Rmu_sc0018376.1_g000001

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018376.1
OG0009545
Physical Location & Seq
Forward (+)
754 .. 1257
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018376.1_g000001.1.cds

Sequence Viewer

Length: 504 bp
atgatatcaagatcttttgccgagtattgcgtagtgggttgggacaatctgcccagaacccttctcctctactacaccaacttcgtctcatctccggaaggttacttccagactgtcatatgcaactcagaagactacaaaaacaccacgatcaaccatgacctccactacatttcatgggatacacctccaaagcagcatcccaggtctctcggactccgagactttaaaagaatggttcaaagcaaccgtccatttgctagaaagttcaagcaaaatgccccggtgcttaaaaaaattgatcaacaactgcttaaacgacgccgtggagaatttgcttatggtggatggtgttcggggaaagaaaagacgcagaggtcatgctcaggtttgcagagtgaaaattatggagttttaaggccaggacccggatctaggaggttgaagttcttgttaacaaaactcctttccacgaggaatcatcagaagcaacagtgcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

167

Amino Acids

19.55

Weight (kDa)

10.06

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 428, 435
AgsI TTSAA 3 cut(s) 242, 271, 445
AjnI CCWGG 2 cut(s) 203, 421
Alw26I GTCTC 3 cut(s) 91, 213, 216
AlwI GGATC 1 cut(s) 439
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AspS9I GGNCC 1 cut(s) 425
AsuC2I CCSGG 2 cut(s) 284, 429
AvaII GGWCC 1 cut(s) 425
BauI CACGAG 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 342
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 2 cut(s) 205, 423
BciVI GTATCC 1 cut(s) 175
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 284, 429
BcoDI GTCTC 3 cut(s) 91, 213, 216
BfaI CTAG 2 cut(s) 261, 435
BfuI GTATCC 1 cut(s) 175
BglII AGATCT 1 cut(s) 11
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 4 cut(s) 205, 284, 423, 429
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 4 cut(s) 205, 284, 423, 429
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 385
BpuMI CCSGG 2 cut(s) 284, 429
BsaHI GRCGYC 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 203, 282, 325
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 435
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 2 cut(s) 205, 423
BseDI CCNNGG 3 cut(s) 203, 282, 325
BseGI GGATG 2 cut(s) 199, 353
BseLI CCNNNNNNNGG 2 cut(s) 428, 435
BseMII CTCAG 2 cut(s) 141, 399
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 421
BsiSI CCGG 3 cut(s) 95, 284, 429
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 428, 435
BsmAI GTCTC 3 cut(s) 91, 213, 216
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 421
Bso31I GGTCTC 1 cut(s) 213
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 4 cut(s) 11, 150, 301, 431
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 2 cut(s) 140, 398
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 203, 282, 325
BssMI GATC 4 cut(s) 11, 150, 301, 431
BssNI GRCGYC 1 cut(s) 322
BssSI CACGAG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 472
Bst2UI CCWGG 2 cut(s) 205, 423
Bst4CI ACNGT 3 cut(s) 115, 251, 495
BstACI GRCGYC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 127, 385
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 2 cut(s) 199, 353
BstKTI GATC 4 cut(s) 14, 153, 304, 434
BstMAI GTCTC 3 cut(s) 91, 213, 216
BstMBI GATC 4 cut(s) 11, 150, 301, 431
BstNI CCWGG 2 cut(s) 205, 423
BstSCI CCNGG 4 cut(s) 203, 282, 421, 427
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 11, 431
BstYI RGATCY 2 cut(s) 11, 431
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 421
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 2 cut(s) 199, 353
BtsIMutI CAGTG 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 2 cut(s) 330, 379
CviAII CATG 3 cut(s) 158, 177, 381
CviJI RGCY 1 cut(s) 421
CviKI_1 RGCY 1 cut(s) 421
DdeI CTNAG 2 cut(s) 127, 385
DpnI GATC 4 cut(s) 13, 152, 303, 433
DpnII GATC 4 cut(s) 11, 150, 301, 431
DraI TTTAAA 1 cut(s) 229
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 203, 421
EcoRV GATATC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 3 cut(s) 161, 180, 384
FaiI YATR 7 cut(s) 119, 121, 159, 178, 342, 382, 408
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 157, 176, 380
FauNDI CATATG 1 cut(s) 119
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 2 cut(s) 186, 360
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 261, 435
GluI GCNGC 1 cut(s) 197
HaeIII GGCC 1 cut(s) 421
HapII CCGG 3 cut(s) 95, 284, 429
HgaI GACGC 2 cut(s) 330, 379
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 3 cut(s) 161, 180, 384
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HinfI GANTC 2 cut(s) 216, 478
HpaI GTTAAC 1 cut(s) 456
HpaII CCGG 3 cut(s) 95, 284, 429
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 4 cut(s) 130, 215, 221, 486
Hpy188III TCNNGA 3 cut(s) 9, 95, 109
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 71, 92
HpyCH4III ACNGT 3 cut(s) 115, 251, 495
HpyCH4V TGCA 3 cut(s) 123, 394, 498
HpyF3I CTNAG 2 cut(s) 127, 385
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 3 cut(s) 161, 180, 384
Kpn2I TCCGGA 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 301
KspAI GTTAAC 1 cut(s) 456
Kzo9I GATC 4 cut(s) 11, 150, 301, 431
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 261, 435
MaeIII GTNAC 1 cut(s) 101
MalI GATC 4 cut(s) 13, 152, 303, 433
MboI GATC 4 cut(s) 11, 150, 301, 431
MboII GAAGA 1 cut(s) 143
MflI RGATCY 2 cut(s) 11, 431
MluCI AATT 3 cut(s) 297, 332, 403
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 6 cut(s) 77, 173, 198, 369, 432, 468
MroI TCCGGA 1 cut(s) 94
MseI TTAA 5 cut(s) 228, 291, 315, 416, 455
MspI CCGG 3 cut(s) 95, 284, 429
MspR9I CCNGG 4 cut(s) 205, 284, 423, 429
MvaI CCWGG 2 cut(s) 205, 423
NciI CCSGG 2 cut(s) 284, 429
NdeI CATATG 1 cut(s) 119
NdeII GATC 4 cut(s) 11, 150, 301, 431
NlaIII CATG 3 cut(s) 161, 180, 384
NlaIV GGNNCC 1 cut(s) 427
NmeAIII GCCGAG 1 cut(s) 46
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 203, 421
PspGI CCWGG 2 cut(s) 203, 421
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PsuI RGATCY 2 cut(s) 11, 431
SaqAI TTAA 5 cut(s) 228, 291, 315, 416, 455
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 4 cut(s) 11, 150, 301, 431
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 4 cut(s) 205, 284, 423, 429
SetI ASST 7 cut(s) 103, 165, 190, 209, 380, 391, 443
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 425
Sse9I AATT 3 cut(s) 297, 332, 403
SspMI CTAG 2 cut(s) 261, 435
StyD4I CCNGG 4 cut(s) 203, 282, 421, 427
TaaI ACNGT 3 cut(s) 115, 251, 495
TasI AATT 3 cut(s) 297, 332, 403
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 5 cut(s) 228, 291, 315, 416, 455
Tru9I TTAA 5 cut(s) 228, 291, 315, 416, 455
TscAI CASTG 1 cut(s) 500
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 332
XspI CTAG 2 cut(s) 261, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.