAAGA 6 cut(s) 210, 291, 366, 423, 502, 713
MhlI GDGCHC 2 cut(s) 271, 579
MlyI GAGTC 1 cut(s) 606
MroI TCCGGA 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 735
MseI TTAA 5 cut(s) 14, 558, 657, 741, 795
MslI CAYNNNNRTG 2 cut(s) 669, 1178
MspA1I CMGCKG 3 cut(s) 110, 254, 338
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 6 cut(s) 363, 452, 521, 601, 675, 1190
MspR9I CCNGG 5 cut(s) 413, 522, 826, 1131, 1190
MvaI CCWGG 3 cut(s) 413, 826, 1131
MwoI GCNNNNNNNGC 8 cut(s) 116, 125, 134, 143, 335, 531, 646, 1046
NciI CCSGG 2 cut(s) 522, 1190
NcoI CCATGG 1 cut(s) 129
NdeII GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
NlaIII CATG 5 cut(s) 133, 307, 550, 950, 1183
NlaIV GGNNCC 6 cut(s) 136, 438, 496, 673, 732, 931
NmeAIII GCCGAG 2 cut(s) 288, 649
PagI TCATGA 1 cut(s) 946
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 1105
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 5 cut(s) 366, 428, 615, 736, 943
PkrI GCNGC 9 cut(s) 109, 112, 145, 148, 253, 256, 340, 463, 1084
PleI GAGTC 1 cut(s) 605
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 1 cut(s) 605
Ppu21I YACGTR 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 927
PshBI ATTAAT 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 411, 824, 1129
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 3 cut(s) 411, 824, 1129
PspN4I GGNNCC 6 cut(s) 136, 438, 496, 673, 732, 931
PspPI GGNCC 3 cut(s) 929, 1136, 1187
PstI CTGCAG 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 4 cut(s) 37, 386, 756, 877
RsaNI GTAC 4 cut(s) 36, 385, 755, 876
RseI CAYNNNNRTG 2 cut(s) 669, 1178
SacI GAGCTC 1 cut(s) 271
SalI GTCGAC 1 cut(s) 210
SaqAI TTAA 5 cut(s) 14, 558, 657, 741, 795
SatI GCNGC 9 cut(s) 108, 111, 144, 147, 252, 255, 339, 462, 1083
Sau3AI GATC 7 cut(s) 182, 225, 475, 507, 781, 1123, 1211
Sau96I GGNCC 3 cut(s) 929, 1136, 1187
SchI GAGTC 1 cut(s) 606
ScrFI CCNGG 5 cut(s) 413, 522, 826, 1131, 1190
SduI GDGCHC 2 cut(s) 271, 579
SfaNI GCATC 3 cut(s) 534, 755, 1002
SfcI CTRYAG 2 cut(s) 249, 1071
SinI GGWCC 1 cut(s) 929
SmiMI CAYNNNNRTG 2 cut(s) 669, 1178
SmlI CTYRAG 2 cut(s) 740, 1091
SmoI CTYRAG 2 cut(s) 740, 1091
SsiI CCGC 9 cut(s) 108, 144, 147, 201, 290, 336, 461, 1053, 1083
SspI AATATT 1 cut(s) 7
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 5 cut(s) 411, 520, 824, 1129, 1188
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 392, 1120
TaiI ACGT 2 cut(s) 46, 59
TaqI TCGA 4 cut(s) 211, 312, 321, 348
TaqII GACCGA 2 cut(s) 366, 917
TauI GCSGC 5 cut(s) 110, 146, 149, 464, 1085
TfiI GAWTC 5 cut(s) 366, 428, 615, 736, 943
Tru1I TTAA 5 cut(s) 14, 558, 657, 741, 795
Tru9I TTAA 5 cut(s) 14, 558, 657, 741, 795
TscAI CASTG 4 cut(s) 162, 522, 541, 1221
TseI GCWGC 4 cut(s) 110, 251, 254, 338
TspDTI ATGAA 6 cut(s) 17, 397, 607, 653, 911, 921
TspGWI ACGGA 3 cut(s) 269, 516, 1224
TspRI CASTG 4 cut(s) 162, 522, 541, 1221
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 929
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 5 cut(s) 634, 660, 693, 935, 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.