Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009545

Physical Location & Seq

Genomic Coordinates Forward (+)

2297406 .. 2300680

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGTATCAAAGCATTTGCGCTATCTTTCATGCTAATTTCAATTATTTTCTCTTTTGTATACATTCCAGCTAGATTAACAATACCCATCCACAATGTCAGGCCTATAATAAATTACTTCAACTTACCCAAATCCAGCAACACCACCACCAAGCCATATCCAGTCACATTTTCCTATCTAATATCAGCATCCAAGGGTGATGCTCTGAAGCTCAAGCGCTTGCTCTATGCCCTCTACCATCCTGGAAATTACTATCTGATTCACATGGACTATGCAGCCCCAGAGGCTGAGCACAGGGACATTGCTGACTTTGTGGCTGGAGATCCAGTTTTTGGGCAAGTGGGTAATGTTTGGGTGCTGGGAAAATCCAACTTGGTCACATATAGAGGGCCCACAATGCTGGCTACCACTCTTCATGCATTGGCTCTGCTCTTGAGGACTTGCAAATGGGATTGGTTTATCAATCTCAGTGCTTCTGATTATCCTCTAATCACTCAAGATGATCTGATGCATTCATTTTCTGATTTGCCAAGAGATCTCAATTTCATACAGCACAGTAGTCGCTTGGGGTGGAAGCTGAATAAAAGAGGGAAGCCAGTGATAATAGACCCAGGACTCTACAGCCTGAATAAATCAGAATTGTGGTGGGCTATTAAACAGAGGGAGCTCCCAACAGCTTTCAAGCTGTACACAGGTTCAGCGTGGACAATTCTCTCAAGATCTTTTGCCGAATATTGCATAGTGGGGTGGGACAATTTGCCAAGGACTCTCCTCCTCTACTACACCAACTTTGTGTCCTCACCTGAAGGCTACTTCCAGACAGTCATATGCAACTCCCAAGACTACAAGAACACCACTGTCAACCATGACCTCCACTACATTACATGGGACACGCCTCCAAAGCAACATCCCAGGTCTCTAGGACTCAGAGATTTTCCAAGAATGATTCTAAGTAACCGTCCTTTTGCTCGAAAGTTCAAGAAAAATGTACCTGTTCTTAACAAAATCGATCGCGAAGTTCTTAAACGACACCGTGGACAGTTTTCTTATGGGGGATGGTGTTCTGGGAGTAGAGGGCAGACGCAGAAGATGTGTTCAGGTTTGCAGGGTGAAAACTATGGTGGGTTAAGGCCCGGACCGGGGGCTAAGAGGTTGAAATCTTTGTTAAAAAAACTCCTCTCCACAAGGAAGTTTCAGAAGCAACAATGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

405

Amino Acids

46.32

Weight (kDa)

9.85

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03690 AT3G03690
fragaria_vesca	FvH4_6g14740 FvH4_6g14740 FvH4_6g14740
malus_domestica	MD12G1012100.v1.1 MD14G1009700.v1.1
prunus_persica	Prupe.7G016000_v2.0.a1
pyrus_communis	pycom12g00940 pycom14g00820 pycom14g00830
rosa_chinensis	RchiOBHm_Chr3g0495981
rosa_laevigata	RLG00000022573
rosa_multiflora	Rmu_sc0000334.1_g000056 Rmu_sc0018376.1_g000001
rosa_roxburghii	Rroxscaffold_6G00389660
rosa_rugosa	Rorug03G0278700
rosa_samantha	Rh3AG325500 Rh3BG362100 Rh3CG358100 Rh3DG361400
rosa_wichuraiana	Rw3G028460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	1014
AclWI	GGATC	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	227, 825
AfaI	GTAC	2 cut(s)	689, 990
AfeI	AGCGCT	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	332, 1139, 1140
AgsI	TTSAA	5 cut(s)	42, 121, 682, 979, 1156
AjnI	CCWGG	3 cut(s)	241, 610, 911
AluBI	AGCT	6 cut(s)	71, 211, 577, 667, 677, 685
AluI	AGCT	6 cut(s)	71, 211, 577, 667, 677, 685
Alw21I	GWGCWC	2 cut(s)	294, 669
Alw26I	GTCTC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor51HI	AGCGCT	1 cut(s)	218
AoxI	GGCC	3 cut(s)	101, 389, 1130
ApaI	GGGCCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	22, 219
AspS9I	GGNCC	4 cut(s)	389, 390, 1131, 1136
AsuC2I	CCSGG	2 cut(s)	1134, 1140
AsuHPI	GGTGA	3 cut(s)	209, 792, 1121
AvaII	GGWCC	1 cut(s)	1136
BaeGI	GKGCMC	1 cut(s)	393
BanII	GRGCYC	2 cut(s)	393, 669
Bbv12I	GWGCWC	2 cut(s)	294, 669
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	3 cut(s)	95, 246, 1050
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	3 cut(s)	243, 612, 913
BcnI	CCSGG	2 cut(s)	1134, 1140
BcoDI	GTCTC	1 cut(s)	921
BfaI	CTAG	2 cut(s)	72, 920
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	284
BglII	AGATCT	2 cut(s)	535, 719
BisI	GCNGC	1 cut(s)	276
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	5 cut(s)	243, 612, 913, 1134, 1140
Bme18I	GGWCC	1 cut(s)	1136
BmgT120I	GGNCC	4 cut(s)	389, 390, 1131, 1136
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	5 cut(s)	243, 612, 913, 1134, 1140
BmsI	GCATC	3 cut(s)	190, 197, 498
BpmI	CTGGAG	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	4 cut(s)	197, 454, 480, 700
BpuMI	CCSGG	2 cut(s)	1134, 1140
Bsa29I	ATCGAT	1 cut(s)	1008
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	6 cut(s)	192, 610, 761, 911, 1033, 1139
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 1139, 1140
Bse1I	ACTGG	3 cut(s)	161, 326, 596
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	3 cut(s)	243, 612, 913
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	6 cut(s)	192, 610, 761, 911, 1033, 1139
BseGI	GGATG	5 cut(s)	87, 188, 238, 907, 1061
BseLI	CCNNNNNNNGG	3 cut(s)	332, 1139, 1140
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	279, 481, 940
BseNI	ACTGG	3 cut(s)	161, 326, 596
BseRI	GAGGAG	3 cut(s)	761, 764, 1166
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	1014
Bsh1285I	CGRYCG	1 cut(s)	1012
BshFI	GGCC	3 cut(s)	103, 391, 1132
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	1012
BsiHKAI	GWGCWC	2 cut(s)	294, 669
BsiSI	CCGG	2 cut(s)	1134, 1139
BslFI	GGGAC	3 cut(s)	311, 764, 902
BslI	CCNNNNNNNGG	3 cut(s)	332, 1139, 1140
BsmAI	GTCTC	1 cut(s)	921
BsmFI	GGGAC	3 cut(s)	311, 764, 902
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	103, 391, 1132
Bso31I	GGTCTC	1 cut(s)	921
Bsp120I	GGGCCC	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	294, 393, 669
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	322, 502, 535, 719, 1009
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp68I	TCGCGA	1 cut(s)	1014
BspANI	GGCC	3 cut(s)	103, 391, 1132
BspCNI	CTCAG	3 cut(s)	280, 480, 939
BspDI	ATCGAT	1 cut(s)	1008
BspFNI	CGCG	1 cut(s)	1014
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	3 cut(s)	161, 326, 596
BssECI	CCNNGG	6 cut(s)	192, 610, 761, 911, 1033, 1139
BssMI	GATC	5 cut(s)	322, 502, 535, 719, 1009
BssNAI	GTATAC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	192, 761
Bst1107I	GTATAC	1 cut(s)	61
Bst2UI	CCWGG	3 cut(s)	243, 612, 913
Bst4CI	ACNGT	6 cut(s)	557, 823, 859, 959, 1034, 1041
Bst6I	CTCTTC	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	221, 402
BstDEI	CTNAG	5 cut(s)	288, 467, 926, 950, 1146
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	5 cut(s)	87, 188, 238, 907, 1061
BstFNI	CGCG	1 cut(s)	1014
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	2 cut(s)	22, 219
BstKTI	GATC	5 cut(s)	325, 505, 538, 722, 1012
BstMAI	GTCTC	1 cut(s)	921
BstMBI	GATC	5 cut(s)	322, 502, 535, 719, 1009
BstMCI	CGRYCG	1 cut(s)	1012
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 397, 901
BstNI	CCWGG	3 cut(s)	243, 612, 913
BstSCI	CCNGG	5 cut(s)	241, 610, 911, 1132, 1138
BstSFI	CTRYAG	1 cut(s)	619
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	1014
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	3 cut(s)	322, 535, 719
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	3 cut(s)	322, 535, 719
BstZ17I	GTATAC	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	1008
BsuRI	GGCC	3 cut(s)	103, 391, 1132
BsuTUI	ATCGAT	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	1033
BtsCI	GGATG	5 cut(s)	87, 188, 238, 907, 1061
BtsIMutI	CAGTG	3 cut(s)	475, 603, 855
BtuMI	TCGCGA	1 cut(s)	1014
Cac8I	GCNNGC	2 cut(s)	221, 402
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	2 cut(s)	22, 219
Cfr13I	GGNCC	4 cut(s)	389, 390, 1131, 1136
ClaI	ATCGAT	1 cut(s)	1008
CpoI	CGGWCCG	1 cut(s)	1136
CseI	GACGC	1 cut(s)	1090
Csp6I	GTAC	2 cut(s)	688, 989
CspI	CGGWCCG	1 cut(s)	1136
CviAII	CATG	5 cut(s)	31, 265, 416, 866, 885
CviQI	GTAC	2 cut(s)	688, 989
DdeI	CTNAG	5 cut(s)	288, 467, 926, 950, 1146
DpnI	GATC	5 cut(s)	324, 504, 537, 721, 1011
DpnII	GATC	5 cut(s)	322, 502, 535, 719, 1009
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	2 cut(s)	192, 761
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	393, 669
Eco31I	GGTCTC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	1136
Eco47III	AGCGCT	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	227, 825
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	3 cut(s)	241, 610, 911
EcoT14I	CCWWGG	2 cut(s)	192, 761
EcoT22I	ATGCAT	2 cut(s)	421, 513
EcoT38I	GRGCYC	2 cut(s)	393, 669
ErhI	CCWWGG	2 cut(s)	192, 761
FaeI	CATG	5 cut(s)	34, 268, 419, 869, 888
FaqI	GGGAC	3 cut(s)	311, 764, 902
FatI	CATG	5 cut(s)	30, 264, 415, 865, 884
FauNDI	CATATG	1 cut(s)	827
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	5 cut(s)	74, 175, 225, 894, 1068
FriOI	GRGCYC	2 cut(s)	393, 669
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	72, 920
GlaI	GCGC	2 cut(s)	21, 218
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	103, 391, 1132
HapII	CCGG	2 cut(s)	1134, 1139
HgaI	GACGC	1 cut(s)	1090
HhaI	GCGC	2 cut(s)	22, 219
Hin1II	CATG	5 cut(s)	34, 268, 419, 869, 888
Hin6I	GCGC	2 cut(s)	20, 217
HinP1I	GCGC	2 cut(s)	20, 217
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HinfI	GANTC	5 cut(s)	259, 615, 766, 924, 946
HpaII	CCGG	2 cut(s)	1134, 1139
HphI	GGTGA	3 cut(s)	209, 792, 1121
Hpy166II	GTNNAC	5 cut(s)	61, 690, 705, 862, 1037
Hpy188I	TCNGA	8 cut(s)	207, 258, 478, 507, 523, 637, 929, 1197
Hpy188III	TCNNGA	6 cut(s)	433, 497, 717, 817, 979, 1013
Hpy8I	GTNNAC	5 cut(s)	61, 690, 705, 862, 1037
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	6 cut(s)	557, 823, 859, 959, 1034, 1041
HpyCH4V	TGCA	8 cut(s)	275, 419, 444, 511, 738, 831, 1105, 1209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 397, 901
HpyF3I	CTNAG	5 cut(s)	288, 467, 926, 950, 1146
Hsp92II	CATG	5 cut(s)	34, 268, 419, 869, 888
HspAI	GCGC	2 cut(s)	20, 217
Kzo9I	GATC	5 cut(s)	322, 502, 535, 719, 1009
LmnI	GCTCC	2 cut(s)	664, 672
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	3 cut(s)	190, 197, 498
MaeI	CTAG	2 cut(s)	72, 920
MaeIII	GTNAC	3 cut(s)	163, 376, 953
MalI	GATC	5 cut(s)	324, 504, 537, 721, 1011
MboI	GATC	5 cut(s)	322, 502, 535, 719, 1009
MboII	GAAGA	2 cut(s)	404, 1099
MflI	RGATCY	3 cut(s)	322, 535, 719
MhlI	GDGCHC	3 cut(s)	294, 393, 669
MluCI	AATT	8 cut(s)	36, 42, 112, 247, 541, 638, 708, 754
MlyI	GAGTC	3 cut(s)	609, 760, 918
MmeI	TCCRAC	1 cut(s)	393
Mph1103I	ATGCAT	2 cut(s)	421, 513
MseI	TTAA	6 cut(s)	77, 654, 999, 1023, 1127, 1166
MspI	CCGG	2 cut(s)	1134, 1139
MspR9I	CCNGG	5 cut(s)	243, 612, 913, 1134, 1140
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	243, 612, 913
MvnI	CGCG	1 cut(s)	1014
MwoI	GCNNNNNNNGC	3 cut(s)	284, 397, 901
NciI	CCSGG	2 cut(s)	1134, 1140
NdeI	CATATG	1 cut(s)	827
NdeII	GATC	5 cut(s)	322, 502, 535, 719, 1009
NlaIII	CATG	5 cut(s)	34, 268, 419, 869, 888
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	2 cut(s)	163, 376
NruI	TCGCGA	1 cut(s)	1014
NsiI	ATGCAT	2 cut(s)	421, 513
PceI	AGGCCT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	259, 946
PflMI	CCANNNNNTGG	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	277
Ple19I	CGATCG	1 cut(s)	1012
PleI	GAGTC	3 cut(s)	609, 760, 918
PpsI	GAGTC	3 cut(s)	609, 760, 918
Psp124BI	GAGCTC	1 cut(s)	669
Psp6I	CCWGG	3 cut(s)	241, 610, 911
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	3 cut(s)	241, 610, 911
PspN4I	GGNNCC	1 cut(s)	391
PspOMI	GGGCCC	1 cut(s)	389
PspPI	GGNCC	4 cut(s)	389, 390, 1131, 1136
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	3 cut(s)	322, 535, 719
PvuI	CGATCG	1 cut(s)	1012
RruI	TCGCGA	1 cut(s)	1014
RsaI	GTAC	2 cut(s)	689, 990
RsaNI	GTAC	2 cut(s)	688, 989
Rsr2I	CGGWCCG	1 cut(s)	1136
RsrII	CGGWCCG	1 cut(s)	1136
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	6 cut(s)	77, 654, 999, 1023, 1127, 1166
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	5 cut(s)	322, 502, 535, 719, 1009
Sau96I	GGNCC	4 cut(s)	389, 390, 1131, 1136
SchI	GAGTC	3 cut(s)	609, 760, 918
ScrFI	CCNGG	5 cut(s)	243, 612, 913, 1134, 1140
SduI	GDGCHC	3 cut(s)	294, 393, 669
SfaNI	GCATC	3 cut(s)	190, 197, 498
SfcI	CTRYAG	1 cut(s)	619
SinI	GGWCC	1 cut(s)	1136
SmlI	CTYRAG	4 cut(s)	212, 433, 495, 715
SmoI	CTYRAG	4 cut(s)	212, 433, 495, 715
Sse9I	AATT	8 cut(s)	36, 42, 112, 247, 541, 638, 708, 754
SseBI	AGGCCT	1 cut(s)	103
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	2 cut(s)	72, 920
SstI	GAGCTC	1 cut(s)	669
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	5 cut(s)	241, 610, 911, 1132, 1138
StyI	CCWWGG	2 cut(s)	192, 761
TaaI	ACNGT	6 cut(s)	557, 823, 859, 959, 1034, 1041
TaqI	TCGA	2 cut(s)	970, 1008
TasI	AATT	8 cut(s)	36, 42, 112, 247, 541, 638, 708, 754
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	259, 946
Tru1I	TTAA	6 cut(s)	77, 654, 999, 1023, 1127, 1166
Tru9I	TTAA	6 cut(s)	77, 654, 999, 1023, 1127, 1166
TscAI	CASTG	3 cut(s)	475, 603, 862
TseFI	GTSAC	2 cut(s)	163, 376
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	163, 376
TspDTI	ATGAA	4 cut(s)	19, 404, 504, 535
TspRI	CASTG	3 cut(s)	475, 603, 862
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	1136
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	2 cut(s)	72, 920
Zsp2I	ATGCAT	2 cut(s)	421, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.