Rroxscaffold_6G00389660

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009545
Physical Location & Seq
Forward (+)
3660402 .. 3664519
4118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389660.1

Sequence Viewer

Length: 1074 bp
ATGAGTATTACTAAGCCATATCCAGTGACCTTTTCATATCTGATCTCAGCTTCAAAAGGCGATTCCCTGAAGCTCAAACGCATGCTCTATGCTCTTTATCATCCTGGAAATTACTATCTGATCCACATGGATTATGAAGCAACGGAGGCAGAGCACAGAGACATAGCTGAGTTTGTGGGTGGAAATCCAGTTTTTGGGGAAGTGGGTAATGTTTGGATTGTGGGAAAACCCAATTTGGTAACCTATAGAGGACCAACCATGCTTGCTACCACCATTCATGCTTTGGCTTTGCTCTTGAGGACTTGCAGATGGGATTGGTTCATCAATCTTAGTGCTTCTGACTACCCTCTAATTACTCAAGATGACCTGATCCATGCCTTTTCTTACTTGCCAAGAGATCTCAATTTCATTCAGCACTCCAGTCACTTGGGTTGGAAACTGAATAAGAGAGGCAAGCCCATAACAATAGACCCGGCACTTTACAGCCTCAATCAATCAGAATTATGGTGGGTTATTAAACAAAGGGCTCTCCCAACTGCTTTCAAGCTATACACAGGTTCAGCTTGGACAATGATATCAAGATCTTTTGCCGAGTATTGCGTAGTGGGTTGGGATAATCTGCCCAGAACCCTCCTCCTCTACTACACCAACTTCGTCTCATCTCCGGAAGGTTACTTCCAGACTGTCATATGCAACTCAGAAGACTACAAAAACACCACAATCAACCATGACCTCCACTACATTTCATGGGATACACCTCCAAAGCAGCATCCCAGGTCTCTCGGACTCAGAGACTTTAAAAGAATGGTTCAAAGTAACCGTCCATTTGCTAGAAAGTTCAAGCAAAATGTCCCGGTGCTTAAAAAAATTGATCAACAACTGCTTAAACGACGCCGTGGAGAATTTGCTTATGGTGGATGGTGTTTGGGGAAAGAAAAGACGCAGAGGTCATGCTCAGCTTTGCAGAGTGAAAATTATGGAGTTTTAAGGCCAGGACCCGGATCTAGGAGGTTGAAGTCCTTGTTAACAAAACTCCTTTCCACGAGGAATCATCAGAAGCAACAGTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

357

Amino Acids

41.32

Weight (kDa)

9.68

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 12 - 269 4.1e-72 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 946
AccB7I CCANNNNNTGG 1 cut(s) 194
AccIII TCCGGA 1 cut(s) 664
AclWI GGATC 3 cut(s) 115, 364, 1009
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 892
AfiI CCNNNNNNNGG 3 cut(s) 194, 998, 1005
AgsI TTSAA 5 cut(s) 54, 544, 812, 841, 1015
AjnI CCWGG 3 cut(s) 103, 773, 991
AluBI AGCT 6 cut(s) 50, 73, 167, 547, 563, 959
AluI AGCT 6 cut(s) 50, 73, 167, 547, 563, 959
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 4 cut(s) 153, 661, 783, 786
AlwI GGATC 3 cut(s) 115, 364, 1009
Aor13HI TCCGGA 1 cut(s) 664
AoxI GGCC 1 cut(s) 989
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 1 cut(s) 902
ArsI GACNNNNNNTTYG 2 cut(s) 805, 837
AspS9I GGNCC 2 cut(s) 251, 995
AsuC2I CCSGG 3 cut(s) 473, 854, 999
AvaII GGWCC 2 cut(s) 251, 995
BanII GRGCYC 1 cut(s) 529
BauI CACGAG 1 cut(s) 1042
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 778
BccI CCATC 2 cut(s) 303, 912
BceAI ACGGC 1 cut(s) 879
BciT130I CCWGG 3 cut(s) 105, 775, 993
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 3 cut(s) 473, 854, 999
BcoDI GTCTC 4 cut(s) 153, 661, 783, 786
BfaI CTAG 2 cut(s) 831, 1005
BfmI CTRYAG 1 cut(s) 244
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 2 cut(s) 397, 581
BisI GCNGC 1 cut(s) 767
BlpI GCTNAGC 1 cut(s) 955
BlsI GCNGC 1 cut(s) 768
Bme1390I CCNGG 6 cut(s) 105, 473, 775, 854, 993, 999
Bme18I GGWCC 2 cut(s) 251, 995
BmgT120I GGNCC 2 cut(s) 251, 995
BmiI GGNNCC 1 cut(s) 997
BmrFI CCNGG 6 cut(s) 105, 473, 775, 854, 993, 999
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 1 cut(s) 403
Bpu1102I GCTNAGC 1 cut(s) 955
BpuEI CTTGAG 2 cut(s) 316, 342
BpuMI CCSGG 3 cut(s) 473, 854, 999
BsaHI GRCGYC 1 cut(s) 892
BsaI GGTCTC 1 cut(s) 783
BsaJI CCNNGG 2 cut(s) 773, 895
BsaWI WCCGGW 1 cut(s) 664
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 998, 1005
Bse1I ACTGG 3 cut(s) 23, 188, 420
BseAI TCCGGA 1 cut(s) 664
BseBI CCWGG 3 cut(s) 105, 775, 993
BseDI CCNNGG 2 cut(s) 773, 895
BseGI GGATG 3 cut(s) 100, 769, 923
BseLI CCNNNNNNNGG 3 cut(s) 194, 998, 1005
BseMII CTCAG 5 cut(s) 60, 159, 711, 802, 969
BseNI ACTGG 3 cut(s) 23, 188, 420
BseRI GAGGAG 2 cut(s) 623, 626
BseXI GCAGC 1 cut(s) 778
BshFI GGCC 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 4 cut(s) 473, 665, 854, 999
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 3 cut(s) 194, 998, 1005
BsmAI GTCTC 4 cut(s) 153, 661, 783, 786
BsmBI CGTCTC 1 cut(s) 661
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 1 cut(s) 991
Bso31I GGTCTC 1 cut(s) 783
Bsp1286I GDGCHC 2 cut(s) 156, 529
Bsp13I TCCGGA 1 cut(s) 664
Bsp143I GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
Bsp1720I GCTNAGC 1 cut(s) 955
BspANI GGCC 1 cut(s) 991
BspCNI CTCAG 5 cut(s) 59, 160, 710, 801, 968
BspEI TCCGGA 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 997
BspPI GGATC 3 cut(s) 115, 364, 1009
BspTNI GGTCTC 1 cut(s) 783
BsrI ACTGG 3 cut(s) 23, 188, 420
BssECI CCNNGG 2 cut(s) 773, 895
BssMI GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
BssNI GRCGYC 1 cut(s) 892
BssSI CACGAG 1 cut(s) 1042
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 3 cut(s) 105, 775, 993
Bst4CI ACNGT 3 cut(s) 685, 821, 1065
BstACI GRCGYC 1 cut(s) 892
BstC8I GCNNGC 3 cut(s) 83, 264, 455
BstDEI CTNAG 7 cut(s) 12, 46, 168, 329, 697, 788, 955
BstDSI CCRYGG 1 cut(s) 895
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 3 cut(s) 100, 769, 923
BstKTI GATC 7 cut(s) 45, 123, 372, 400, 584, 874, 1004
BstMAI GTCTC 4 cut(s) 153, 661, 783, 786
BstMBI GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 3 cut(s) 105, 775, 993
BstNSI RCATGY 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 6 cut(s) 103, 471, 773, 852, 991, 997
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 778
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 3 cut(s) 397, 581, 1001
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 3 cut(s) 397, 581, 1001
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 1 cut(s) 991
BtgI CCRYGG 1 cut(s) 895
BtsCI GGATG 3 cut(s) 100, 769, 923
BtsIMutI CAGTG 2 cut(s) 30, 1070
Cac8I GCNNGC 3 cut(s) 83, 264, 455
Cfr13I GGNCC 2 cut(s) 251, 995
CseI GACGC 2 cut(s) 900, 949
CviAII CATG 8 cut(s) 82, 127, 259, 278, 374, 728, 747, 951
DdeI CTNAG 7 cut(s) 12, 46, 168, 329, 697, 788, 955
DpnI GATC 7 cut(s) 44, 122, 371, 399, 583, 873, 1003
DpnII GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
DraI TTTAAA 1 cut(s) 799
DrdI GACNNNNNNGTC 1 cut(s) 946
DseDI GACNNNNNNGTC 1 cut(s) 946
Eco24I GRGCYC 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 783
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 251, 995
Eco57I CTGAAG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 995
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 103, 773, 991
EcoRV GATATC 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 529
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 8 cut(s) 85, 130, 262, 281, 377, 731, 750, 954
FaqI GGGAC 1 cut(s) 836
FatI CATG 8 cut(s) 81, 126, 258, 277, 373, 727, 746, 950
FauNDI CATATG 1 cut(s) 689
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 1 cut(s) 767
FokI GGATG 3 cut(s) 87, 756, 930
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 2 cut(s) 831, 1005
GluI GCNGC 1 cut(s) 767
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 1 cut(s) 991
HapII CCGG 4 cut(s) 473, 665, 854, 999
HgaI GACGC 2 cut(s) 900, 949
Hin1I GRCGYC 1 cut(s) 892
Hin1II CATG 8 cut(s) 85, 130, 262, 281, 377, 731, 750, 954
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HinfI GANTC 3 cut(s) 62, 786, 1048
HpaI GTTAAC 1 cut(s) 1026
HpaII CCGG 4 cut(s) 473, 665, 854, 999
Hpy166II GTNNAC 1 cut(s) 1026
Hpy188I TCNGA 8 cut(s) 42, 120, 340, 499, 700, 785, 791, 1056
Hpy188III TCNNGA 5 cut(s) 295, 359, 579, 665, 679
Hpy8I GTNNAC 1 cut(s) 1026
Hpy99I CGWCG 1 cut(s) 894
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 3 cut(s) 685, 821, 1065
HpyCH4V TGCA 4 cut(s) 306, 693, 964, 1068
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 7 cut(s) 12, 46, 168, 329, 697, 788, 955
Hsp92I GRCGYC 1 cut(s) 892
Hsp92II CATG 8 cut(s) 85, 130, 262, 281, 377, 731, 750, 954
Kpn2I TCCGGA 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 871
KspAI GTTAAC 1 cut(s) 1026
Kzo9I GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 1 cut(s) 778
MaeI CTAG 2 cut(s) 831, 1005
MaeIII GTNAC 5 cut(s) 25, 238, 422, 671, 815
MalI GATC 7 cut(s) 44, 122, 371, 399, 583, 873, 1003
MboI GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
MboII GAAGA 1 cut(s) 713
MflI RGATCY 3 cut(s) 397, 581, 1001
MhlI GDGCHC 2 cut(s) 156, 529
MluCI AATT 8 cut(s) 109, 232, 351, 403, 500, 867, 902, 973
MlyI GAGTC 1 cut(s) 780
MmeI TCCRAC 1 cut(s) 413
MroI TCCGGA 1 cut(s) 664
MseI TTAA 6 cut(s) 516, 798, 861, 885, 986, 1025
MspI CCGG 4 cut(s) 473, 665, 854, 999
MspR9I CCNGG 6 cut(s) 105, 473, 775, 854, 993, 999
MvaI CCWGG 3 cut(s) 105, 775, 993
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 3 cut(s) 473, 854, 999
NdeI CATATG 1 cut(s) 689
NdeII GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
NlaIII CATG 8 cut(s) 85, 130, 262, 281, 377, 731, 750, 954
NlaIV GGNNCC 1 cut(s) 997
NmeAIII GCCGAG 1 cut(s) 616
NmuCI GTSAC 2 cut(s) 25, 422
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 62, 1048
PflMI CCANNNNNTGG 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 1 cut(s) 768
PleI GAGTC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 780
PpuMI RGGWCCY 1 cut(s) 995
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 3 cut(s) 103, 773, 991
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 3 cut(s) 103, 773, 991
PspN4I GGNNCC 1 cut(s) 997
PspPI GGNCC 2 cut(s) 251, 995
PspPPI RGGWCCY 1 cut(s) 995
PsuI RGATCY 3 cut(s) 397, 581, 1001
SaqAI TTAA 6 cut(s) 516, 798, 861, 885, 986, 1025
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 7 cut(s) 42, 120, 369, 397, 581, 871, 1001
Sau96I GGNCC 2 cut(s) 251, 995
SchI GAGTC 1 cut(s) 780
ScrFI CCNGG 6 cut(s) 105, 473, 775, 854, 993, 999
SduI GDGCHC 2 cut(s) 156, 529
SfaNI GCATC 1 cut(s) 778
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 2 cut(s) 251, 995
SmlI CTYRAG 2 cut(s) 295, 357
SmoI CTYRAG 2 cut(s) 295, 357
SphI GCATGC 1 cut(s) 85
Sse9I AATT 8 cut(s) 109, 232, 351, 403, 500, 867, 902, 973
SspMI CTAG 2 cut(s) 831, 1005
StyD4I CCNGG 6 cut(s) 103, 471, 773, 852, 991, 997
TaaI ACNGT 3 cut(s) 685, 821, 1065
TasI AATT 8 cut(s) 109, 232, 351, 403, 500, 867, 902, 973
TfiI GAWTC 2 cut(s) 62, 1048
Tru1I TTAA 6 cut(s) 516, 798, 861, 885, 986, 1025
Tru9I TTAA 6 cut(s) 516, 798, 861, 885, 986, 1025
TscAI CASTG 2 cut(s) 30, 1070
TseFI GTSAC 2 cut(s) 25, 422
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 2 cut(s) 25, 422
TspDTI ATGAA 6 cut(s) 24, 150, 266, 310, 397, 735
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 30, 1070
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 251, 995
XapI RAATTY 1 cut(s) 902
XceI RCATGY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XspI CTAG 2 cut(s) 831, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.