Rh3CG358100

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009545
Physical Location & Seq
Reverse (-)
44194418 .. 44198802
4385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG358100.1

Sequence Viewer

Length: 993 bp
ATGCTCTATGCGCTTTATCATCCTGGAAATTACTATCTGATCCACATGGATTATGAAGCAACGGAGGCAGAGCACAGAGACATAGCTGAGTTTGTGGGTGGAAATCCAGTTTTTGGGGAAGTGGGTAATGTTTGGATTGTGGGAAAACCCAATTTGGTGACCTATAGAGGACCAACCATGCTTGCTACCACTATTCATGCTTTGGCTTTGCTCTTGAGGACCTGCAGATGGGATTGGTTCATCAATCTCAGTGCTTCTGACTACCCTCTAATTACTCAAGATGATCTGATCCATGCCTTTTCTGACTTGCCAAGAGATCTGAATTTCATTCAGCACTCCAGTCACTTGGGTTGGAAACTGAATAAGAGAGGCAAGCCCATTACAATAGACCCAGCACTCTACAGCCTCAATAAATCAGAATTATGGTGGGTTATTAAACAAAGGGCTCTCCCAACTGCTTTCAAGCTATACACAGGTTCAGCTTGGACAATGATATCAAGATCTTTTGCCGAGTATTGCGTAGTGGGTTGGGACAATCTGCCCAGAACCCTCCTCCTCTACTACACCAACTTTGTCTCATCTCCGGAAGGTTACTTCCAGACTGTCATATGCAACTCAGAAGACTACAAAAACACCACGATCAACCATGACCTCCACTACATTTCATGGGATACACCTCCAAAGCAGCATCCCAGGTCTCTCGGACTCAGAGACTTTAAAAGAATGGTTCAAAGCAACCGTCCATTTGCTAGAAAGTTAAAGCAAAATGCCCCGGTGCTTAAAAAAATTGATCAACAACTGCTTAAACGACGCCGTGGAGAATTTGCTTATGGTGGATGGTGTTCGGGGAAAGAAAAGACGCAGAGGTCATGCTCAGGTTTGCAGAGTGAAAATTATGGAGTTTTAAGGCCAGGACCCGGATCTAGGAGGTTGAAGTTCTTGTTAACAAAACTCCTTTCCACGAGGAATCATCAGAAGCAACAGTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

330

Amino Acids

38.22

Weight (kDa)

9.58

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 2 - 242 7.1e-69 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 583
AclWI GGATC 3 cut(s) 34, 283, 928
AcsI RAATTY 2 cut(s) 322, 821
AcyI GRCGYC 1 cut(s) 811
AfiI CCNNNNNNNGG 4 cut(s) 113, 228, 917, 924
AgsI TTSAA 3 cut(s) 463, 731, 934
AjnI CCWGG 3 cut(s) 22, 692, 910
AluBI AGCT 3 cut(s) 86, 466, 482
AluI AGCT 3 cut(s) 86, 466, 482
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 4 cut(s) 72, 580, 702, 705
AlwI GGATC 3 cut(s) 34, 283, 928
Aor13HI TCCGGA 1 cut(s) 583
AoxI GGCC 1 cut(s) 908
ApeKI GCWGC 1 cut(s) 685
ApoI RAATTY 2 cut(s) 322, 821
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 170, 219, 914
AsuC2I CCSGG 2 cut(s) 773, 918
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 3 cut(s) 170, 219, 914
BanII GRGCYC 1 cut(s) 448
BauI CACGAG 1 cut(s) 961
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 697
BccI CCATC 2 cut(s) 222, 831
BceAI ACGGC 1 cut(s) 798
BciT130I CCWGG 3 cut(s) 24, 694, 912
BciVI GTATCC 1 cut(s) 664
BclI TGATCA 1 cut(s) 790
BcnI CCSGG 2 cut(s) 773, 918
BcoDI GTCTC 4 cut(s) 72, 580, 702, 705
BfaI CTAG 2 cut(s) 750, 924
BfmI CTRYAG 3 cut(s) 163, 223, 400
BfuAI ACCTGC 1 cut(s) 230
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 2 cut(s) 316, 500
BisI GCNGC 1 cut(s) 686
BlsI GCNGC 1 cut(s) 687
Bme1390I CCNGG 5 cut(s) 24, 694, 773, 912, 918
Bme18I GGWCC 3 cut(s) 170, 219, 914
BmgT120I GGNCC 3 cut(s) 170, 219, 914
BmiI GGNNCC 1 cut(s) 916
BmrFI CCNGG 5 cut(s) 24, 694, 773, 912, 918
BmsI GCATC 1 cut(s) 697
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 235, 261
BpuMI CCSGG 2 cut(s) 773, 918
BsaHI GRCGYC 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 692, 771, 814
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 228, 917, 924
Bse1I ACTGG 2 cut(s) 107, 339
BseAI TCCGGA 1 cut(s) 583
BseBI CCWGG 3 cut(s) 24, 694, 912
BseDI CCNNGG 3 cut(s) 692, 771, 814
BseGI GGATG 3 cut(s) 19, 688, 842
BseLI CCNNNNNNNGG 4 cut(s) 113, 228, 917, 924
BseMII CTCAG 5 cut(s) 78, 262, 630, 721, 888
BseNI ACTGG 2 cut(s) 107, 339
BseRI GAGGAG 2 cut(s) 542, 545
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 391
BshFI GGCC 1 cut(s) 910
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 3 cut(s) 584, 773, 918
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 4 cut(s) 113, 228, 917, 924
BsmAI GTCTC 4 cut(s) 72, 580, 702, 705
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 1 cut(s) 910
Bso31I GGTCTC 1 cut(s) 702
Bsp1286I GDGCHC 2 cut(s) 75, 448
Bsp13I TCCGGA 1 cut(s) 583
Bsp143I GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
BspANI GGCC 1 cut(s) 910
BspCNI CTCAG 5 cut(s) 79, 261, 629, 720, 887
BspEI TCCGGA 1 cut(s) 583
BspLI GGNNCC 1 cut(s) 916
BspMAI CTGCAG 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 3 cut(s) 34, 283, 928
BspTNI GGTCTC 1 cut(s) 702
BsrI ACTGG 2 cut(s) 107, 339
BssECI CCNNGG 3 cut(s) 692, 771, 814
BssMI GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
BssNI GRCGYC 1 cut(s) 811
BssSI CACGAG 1 cut(s) 961
Bst2BI CACGAG 1 cut(s) 961
Bst2UI CCWGG 3 cut(s) 24, 694, 912
Bst4CI ACNGT 3 cut(s) 604, 740, 984
BstACI GRCGYC 1 cut(s) 811
BstC8I GCNNGC 2 cut(s) 183, 374
BstDEI CTNAG 5 cut(s) 87, 248, 616, 707, 874
BstDSI CCRYGG 1 cut(s) 814
BstEII GGTNACC 1 cut(s) 157
BstF5I GGATG 3 cut(s) 19, 688, 842
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 8 cut(s) 42, 286, 291, 319, 503, 642, 793, 923
BstMAI GTCTC 4 cut(s) 72, 580, 702, 705
BstMBI GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
BstMWI GCNNNNNNNGC 2 cut(s) 10, 65
BstNI CCWGG 3 cut(s) 24, 694, 912
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 5 cut(s) 22, 692, 771, 910, 916
BstSFI CTRYAG 3 cut(s) 163, 223, 400
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 3 cut(s) 316, 500, 920
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 3 cut(s) 316, 500, 920
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 1 cut(s) 910
BtgI CCRYGG 1 cut(s) 814
BtsCI GGATG 3 cut(s) 19, 688, 842
BtsIMutI CAGTG 2 cut(s) 256, 989
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 183, 374
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 3 cut(s) 170, 219, 914
CseI GACGC 2 cut(s) 819, 868
CviAII CATG 7 cut(s) 46, 178, 197, 293, 647, 666, 870
CviJI RGCY 8 cut(s) 86, 206, 376, 405, 446, 466, 482, 910
CviKI_1 RGCY 8 cut(s) 86, 206, 376, 405, 446, 466, 482, 910
DdeI CTNAG 5 cut(s) 87, 248, 616, 707, 874
DpnI GATC 8 cut(s) 41, 285, 290, 318, 502, 641, 792, 922
DpnII GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
DraI TTTAAA 1 cut(s) 718
DrdI GACNNNNNNGTC 1 cut(s) 865
DseDI GACNNNNNNGTC 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 702
Eco32I GATATC 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 170, 219, 914
Eco91I GGTNACC 1 cut(s) 157
EcoO109I RGGNCCY 2 cut(s) 219, 914
EcoO65I GGTNACC 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 22, 692, 910
EcoRV GATATC 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 448
FaeI CATG 7 cut(s) 49, 181, 200, 296, 650, 669, 873
FaqI GGGAC 1 cut(s) 545
FatI CATG 7 cut(s) 45, 177, 196, 292, 646, 665, 869
FauNDI CATATG 1 cut(s) 608
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 1 cut(s) 686
FokI GGATG 3 cut(s) 6, 675, 849
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 686
FspBI CTAG 2 cut(s) 750, 924
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 686
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 910
HapII CCGG 3 cut(s) 584, 773, 918
HgaI GACGC 2 cut(s) 819, 868
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 811
Hin1II CATG 7 cut(s) 49, 181, 200, 296, 650, 669, 873
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HinfI GANTC 2 cut(s) 705, 967
HpaI GTTAAC 1 cut(s) 945
HpaII CCGG 3 cut(s) 584, 773, 918
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 945
Hpy188III TCNNGA 5 cut(s) 214, 278, 498, 584, 598
Hpy8I GTNNAC 1 cut(s) 945
Hpy99I CGWCG 1 cut(s) 813
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 3 cut(s) 604, 740, 984
HpyCH4V TGCA 4 cut(s) 225, 612, 883, 987
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 65
HpyF3I CTNAG 5 cut(s) 87, 248, 616, 707, 874
Hsp92I GRCGYC 1 cut(s) 811
Hsp92II CATG 7 cut(s) 49, 181, 200, 296, 650, 669, 873
HspAI GCGC 1 cut(s) 11
Kpn2I TCCGGA 1 cut(s) 583
Ksp22I TGATCA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 945
Kzo9I GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 1 cut(s) 697
MaeI CTAG 2 cut(s) 750, 924
MaeIII GTNAC 3 cut(s) 157, 341, 590
MalI GATC 8 cut(s) 41, 285, 290, 318, 502, 641, 792, 922
MboI GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
MboII GAAGA 1 cut(s) 632
MflI RGATCY 3 cut(s) 316, 500, 920
MhlI GDGCHC 2 cut(s) 75, 448
MluCI AATT 8 cut(s) 28, 151, 270, 322, 419, 786, 821, 892
MlyI GAGTC 1 cut(s) 699
MmeI TCCRAC 1 cut(s) 332
MroI TCCGGA 1 cut(s) 583
MseI TTAA 7 cut(s) 435, 717, 758, 780, 804, 905, 944
MspI CCGG 3 cut(s) 584, 773, 918
MspR9I CCNGG 5 cut(s) 24, 694, 773, 912, 918
MvaI CCWGG 3 cut(s) 24, 694, 912
MwoI GCNNNNNNNGC 2 cut(s) 10, 65
NciI CCSGG 2 cut(s) 773, 918
NdeI CATATG 1 cut(s) 608
NdeII GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
NlaIII CATG 7 cut(s) 49, 181, 200, 296, 650, 669, 873
NlaIV GGNNCC 1 cut(s) 916
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 2 cut(s) 157, 341
PfeI GAWTC 1 cut(s) 967
PflMI CCANNNNNTGG 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 1 cut(s) 687
PleI GAGTC 1 cut(s) 699
PpsI GAGTC 1 cut(s) 699
PpuMI RGGWCCY 2 cut(s) 219, 914
Psp5II RGGWCCY 2 cut(s) 219, 914
Psp6I CCWGG 3 cut(s) 22, 692, 910
PspEI GGTNACC 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 22, 692, 910
PspN4I GGNNCC 1 cut(s) 916
PspPI GGNCC 3 cut(s) 170, 219, 914
PspPPI RGGWCCY 2 cut(s) 219, 914
PstI CTGCAG 1 cut(s) 227
PsuI RGATCY 3 cut(s) 316, 500, 920
SaqAI TTAA 7 cut(s) 435, 717, 758, 780, 804, 905, 944
SatI GCNGC 1 cut(s) 686
Sau3AI GATC 8 cut(s) 39, 283, 288, 316, 500, 639, 790, 920
Sau96I GGNCC 3 cut(s) 170, 219, 914
SchI GAGTC 1 cut(s) 699
ScrFI CCNGG 5 cut(s) 24, 694, 773, 912, 918
SduI GDGCHC 2 cut(s) 75, 448
SfaNI GCATC 1 cut(s) 697
SfcI CTRYAG 3 cut(s) 163, 223, 400
SinI GGWCC 3 cut(s) 170, 219, 914
SmlI CTYRAG 2 cut(s) 214, 276
SmoI CTYRAG 2 cut(s) 214, 276
Sse9I AATT 8 cut(s) 28, 151, 270, 322, 419, 786, 821, 892
SspMI CTAG 2 cut(s) 750, 924
StyD4I CCNGG 5 cut(s) 22, 692, 771, 910, 916
TaaI ACNGT 3 cut(s) 604, 740, 984
TasI AATT 8 cut(s) 28, 151, 270, 322, 419, 786, 821, 892
TfiI GAWTC 1 cut(s) 967
Tru1I TTAA 7 cut(s) 435, 717, 758, 780, 804, 905, 944
Tru9I TTAA 7 cut(s) 435, 717, 758, 780, 804, 905, 944
TscAI CASTG 2 cut(s) 256, 989
TseFI GTSAC 2 cut(s) 157, 341
TseI GCWGC 1 cut(s) 685
Tsp45I GTSAC 2 cut(s) 157, 341
TspDTI ATGAA 5 cut(s) 69, 185, 229, 316, 654
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 2 cut(s) 256, 989
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 3 cut(s) 170, 219, 914
XapI RAATTY 2 cut(s) 322, 821
XspI CTAG 2 cut(s) 750, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.