Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009534

Physical Location & Seq

Genomic Coordinates Forward (+)

21381832 .. 21386494

Gene Structure 4663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1136700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGAGCCATAGCCGCCGCCATTTCACTGCCTCTCACCTCCCCAACTCGCCGATCCCTCACCTTCCTCACCGCCTCTGGTCGACCTTCTTCTCCGATCCTGAAGCTCAACTCTCCCTCTGCAGCTGCCTCGCCGAGAGCTCCTACTCTCCGTGTGTCGGCGGTCTCCTCTTCCATGAGCGTCGAAGCCGTCGAGAAAGCCTCCCCCGCTGCCTTTCTCGACCGGAGAGAAGCCGGATTCCTCCATTTCGTCAAGTACCACGGCCTCGGAAATGACTTCATCCTGGTTGATAACAGAGGTGCTTCGGAGCCTAAAATTAGTCCGGAGCAGGCGGCAAAGCTATGTGATCGGAACTTTGGGATTGGTGCCGACGGAGTGATCTTCGCACTGCCGGGCATCAATGGCACTGATTATACCATGAGGATTTTTAATTCTGATGGGAGCGAGCCCGAGATGTGTGGTAATGGAGTCCGGTGTTTTGCCAGATTCATTGCCGAGCTGGAGAATTTGCAGGGAAAGCATAGCTTTAAGATTCATACTGGTGCCGGTCTAATTATTCCTGAAATTCAAGAAGATGGGAAGGTCAAAGTTGATATGGGGGAACCGATTCTTAAGGCATCAGATGTACCTACAAGACTGCCTGCAAACAAAGATCAATCTGTCGTTAAGTCGGGTCTCGATGTAGATGGAGTAACCTGGAATGTAACTTGTGTTAGTATGGGAAATCCTCATTGTGTAACTTTTGGTACAGAAGGAAGCCAGAATATGAAGGTTGATGAATTGATGTTAGCTGACATCGGTCCCAAATTTGAGAATCATGAGGTGTTTCCTGCACGAACTAACACAGAATTTGTGCAAGTTTTCACTCCTTCACACCTAAAGATGCGTGTTTGGGAGCGTGGGGCAGGAGCAACACTTGCTTGCGGAACTGGTGCTTGTGCTGTAGTTGTTGCCGCAGTTCTTGAGGGGCGTGCTGAGCGAAATTGCACGGTTGATCTACCTGGAGGGCCGTTGCAGATTGAGTGGAGAGAGGAGAACAATCACATCTACATGACAGGCCCGGCTGAAGTCGTATTTTACGGATCAGTGCCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008837 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009089 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016854 GO:0016855 GO:0019752 GO:0036361 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0047661 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DAP_epimerase

Protein Analysis

366

Amino Acids

39.0

Weight (kDa)

5.81

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAP_epimerase	PF01678	83 - 203	6.3e-33	Diaminopimelate epimerase
DAP_epimerase	PF01678	237 - 357	9.3e-33	Diaminopimelate epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53580
fragaria_vesca	FvH4_6g14490
malus_domestica	MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1
prunus_persica	Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1
pyrus_communis	pycom04g10870 pycom07g06870 pycom12g13120
rosa_chinensis	RchiOBHm_Chr3g0467571
rosa_laevigata	RLG00000024489
rosa_multiflora	Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016
rosa_roxburghii	Rroxscaffold_6G00413580
rosa_rugosa	Rorug03G0088200
rosa_samantha	Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700
rosa_wichuraiana	Rw3G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	365, 542
AccI	GTMKAC	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	8 cut(s)	15, 18, 72, 161, 207, 332, 924, 954
AclWI	GGATC	3 cut(s)	48, 91, 1090
AcsI	RAATTY	4 cut(s)	505, 564, 806, 848
AcuI	CTGAAG	2 cut(s)	122, 1086
AfaI	GTAC	3 cut(s)	257, 627, 748
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	1 cut(s)	569
AjnI	CCWGG	3 cut(s)	282, 695, 1000
AluBI	AGCT	7 cut(s)	106, 125, 140, 340, 499, 525, 791
AluI	AGCT	7 cut(s)	106, 125, 140, 340, 499, 525, 791
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	169, 680
AlwI	GGATC	3 cut(s)	48, 91, 1090
Ama87I	CYCGRG	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	3 cut(s)	262, 1007, 1057
ApeKI	GCWGC	3 cut(s)	122, 125, 209
ApoI	RAATTY	4 cut(s)	505, 564, 806, 848
Asp700I	GAANNNNTTC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	800, 1007, 1058
AsuC2I	CCSGG	2 cut(s)	393, 1061
AsuHPI	GGTGA	3 cut(s)	28, 52, 61
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	800
BanI	GGYRCC	2 cut(s)	365, 542
BanII	GRGCYC	2 cut(s)	142, 450
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	112, 134, 196
BccI	CCATC	3 cut(s)	431, 569, 680
BceAI	ACGGC	3 cut(s)	173, 277, 994
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciT130I	CCWGG	3 cut(s)	284, 697, 1002
BcnI	CCSGG	2 cut(s)	393, 1061
BcoDI	GTCTC	2 cut(s)	169, 680
BfmI	CTRYAG	2 cut(s)	120, 942
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	7 cut(s)	15, 18, 123, 126, 210, 333, 954
BlpI	GCTNAGC	1 cut(s)	975
BlsI	GCNGC	7 cut(s)	16, 19, 124, 127, 211, 334, 955
Bme1390I	CCNGG	5 cut(s)	284, 393, 697, 1002, 1061
Bme18I	GGWCC	1 cut(s)	800
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	3 cut(s)	800, 1007, 1058
BmiI	GGNNCC	6 cut(s)	7, 309, 367, 544, 603, 802
BmrFI	CCNGG	5 cut(s)	284, 393, 697, 1002, 1061
BmsI	GCATC	3 cut(s)	405, 626, 873
BoxI	GACNNNNGTC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	521, 1023
Bpu1102I	GCTNAGC	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	983
BpuMI	CCSGG	2 cut(s)	393, 1061
BsaI	GGTCTC	2 cut(s)	169, 680
BsaJI	CCNNGG	2 cut(s)	259, 265
BsaWI	WCCGGW	3 cut(s)	222, 322, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	544, 934
Bse3DI	GCAATG	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	3 cut(s)	284, 697, 1002
BseDI	CCNNGG	2 cut(s)	259, 265
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	966
BseNI	ACTGG	2 cut(s)	544, 934
BseRI	GAGGAG	2 cut(s)	157, 1046
BseXI	GCAGC	3 cut(s)	112, 134, 196
BsgI	GTGCAG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	264, 1009, 1059
BshNI	GGYRCC	2 cut(s)	365, 542
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	7 cut(s)	223, 234, 323, 392, 472, 546, 1061
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	169, 680
BsmFI	GGGAC	1 cut(s)	786
BsnI	GGCC	3 cut(s)	264, 1009, 1059
Bso31I	GGTCTC	2 cut(s)	169, 680
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	142, 450
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
Bsp1720I	GCTNAGC	1 cut(s)	975
BspACI	CCGC	8 cut(s)	15, 18, 72, 161, 207, 332, 924, 954
BspANI	GGCC	3 cut(s)	264, 1009, 1059
BspCNI	CTCAG	1 cut(s)	967
BspEI	TCCGGA	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	6 cut(s)	7, 309, 367, 544, 603, 802
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	3 cut(s)	48, 91, 1090
BspT107I	GGYRCC	2 cut(s)	365, 542
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	2 cut(s)	169, 680
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	544, 934
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	259, 265
BssMI	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
Bst2UI	CCWGG	3 cut(s)	284, 697, 1002
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	1 cut(s)	175
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	5 cut(s)	330, 446, 642, 922, 972
BstDEI	CTNAG	1 cut(s)	975
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	7 cut(s)	56, 99, 349, 381, 655, 997, 1085
BstMAI	GTCTC	2 cut(s)	169, 680
BstMBI	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 206, 402, 517, 917, 976
BstNI	CCWGG	3 cut(s)	284, 697, 1002
BstPAI	GACNNNNGTC	1 cut(s)	798
BstSCI	CCNGG	5 cut(s)	282, 391, 695, 1000, 1059
BstSFI	CTRYAG	2 cut(s)	120, 942
BstV1I	GCAGC	3 cut(s)	112, 134, 196
BsuRI	GGCC	3 cut(s)	264, 1009, 1059
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	2 cut(s)	26, 386
BtsIMutI	CAGTG	4 cut(s)	26, 386, 405, 1092
Cac8I	GCNNGC	5 cut(s)	330, 446, 642, 922, 972
CciI	TCATGA	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	3 cut(s)	800, 1007, 1058
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	256, 626, 747
CviAII	CATG	4 cut(s)	175, 418, 818, 1051
CviQI	GTAC	3 cut(s)	256, 626, 747
DdeI	CTNAG	1 cut(s)	975
DpnI	GATC	7 cut(s)	55, 98, 348, 380, 654, 996, 1084
DpnII	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	142, 450
Eco31I	GGTCTC	2 cut(s)	169, 680
Eco47I	GGWCC	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	122, 1086
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	3 cut(s)	282, 695, 1000
EcoT38I	GRGCYC	2 cut(s)	142, 450
FaeI	CATG	4 cut(s)	178, 421, 821, 1054
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	4 cut(s)	174, 417, 817, 1050
FauI	CCCGC	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	7 cut(s)	15, 18, 123, 126, 210, 333, 954
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	142, 450
Fsp4HI	GCNGC	7 cut(s)	15, 18, 123, 126, 210, 333, 954
GluI	GCNGC	7 cut(s)	15, 18, 123, 126, 210, 333, 954
GsuI	CTGGAG	2 cut(s)	521, 1023
HaeIII	GGCC	3 cut(s)	264, 1009, 1059
HapII	CCGG	7 cut(s)	223, 234, 323, 392, 472, 546, 1061
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	178, 421, 821, 1054
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	6 cut(s)	237, 468, 486, 532, 607, 814
HpaII	CCGG	7 cut(s)	223, 234, 323, 392, 472, 546, 1061
HphI	GGTGA	3 cut(s)	28, 52, 61
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	6 cut(s)	96, 269, 307, 351, 436, 622
Hpy188III	TCNNGA	9 cut(s)	100, 193, 218, 323, 560, 569, 677, 818, 962
Hpy8I	GTNNAC	1 cut(s)	83
Hpy99I	CGWCG	3 cut(s)	185, 194, 374
HpyAV	CCTTC	6 cut(s)	73, 96, 574, 746, 763, 879
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4V	TGCA	7 cut(s)	122, 511, 644, 833, 856, 987, 1015
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 206, 402, 517, 917, 976
HpyF3I	CTNAG	1 cut(s)	975
Hsp92II	CATG	4 cut(s)	178, 421, 821, 1054
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
LmnI	GCTCC	7 cut(s)	5, 145, 307, 325, 441, 895, 908
Lsp1109I	GCAGC	3 cut(s)	112, 134, 196
LweI	GCATC	3 cut(s)	405, 626, 873
MaeIII	GTNAC	3 cut(s)	691, 703, 736
MalI	GATC	7 cut(s)	55, 98, 348, 380, 654, 996, 1084
MboI	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
MboII	GAAGA	4 cut(s)	81, 162, 373, 584
MhlI	GDGCHC	2 cut(s)	142, 450
MluCI	AATT	9 cut(s)	315, 430, 505, 552, 564, 779, 806, 848, 982
MlyI	GAGTC	1 cut(s)	477
MroI	TCCGGA	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	4 cut(s)	429, 528, 612, 666
MslI	CAYNNNNRTG	2 cut(s)	540, 1049
MspA1I	CMGCKG	2 cut(s)	125, 209
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	7 cut(s)	223, 234, 323, 392, 472, 546, 1061
MspR9I	CCNGG	5 cut(s)	284, 393, 697, 1002, 1061
MvaI	CCWGG	3 cut(s)	284, 697, 1002
MwoI	GCNNNNNNNGC	6 cut(s)	14, 206, 402, 517, 917, 976
NciI	CCSGG	2 cut(s)	393, 1061
NdeII	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
NlaIII	CATG	4 cut(s)	178, 421, 821, 1054
NlaIV	GGNNCC	6 cut(s)	7, 309, 367, 544, 603, 802
NmeAIII	GCCGAG	2 cut(s)	159, 520
PagI	TCATGA	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	5 cut(s)	237, 486, 532, 607, 814
PkrI	GCNGC	7 cut(s)	16, 19, 124, 127, 211, 334, 955
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PshAI	GACNNNNGTC	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	282, 695, 1000
PspGI	CCWGG	3 cut(s)	282, 695, 1000
PspN4I	GGNNCC	6 cut(s)	7, 309, 367, 544, 603, 802
PspPI	GGNCC	3 cut(s)	800, 1007, 1058
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	3 cut(s)	257, 627, 748
RsaNI	GTAC	3 cut(s)	256, 626, 747
RseI	CAYNNNNRTG	2 cut(s)	540, 1049
SacI	GAGCTC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	429, 528, 612, 666
SatI	GCNGC	7 cut(s)	15, 18, 123, 126, 210, 333, 954
Sau3AI	GATC	7 cut(s)	53, 96, 346, 378, 652, 994, 1082
Sau96I	GGNCC	3 cut(s)	800, 1007, 1058
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	5 cut(s)	284, 393, 697, 1002, 1061
SduI	GDGCHC	2 cut(s)	142, 450
SfaNI	GCATC	3 cut(s)	405, 626, 873
SfcI	CTRYAG	2 cut(s)	120, 942
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	540, 1049
SmlI	CTYRAG	2 cut(s)	611, 962
SmoI	CTYRAG	2 cut(s)	611, 962
Sse9I	AATT	9 cut(s)	315, 430, 505, 552, 564, 779, 806, 848, 982
SsiI	CCGC	8 cut(s)	15, 18, 72, 161, 207, 332, 924, 954
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	5 cut(s)	282, 391, 695, 1000, 1059
TaaI	ACNGT	1 cut(s)	991
TaqI	TCGA	5 cut(s)	82, 183, 192, 219, 678
TaqII	GACCGA	1 cut(s)	788
TasI	AATT	9 cut(s)	315, 430, 505, 552, 564, 779, 806, 848, 982
TauI	GCSGC	4 cut(s)	17, 20, 335, 956
TfiI	GAWTC	5 cut(s)	237, 486, 532, 607, 814
Tru1I	TTAA	4 cut(s)	429, 528, 612, 666
Tru9I	TTAA	4 cut(s)	429, 528, 612, 666
TscAI	CASTG	4 cut(s)	33, 393, 412, 1092
TseI	GCWGC	3 cut(s)	122, 125, 209
TspDTI	ATGAA	5 cut(s)	268, 478, 524, 782, 792
TspGWI	ACGGA	3 cut(s)	140, 387, 1095
TspRI	CASTG	4 cut(s)	33, 393, 412, 1092
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	4 cut(s)	505, 564, 806, 848
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.