FvH4_6g14740

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009545
Physical Location & Seq
Reverse (-)
9090851 .. 9093042
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14740.t3

Sequence Viewer

Length: 1200 bp
ATGGGTATCAAAGTTTTGGTAGTATCTCTGATGCTAACTTCAATTCTTTTCTCTTTTCTGCACTTGATTCCAACCAGATTAACAACACCCACTCAGCCCATCATCAATCTGACCAAATCCAATATGAGTATTACTAACCCATATCCAGTGACCTTTTCATATCTGATCTCAGCTTCAAAAGGCGATTCCGTTAAACTCAAACGCATGCTCTATGCCCTTTATCATCCTGGAAATTACTATCTGATCCACATGGATTATGAAGCAACGGAAGCAGAACACAGAGACATAGCTGAGTTTGTGGGTGGAAACCCAGTTTTTGGGCAAGTGGGTAATGTTTGGATTGTGGGAAAACCCAACTTGGTAACCTATAGAGGACCAACCATGCTTGCTACCACTATTCATGCTTTGGCTCTGCTCTTGAGGACTTGCAGCAGGTGGGATTGGTTCATCAATCTCAGTGCTTCTGACTATCCTCTCATTACTCAAGATGATCTGATCCATGCCTTTTCTGACTTGCCAAGAGATCTCAATTTTATTCAGCACACCAGTCACTTGGGTTGGAAACTAAACAAGAGAGGCAAGCCTATTACAATAGACCCAGCACTCTACAGCCTCAATAAATCAGAGCTATGGTGGGTCATTAAACAAAGGACTCTCCCAACAGCTTTCAAGCTATACACAGGTTCAGCTTGGACAATGCTATCAAGGTCTTTTGCCGAATATTGCGTAGTGGGTTGGGACAATCTGCCCAGAACCCTCCTCCTCTACTACACCAACTTTGTCTCATCTCCTGAAGGTTACTTCCAGACTCTCATATGCAACTCAGAAGACTACAAAAACACCACCATCAACCATGACCTCCACTACATTTCATGGGATACACCTCCAAAGCAACATCCCAGGTCTCTCGGACTCAGAGATTTTAGAAGAATGGTTCAAAGCAACCGTCCATTCGCTAGAAAGTTCAAGGAGAATACCCCTGTGCTTAAAAAAATTGATCAACAGCTGCTTAAACGACGCCGCGGACAATTTGCTTATGGGGGATGGTGTTCTGGGAAAGAAAAGACGCAGAGTTTATGTTCAGGCCTGCAGAGTGAAAATTATGGAGTTTTAAGGCCAGGACCCGGTTCTAGGAGGTTGAAGTCATTGTTAACAAAACTTATTTCCACGAGGAATCATCAGAAGCAACAATGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

400

Amino Acids

45.87

Weight (kDa)

9.76

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 12 - 270 5.7e-74 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 423
AccB7I CCANNNNNTGG 1 cut(s) 317
AccII CGCG 1 cut(s) 1023
AciI CCGC 2 cut(s) 1021, 1023
AclWI GGATC 2 cut(s) 238, 490
AcuI CTGAAG 1 cut(s) 813
AcyI GRCGYC 1 cut(s) 1018
AfiI CCNNNNNNNGG 3 cut(s) 317, 1124, 1131
AgsI TTSAA 6 cut(s) 42, 177, 670, 938, 967, 1141
AjnI CCWGG 3 cut(s) 226, 899, 1117
AluBI AGCT 7 cut(s) 173, 290, 628, 665, 673, 689, 1006
AluI AGCT 7 cut(s) 173, 290, 628, 665, 673, 689, 1006
Alw26I GTCTC 3 cut(s) 276, 787, 909
AlwI GGATC 2 cut(s) 238, 490
AoxI GGCC 2 cut(s) 1084, 1115
ApeKI GCWGC 2 cut(s) 429, 1006
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspS9I GGNCC 2 cut(s) 374, 1121
AsuC2I CCSGG 1 cut(s) 1125
AvaII GGWCC 2 cut(s) 374, 1121
BauI CACGAG 1 cut(s) 1168
BbsI GAAGAC 1 cut(s) 834
BbvI GCAGC 2 cut(s) 441, 993
BccI CCATC 3 cut(s) 107, 854, 1038
BciT130I CCWGG 3 cut(s) 228, 901, 1119
BciVI GTATCC 1 cut(s) 871
BclI TGATCA 1 cut(s) 997
BcnI CCSGG 1 cut(s) 1125
BcoDI GTCTC 3 cut(s) 276, 787, 909
BfaI CTAG 2 cut(s) 957, 1131
BfmI CTRYAG 3 cut(s) 367, 607, 1088
BfuAI ACCTGC 1 cut(s) 423
BfuI GTATCC 1 cut(s) 871
BglII AGATCT 1 cut(s) 523
BisI GCNGC 3 cut(s) 430, 1007, 1021
BlsI GCNGC 3 cut(s) 431, 1008, 1022
Bme1390I CCNGG 4 cut(s) 228, 901, 1119, 1125
Bme18I GGWCC 2 cut(s) 374, 1121
BmgT120I GGNCC 2 cut(s) 374, 1121
BmiI GGNNCC 1 cut(s) 1123
BmrFI CCNGG 4 cut(s) 228, 901, 1119, 1125
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 834
BpuEI CTTGAG 2 cut(s) 439, 468
BpuMI CCSGG 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 1018
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 2 cut(s) 899, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 1124, 1131
Bse1I ACTGG 3 cut(s) 146, 311, 546
BseBI CCWGG 3 cut(s) 228, 901, 1119
BseDI CCNNGG 2 cut(s) 899, 1021
BseGI GGATG 3 cut(s) 223, 895, 1049
BseLI CCNNNNNNNGG 3 cut(s) 317, 1124, 1131
BseMII CTCAG 6 cut(s) 107, 183, 282, 469, 837, 928
BseNI ACTGG 3 cut(s) 146, 311, 546
BseRI GAGGAG 2 cut(s) 749, 752
BseXI GCAGC 2 cut(s) 441, 993
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 1023
BshFI GGCC 2 cut(s) 1086, 1117
BsiSI CCGG 1 cut(s) 1125
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 3 cut(s) 317, 1124, 1131
BsmAI GTCTC 3 cut(s) 276, 787, 909
BsmFI GGGAC 1 cut(s) 752
BsnI GGCC 2 cut(s) 1086, 1117
Bso31I GGTCTC 1 cut(s) 909
Bsp143I GATC 6 cut(s) 165, 243, 490, 495, 523, 997
BspACI CCGC 2 cut(s) 1021, 1023
BspANI GGCC 2 cut(s) 1086, 1117
BspCNI CTCAG 6 cut(s) 106, 182, 283, 468, 836, 927
BspFNI CGCG 1 cut(s) 1023
BspLI GGNNCC 1 cut(s) 1123
BspMAI CTGCAG 1 cut(s) 1092
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 2 cut(s) 238, 490
BspTNI GGTCTC 1 cut(s) 909
BsrI ACTGG 3 cut(s) 146, 311, 546
BssECI CCNNGG 2 cut(s) 899, 1021
BssMI GATC 6 cut(s) 165, 243, 490, 495, 523, 997
BssNI GRCGYC 1 cut(s) 1018
BssSI CACGAG 1 cut(s) 1168
Bst2BI CACGAG 1 cut(s) 1168
Bst2UI CCWGG 3 cut(s) 228, 901, 1119
Bst4CI ACNGT 1 cut(s) 947
BstACI GRCGYC 1 cut(s) 1018
BstC8I GCNNGC 4 cut(s) 206, 387, 581, 1088
BstDEI CTNAG 6 cut(s) 93, 169, 291, 455, 823, 914
BstDSI CCRYGG 1 cut(s) 1021
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 3 cut(s) 223, 895, 1049
BstFNI CGCG 1 cut(s) 1023
BstKTI GATC 6 cut(s) 168, 246, 493, 498, 526, 1000
BstMAI GTCTC 3 cut(s) 276, 787, 909
BstMBI GATC 6 cut(s) 165, 243, 490, 495, 523, 997
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 3 cut(s) 228, 901, 1119
BstNSI RCATGY 1 cut(s) 208
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 4 cut(s) 226, 899, 1117, 1123
BstSFI CTRYAG 3 cut(s) 367, 607, 1088
BstUI CGCG 1 cut(s) 1023
BstV1I GCAGC 2 cut(s) 441, 993
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 553
BstYI RGATCY 1 cut(s) 523
BsuI GTATCC 1 cut(s) 871
BsuRI GGCC 2 cut(s) 1086, 1117
BtgI CCRYGG 1 cut(s) 1021
BtsCI GGATG 3 cut(s) 223, 895, 1049
BtsIMutI CAGTG 2 cut(s) 153, 463
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 4 cut(s) 206, 387, 581, 1088
Cfr13I GGNCC 2 cut(s) 374, 1121
Cfr42I CCGCGG 1 cut(s) 1024
CseI GACGC 2 cut(s) 1026, 1075
CviAII CATG 7 cut(s) 205, 250, 382, 401, 500, 854, 873
DdeI CTNAG 6 cut(s) 93, 169, 291, 455, 823, 914
DpnI GATC 6 cut(s) 167, 245, 492, 497, 525, 999
DpnII GATC 6 cut(s) 165, 243, 490, 495, 523, 997
Eco147I AGGCCT 1 cut(s) 1086
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 2 cut(s) 374, 1121
Eco57I CTGAAG 1 cut(s) 813
Eco91I GGTNACC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 1121
EcoO65I GGTNACC 1 cut(s) 361
EcoRII CCWGG 3 cut(s) 226, 899, 1117
FaeI CATG 7 cut(s) 208, 253, 385, 404, 503, 857, 876
FaqI GGGAC 1 cut(s) 752
FatI CATG 7 cut(s) 204, 249, 381, 400, 499, 853, 872
FauNDI CATATG 1 cut(s) 815
FbaI TGATCA 1 cut(s) 997
Fnu4HI GCNGC 3 cut(s) 430, 1007, 1021
FokI GGATG 3 cut(s) 210, 882, 1056
Fsp4HI GCNGC 3 cut(s) 430, 1007, 1021
FspBI CTAG 2 cut(s) 957, 1131
GluI GCNGC 3 cut(s) 430, 1007, 1021
GsaI CCCAGC 1 cut(s) 602
HaeIII GGCC 2 cut(s) 1086, 1117
HapII CCGG 1 cut(s) 1125
HgaI GACGC 2 cut(s) 1026, 1075
Hin1I GRCGYC 1 cut(s) 1018
Hin1II CATG 7 cut(s) 208, 253, 385, 404, 503, 857, 876
HincII GTYRAC 1 cut(s) 1152
HindII GTYRAC 1 cut(s) 1152
HinfI GANTC 6 cut(s) 67, 185, 652, 808, 912, 1174
HpaI GTTAAC 1 cut(s) 1152
HpaII CCGG 1 cut(s) 1125
Hpy166II GTNNAC 1 cut(s) 1152
Hpy188III TCNNGA 4 cut(s) 418, 485, 791, 805
Hpy8I GTNNAC 1 cut(s) 1152
Hpy99I CGWCG 1 cut(s) 1020
HpyAV CCTTC 1 cut(s) 788
HpyCH4III ACNGT 1 cut(s) 947
HpyCH4V TGCA 5 cut(s) 61, 429, 819, 1090, 1194
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 6 cut(s) 93, 169, 291, 455, 823, 914
Hsp92I GRCGYC 1 cut(s) 1018
Hsp92II CATG 7 cut(s) 208, 253, 385, 404, 503, 857, 876
Ksp22I TGATCA 1 cut(s) 997
KspAI GTTAAC 1 cut(s) 1152
KspI CCGCGG 1 cut(s) 1024
Kzo9I GATC 6 cut(s) 165, 243, 490, 495, 523, 997
Lsp1109I GCAGC 2 cut(s) 441, 993
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 957, 1131
MaeIII GTNAC 4 cut(s) 148, 361, 548, 797
MalI GATC 6 cut(s) 167, 245, 492, 497, 525, 999
MboI GATC 6 cut(s) 165, 243, 490, 495, 523, 997
MboII GAAGA 2 cut(s) 839, 939
MflI RGATCY 1 cut(s) 523
MluCI AATT 6 cut(s) 42, 232, 529, 993, 1028, 1099
MlyI GAGTC 3 cut(s) 646, 802, 906
MmeI TCCRAC 2 cut(s) 95, 539
MseI TTAA 7 cut(s) 80, 192, 642, 987, 1011, 1112, 1151
MspA1I CMGCKG 2 cut(s) 1006, 1023
MspI CCGG 1 cut(s) 1125
MspR9I CCNGG 4 cut(s) 228, 901, 1119, 1125
MvaI CCWGG 3 cut(s) 228, 901, 1119
MvnI CGCG 1 cut(s) 1023
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 1125
NdeI CATATG 1 cut(s) 815
NdeII GATC 6 cut(s) 165, 243, 490, 495, 523, 997
NlaIII CATG 7 cut(s) 208, 253, 385, 404, 503, 857, 876
NlaIV GGNNCC 1 cut(s) 1123
NmuCI GTSAC 2 cut(s) 148, 548
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PaqCI CACCTGC 1 cut(s) 423
PceI AGGCCT 1 cut(s) 1086
PfeI GAWTC 3 cut(s) 67, 185, 1174
PflMI CCANNNNNTGG 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 3 cut(s) 431, 1008, 1022
PleI GAGTC 3 cut(s) 646, 802, 906
PpsI GAGTC 3 cut(s) 646, 802, 906
PpuMI RGGWCCY 1 cut(s) 1121
Psp5II RGGWCCY 1 cut(s) 1121
Psp6I CCWGG 3 cut(s) 226, 899, 1117
PspEI GGTNACC 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 3 cut(s) 226, 899, 1117
PspN4I GGNNCC 1 cut(s) 1123
PspPI GGNCC 2 cut(s) 374, 1121
PspPPI RGGWCCY 1 cut(s) 1121
PstI CTGCAG 1 cut(s) 1092
PsuI RGATCY 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 1006
SacII CCGCGG 1 cut(s) 1024
SaqAI TTAA 7 cut(s) 80, 192, 642, 987, 1011, 1112, 1151
SatI GCNGC 3 cut(s) 430, 1007, 1021
Sau3AI GATC 6 cut(s) 165, 243, 490, 495, 523, 997
Sau96I GGNCC 2 cut(s) 374, 1121
SchI GAGTC 3 cut(s) 646, 802, 906
ScrFI CCNGG 4 cut(s) 228, 901, 1119, 1125
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 3 cut(s) 367, 607, 1088
Sfr303I CCGCGG 1 cut(s) 1024
SgrBI CCGCGG 1 cut(s) 1024
SinI GGWCC 2 cut(s) 374, 1121
SmlI CTYRAG 2 cut(s) 418, 483
SmoI CTYRAG 2 cut(s) 418, 483
SphI GCATGC 1 cut(s) 208
Sse9I AATT 6 cut(s) 42, 232, 529, 993, 1028, 1099
SseBI AGGCCT 1 cut(s) 1086
SsiI CCGC 2 cut(s) 1021, 1023
SspI AATATT 1 cut(s) 722
SspMI CTAG 2 cut(s) 957, 1131
StuI AGGCCT 1 cut(s) 1086
StyD4I CCNGG 4 cut(s) 226, 899, 1117, 1123
TaaI ACNGT 1 cut(s) 947
TasI AATT 6 cut(s) 42, 232, 529, 993, 1028, 1099
TauI GCSGC 1 cut(s) 1023
TfiI GAWTC 3 cut(s) 67, 185, 1174
Tru1I TTAA 7 cut(s) 80, 192, 642, 987, 1011, 1112, 1151
Tru9I TTAA 7 cut(s) 80, 192, 642, 987, 1011, 1112, 1151
TscAI CASTG 2 cut(s) 153, 463
TseFI GTSAC 2 cut(s) 148, 548
TseI GCWGC 2 cut(s) 429, 1006
Tsp45I GTSAC 2 cut(s) 148, 548
TspDTI ATGAA 5 cut(s) 147, 273, 389, 436, 861
TspGWI ACGGA 2 cut(s) 178, 281
TspRI CASTG 2 cut(s) 153, 463
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 374, 1121
XceI RCATGY 1 cut(s) 208
XspI CTAG 2 cut(s) 957, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.