FvH4_6g15180

Floral homeotic protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
9423257 .. 9426592
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15180.t1

Sequence Viewer

Length: 1329 bp
ATGCTAGATCTCAACCTCAACTTCTTCACCTCCGATATGGACACCTCCTCCAACGACGACTCCTCCTCCTCCACCACTCTCAACTTCCTCGACTTCCAATCCGACGTCGCCGCCGAGCCCGATCATCACCCCTCCTCCGACTCCCGCACCATCCAGCTCTTCCCCCCTCCGGCCAAGCAGTGGCTCGGCCTCTCCTCCGCCTCCTCCACAACCTATCGTTACCGCGCTTCTCCTCCTCCTCCTCCTCCGCCGCCGCAAGAGCAGATGATCGCGCCTCTCTCGGTCAAGAAGAGCCGCCGCGGACCGAGGTCCCGGAGCTCCCAGTATCGCGGCGTCACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCATATTTGGGATAATGGGAAGCAGGTGTACTTGGGTGGGTTTGATACTGCGCATTCTGCGGCTAGAGCTTATGATCGAGCTGCAATCAAGTTCCGTGGAACCGAGGCTGATATTAATTTCAGTGTTGGTGATTATGATGAAGATATTAAGCAGATGAGTAATTATACAAAGGAAGAGTTTGTGCAAATTCTGCGTCGCCAGAGCACCGGATTCGCCAGAGGAAGCTCGAAATACAGGGGAGTCACGCTGCACAAATGTGGCCGCTGGGAAGCTCGTATGGGTCAGTTGCTGGGCAAGAAGTATATATACCTTGGCCTATTTGATACCGAGATTGAAGCTGCAAGAGCGTATGACCAAGCTGCCATCAAATGCCATGGAAGCGAAGCGGTCACCAACTTTAATCCAATCTTATATGATGGGGAGATAGAGGCTGAGCCCAACAATGCAGGCATGGATGGTAGTCTTGATCTAAACTTGGGAATTGCTCCCCCCTTGGCTTCTGAATGTCCAAATGAGAACATCAACTTGAGCAGTTTTCCTTTTCCGCTAGGCAGAAATGACCTGCCTATTCACATGAGATCAAGGAATGAGAACTCTGTTCCAGGATTTCCAGCAACTATGAGGACTCAATTACCTCGTGGCTTAATGGTGGCATCTGCGGAGCCTCCTCTAACGAGCAACATGAACTCCAACTTCTTTCCCATACATATGGAAAGAGCAACGGAGAAGAGTATGGATGCTAACTCCTTCCGTAACTGGGCATGGCAAATGCAAGGCCATAATGATGGAGCAACTCCAATGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCAACACCACCATCATCAGCTGCTGTCCCTCCGCTTCATTTTCCCAACACATCATTTCTCCAGCGCCACTTTTCCCCATCGTTCACCAACAGCACACCCCATTTCTATTGCAGGAGCTGA

Protein Analysis

443

Amino Acids

49.16

Weight (kDa)

6.87

Isoelectric Point (pI)

60.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 108 - 156 7.3e-11 AP2 domain
AP2 PF00847 199 - 249 2.3e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
AatII GACGTC 1 cut(s) 108
Acc16I TGCGCA 1 cut(s) 420
Acc36I ACCTGC 2 cut(s) 382, 939
AccB7I CCANNNNNTGG 1 cut(s) 180
AccII CGCG 4 cut(s) 225, 272, 300, 330
AcoI YGGCCR 3 cut(s) 171, 355, 628
AcsI RAATTY 1 cut(s) 555
AcyI GRCGYC 2 cut(s) 105, 333
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 4 cut(s) 169, 180, 360, 1126
AgsI TTSAA 2 cut(s) 704, 1212
AjnI CCWGG 1 cut(s) 970
AleI CACNNNNGTG 1 cut(s) 624
Alw21I GWGCWC 2 cut(s) 320, 575
AlwNI CAGNNNCTG 3 cut(s) 658, 1232, 1326
AoxI GGCC 6 cut(s) 171, 187, 355, 628, 682, 1144
ApeKI GCWGC 7 cut(s) 449, 616, 707, 728, 1184, 1187, 1229
ApoI RAATTY 1 cut(s) 555
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 4 cut(s) 227, 274, 421, 1275
AspS9I GGNCC 3 cut(s) 302, 309, 351
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 5 cut(s) 19, 119, 509, 751, 1285
AvaII GGWCC 3 cut(s) 302, 309, 351
BanII GRGCYC 3 cut(s) 120, 320, 807
BarI GAAGNNNNNNTAC 4 cut(s) 380, 412, 659, 691
BauI CACGAG 1 cut(s) 1005
Bbv12I GWGCWC 2 cut(s) 320, 575
BbvI GCAGC 7 cut(s) 436, 603, 694, 715, 1171, 1199, 1216
BccI CCATC 7 cut(s) 158, 740, 779, 818, 1148, 1228, 1294
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 1 cut(s) 972
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 3 cut(s) 5, 432, 917
BfmI CTRYAG 1 cut(s) 1185
BfoI RGCGCY 1 cut(s) 1276
BfuAI ACCTGC 2 cut(s) 382, 939
BglII AGATCT 1 cut(s) 7
BlpI GCTNAGC 1 cut(s) 801
Bme1390I CCNGG 2 cut(s) 313, 972
Bme18I GGWCC 3 cut(s) 302, 309, 351
BmgT120I GGNCC 3 cut(s) 302, 309, 351
BmiI GGNNCC 3 cut(s) 311, 469, 1032
BmrFI CCNGG 2 cut(s) 313, 972
BmrI ACTGGG 2 cut(s) 316, 1135
BmsI GCATC 3 cut(s) 1031, 1096, 1199
BmuI ACTGGG 2 cut(s) 316, 1135
BoxI GACNNNNGTC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 1253
Bpu1102I GCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 916
BpuMI CCSGG 1 cut(s) 313
BsaHI GRCGYC 2 cut(s) 105, 333
BsaJI CCNNGG 7 cut(s) 298, 305, 463, 471, 679, 742, 861
BsaWI WCCGGW 2 cut(s) 345, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 180, 360, 1126
Bse118I RCCGGY 2 cut(s) 353, 357
Bse1I ACTGG 2 cut(s) 322, 1130
BseBI CCWGG 1 cut(s) 972
BseDI CCNNGG 7 cut(s) 298, 305, 463, 471, 679, 742, 861
BseGI GGATG 3 cut(s) 150, 829, 1111
BseLI CCNNNNNNNGG 4 cut(s) 169, 180, 360, 1126
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 2 cut(s) 322, 1130
BseX3I CGGCCG 1 cut(s) 355
BseXI GCAGC 7 cut(s) 436, 603, 694, 715, 1171, 1199, 1216
BseYI CCCAGC 2 cut(s) 633, 658
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 4 cut(s) 225, 272, 300, 330
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 6 cut(s) 173, 189, 357, 630, 684, 1146
BsiEI CGRYCG 1 cut(s) 358
BsiHKAI GWGCWC 2 cut(s) 320, 575
BsiSI CCGG 6 cut(s) 170, 313, 346, 354, 358, 576
BslFI GGGAC 2 cut(s) 295, 1220
BslI CCNNNNNNNGG 4 cut(s) 169, 180, 360, 1126
BsmFI GGGAC 2 cut(s) 295, 1220
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 6 cut(s) 173, 189, 357, 630, 684, 1146
Bsp1286I GDGCHC 4 cut(s) 120, 320, 575, 807
Bsp143I GATC 6 cut(s) 7, 121, 267, 442, 835, 947
Bsp1720I GCTNAGC 1 cut(s) 801
Bsp19I CCATGG 1 cut(s) 742
BspANI GGCC 6 cut(s) 173, 189, 357, 630, 684, 1146
BspCNI CTCAG 1 cut(s) 793
BspFNI CGCG 4 cut(s) 225, 272, 300, 330
BspLI GGNNCC 3 cut(s) 311, 469, 1032
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 2 cut(s) 382, 939
BspQI GCTCTTC 2 cut(s) 164, 284
BsrFI RCCGGY 2 cut(s) 353, 357
BsrI ACTGG 2 cut(s) 322, 1130
BssAI RCCGGY 2 cut(s) 353, 357
BssECI CCNNGG 7 cut(s) 298, 305, 463, 471, 679, 742, 861
BssMI GATC 6 cut(s) 7, 121, 267, 442, 835, 947
BssNI GRCGYC 2 cut(s) 105, 333
BssSI CACGAG 1 cut(s) 1005
BssT1I CCWWGG 3 cut(s) 679, 742, 861
Bst2BI CACGAG 1 cut(s) 1005
Bst2UI CCWGG 1 cut(s) 972
Bst6I CTCTTC 5 cut(s) 164, 284, 537, 1091, 1181
BstACI GRCGYC 2 cut(s) 105, 333
BstAPI GCANNNNNTGC 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 817
BstDEI CTNAG 1 cut(s) 801
BstDSI CCRYGG 3 cut(s) 298, 463, 742
BstEII GGTNACC 1 cut(s) 757
BstF5I GGATG 3 cut(s) 150, 829, 1111
BstFNI CGCG 4 cut(s) 225, 272, 300, 330
BstH2I RGCGCY 1 cut(s) 1276
BstHHI GCGC 4 cut(s) 227, 274, 421, 1275
BstKTI GATC 6 cut(s) 10, 124, 270, 445, 838, 950
BstMBI GATC 6 cut(s) 7, 121, 267, 442, 835, 947
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 6 cut(s) 259, 425, 434, 559, 713, 747
BstNI CCWGG 1 cut(s) 972
BstPAI GACNNNNGTC 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 757
BstSCI CCNGG 2 cut(s) 311, 970
BstSFI CTRYAG 1 cut(s) 1185
BstUI CGCG 4 cut(s) 225, 272, 300, 330
BstV1I GCAGC 7 cut(s) 436, 603, 694, 715, 1171, 1199, 1216
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 2 cut(s) 1078, 1154
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 6 cut(s) 173, 189, 357, 630, 684, 1146
BtgI CCRYGG 3 cut(s) 298, 463, 742
BtsCI GGATG 3 cut(s) 150, 829, 1111
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 185, 496
BveI ACCTGC 2 cut(s) 382, 939
Cac8I GCNNGC 1 cut(s) 817
CaiI CAGNNNCTG 3 cut(s) 658, 1232, 1326
CfoI GCGC 4 cut(s) 227, 274, 421, 1275
Cfr10I RCCGGY 2 cut(s) 353, 357
Cfr13I GGNCC 3 cut(s) 302, 309, 351
Cfr42I CCGCGG 1 cut(s) 301
CpoI CGGWCCG 1 cut(s) 302
CseI GACGC 2 cut(s) 322, 551
Csp6I GTAC 1 cut(s) 397
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CspI CGGWCCG 1 cut(s) 302
CviAII CATG 5 cut(s) 743, 820, 943, 1051, 1131
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 801
DpnI GATC 6 cut(s) 9, 123, 269, 444, 837, 949
DpnII GATC 6 cut(s) 7, 121, 267, 442, 835, 947
EaeI YGGCCR 3 cut(s) 171, 355, 628
EagI CGGCCG 1 cut(s) 355
Eam1104I CTCTTC 5 cut(s) 164, 284, 537, 1091, 1181
EarI CTCTTC 5 cut(s) 164, 284, 537, 1091, 1181
EciI GGCGGA 2 cut(s) 187, 237
Ecl136II GAGCTC 1 cut(s) 318
EclXI CGGCCG 1 cut(s) 355
Eco130I CCWWGG 3 cut(s) 679, 742, 861
Eco24I GRGCYC 3 cut(s) 120, 320, 807
Eco47I GGWCC 3 cut(s) 302, 309, 351
Eco52I CGGCCG 1 cut(s) 355
Eco53kI GAGCTC 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 757
EcoICRI GAGCTC 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 970
EcoT14I CCWWGG 3 cut(s) 679, 742, 861
EcoT38I GRGCYC 3 cut(s) 120, 320, 807
ErhI CCWWGG 3 cut(s) 679, 742, 861
FaeI CATG 5 cut(s) 746, 823, 946, 1054, 1134
FaqI GGGAC 2 cut(s) 295, 1220
FatI CATG 5 cut(s) 742, 819, 942, 1050, 1130
FauI CCCGC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 1077
FokI GGATG 3 cut(s) 137, 836, 1118
FriOI GRGCYC 3 cut(s) 120, 320, 807
FspBI CTAG 3 cut(s) 5, 432, 917
FspI TGCGCA 1 cut(s) 420
GlaI GCGC 4 cut(s) 226, 273, 420, 1274
GsaI CCCAGC 2 cut(s) 637, 662
GsuI CTGGAG 1 cut(s) 1253
HaeII RGCGCY 1 cut(s) 1276
HaeIII GGCC 6 cut(s) 173, 189, 357, 630, 684, 1146
HapII CCGG 6 cut(s) 170, 313, 346, 354, 358, 576
HgaI GACGC 2 cut(s) 322, 551
HhaI GCGC 4 cut(s) 227, 274, 421, 1275
Hin1I GRCGYC 2 cut(s) 105, 333
Hin1II CATG 5 cut(s) 746, 823, 946, 1054, 1134
Hin6I GCGC 4 cut(s) 225, 272, 419, 1273
HinP1I GCGC 4 cut(s) 225, 272, 419, 1273
HinfI GANTC 7 cut(s) 59, 140, 365, 579, 609, 994, 1200
HpaII CCGG 6 cut(s) 170, 313, 346, 354, 358, 576
HphI GGTGA 5 cut(s) 19, 119, 509, 751, 1285
Hpy166II GTNNAC 2 cut(s) 397, 1293
Hpy188I TCNGA 4 cut(s) 34, 103, 139, 871
Hpy188III TCNNGA 3 cut(s) 286, 833, 1197
Hpy8I GTNNAC 2 cut(s) 397, 1293
Hpy99I CGWCG 4 cut(s) 59, 107, 110, 567
HpyAV CCTTC 2 cut(s) 1126, 1215
HpyCH4IV ACGT 2 cut(s) 105, 338
HpyCH4V TGCA 8 cut(s) 452, 553, 619, 710, 815, 1141, 1187, 1320
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 425, 434, 559, 713, 747
HpyF3I CTNAG 1 cut(s) 801
HpySE526I ACGT 2 cut(s) 105, 338
Hsp92I GRCGYC 2 cut(s) 105, 333
Hsp92II CATG 5 cut(s) 746, 823, 946, 1054, 1134
HspAI GCGC 4 cut(s) 225, 272, 419, 1273
KspI CCGCGG 1 cut(s) 301
Kzo9I GATC 6 cut(s) 7, 121, 267, 442, 835, 947
LguI GCTCTTC 2 cut(s) 164, 284
LmnI GCTCC 6 cut(s) 315, 323, 859, 1030, 1157, 1323
Lsp1109I GCAGC 7 cut(s) 436, 603, 694, 715, 1171, 1199, 1216
LweI GCATC 3 cut(s) 1031, 1096, 1199
MaeI CTAG 3 cut(s) 5, 432, 917
MaeII ACGT 2 cut(s) 105, 338
MaeIII GTNAC 5 cut(s) 218, 334, 610, 757, 1121
MalI GATC 6 cut(s) 9, 123, 269, 444, 837, 949
MboI GATC 6 cut(s) 7, 121, 267, 442, 835, 947
MboII GAAGA 8 cut(s) 16, 151, 301, 521, 554, 1108, 1168, 1200
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 4 cut(s) 120, 320, 575, 807
MluCI AATT 5 cut(s) 484, 529, 555, 849, 998
MlyI GAGTC 4 cut(s) 53, 134, 618, 988
MmeI TCCRAC 4 cut(s) 75, 126, 162, 1083
MseI TTAA 4 cut(s) 483, 516, 768, 1013
MslI CAYNNNNRTG 3 cut(s) 624, 1076, 1152
MspA1I CMGCKG 3 cut(s) 300, 633, 1229
MspI CCGG 6 cut(s) 170, 313, 346, 354, 358, 576
MspR9I CCNGG 2 cut(s) 313, 972
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 1 cut(s) 972
MvnI CGCG 4 cut(s) 225, 272, 300, 330
MwoI GCNNNNNNNGC 6 cut(s) 259, 425, 434, 559, 713, 747
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 742
NdeI CATATG 1 cut(s) 1077
NdeII GATC 6 cut(s) 7, 121, 267, 442, 835, 947
NlaIII CATG 5 cut(s) 746, 823, 946, 1054, 1134
NlaIV GGNNCC 3 cut(s) 311, 469, 1032
NmeAIII GCCGAG 2 cut(s) 139, 165
NmuCI GTSAC 3 cut(s) 334, 610, 757
NsbI TGCGCA 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 624
PaqCI CACCTGC 1 cut(s) 382
PciSI GCTCTTC 2 cut(s) 164, 284
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 365, 579, 1200
PflMI CCANNNNNTGG 1 cut(s) 180
PfoI TCCNGGA 2 cut(s) 311, 970
PleI GAGTC 4 cut(s) 53, 134, 617, 988
PpsI GAGTC 4 cut(s) 53, 134, 617, 988
PpuMI RGGWCCY 1 cut(s) 309
PshAI GACNNNNGTC 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 970
PspEI GGTNACC 1 cut(s) 757
PspFI CCCAGC 2 cut(s) 633, 658
PspGI CCWGG 1 cut(s) 970
PspN4I GGNNCC 3 cut(s) 311, 469, 1032
PspPI GGNCC 3 cut(s) 302, 309, 351
PspPPI RGGWCCY 1 cut(s) 309
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 3 cut(s) 658, 1232, 1326
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 1229
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 3 cut(s) 624, 1076, 1152
Rsr2I CGGWCCG 1 cut(s) 302
RsrII CGGWCCG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 320
SacII CCGCGG 1 cut(s) 301
SapI GCTCTTC 2 cut(s) 164, 284
SaqAI TTAA 4 cut(s) 483, 516, 768, 1013
Sau3AI GATC 6 cut(s) 7, 121, 267, 442, 835, 947
Sau96I GGNCC 3 cut(s) 302, 309, 351
SchI GAGTC 4 cut(s) 53, 134, 618, 988
ScrFI CCNGG 2 cut(s) 313, 972
SduI GDGCHC 4 cut(s) 120, 320, 575, 807
SfaNI GCATC 3 cut(s) 1031, 1096, 1199
SfcI CTRYAG 1 cut(s) 1185
Sfr303I CCGCGG 1 cut(s) 301
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 3 cut(s) 302, 309, 351
SmiMI CAYNNNNRTG 3 cut(s) 624, 1076, 1152
SmlI CTYRAG 1 cut(s) 895
SmoI CTYRAG 1 cut(s) 895
Sse9I AATT 5 cut(s) 484, 529, 555, 849, 998
SspMI CTAG 3 cut(s) 5, 432, 917
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 311, 970
StyI CCWWGG 3 cut(s) 679, 742, 861
TaiI ACGT 2 cut(s) 108, 341
TaqI TCGA 3 cut(s) 90, 445, 596
TaqII GACCGA 2 cut(s) 271, 319
TasI AATT 5 cut(s) 484, 529, 555, 849, 998
TatI WGTACW 1 cut(s) 396
TauI GCSGC 8 cut(s) 113, 253, 256, 297, 300, 333, 431, 633
TfiI GAWTC 3 cut(s) 365, 579, 1200
Tru1I TTAA 4 cut(s) 483, 516, 768, 1013
Tru9I TTAA 4 cut(s) 483, 516, 768, 1013
TscAI CASTG 2 cut(s) 185, 496
TseFI GTSAC 3 cut(s) 334, 610, 757
TseI GCWGC 7 cut(s) 449, 616, 707, 728, 1184, 1187, 1229
Tsp45I GTSAC 3 cut(s) 334, 610, 757
TspDTI ATGAA 3 cut(s) 522, 1067, 1235
TspGWI ACGGA 3 cut(s) 452, 1106, 1109
TspRI CASTG 2 cut(s) 185, 496
Van91I CCANNNNNTGG 1 cut(s) 180
VpaK11BI GGWCC 3 cut(s) 302, 309, 351
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 1 cut(s) 555
XspI CTAG 3 cut(s) 5, 432, 917
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.