Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011577

Physical Location & Seq

Genomic Coordinates Reverse (-)

12777165 .. 12778795

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGCCAGTTTCTAGGCAAGAAGGCATACGACAAGGCTGCCATCAAATGCAATGGACGAGAAGCGGTCACCAACTTTGATCCAAGCTCGTATGATGGGGAGATAATGTCTGAGGCCAATAACGAAGGCAGCCACCGGAGTCTTGATCTGAACTTGGGAATTGCTCCGCCTTTGGTTTCTGAAATCCAAAAGGAGAACATGAATTTGAGAAGCTTTCCTTTTCAGCTAGGCTGCAACGACATTCCCGTTCACTTGAGAGCAAGGAATGAGATCTCTGTTCCAGCACCCATGAGGTCTCATCTTTCTCATGGCTCAATTGTGGCGTCTAAGGAGCCTCCTATAATGAGCAACATGAATTCCAGTTTCTTTCCCATTCATATGGAAAGAGCAACGGAGAAGAGTATGGATGTTAACTCATTTCCCAATTGGGCATGGCAAGTTCAAGGCCTGAATGGCAGGACAACCTCCATGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCCTCTTCAACAGCCACTTCATCGTCATCAGCTGTCACTCAACTTTATTTCCCTAACACGGCCATTCACCGCCATCATTTTTCACCGTCATTCACCAACAACAACCCCCATTTCTATTGCAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

211

Amino Acids

23.14

Weight (kDa)

7.83

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15180 FvH4_6g15180
malus_domestica	MD04G1105200.v1.1 MD12G1125900.v1.1
prunus_persica	Prupe.6G242400_v2.0.a1 Prupe.6G242400_v2.0.a1
pyrus_communis	pycom04g10050 pycom12g12410
rosa_chinensis	RchiOBHm_Chr3g0468481 RchiOBHm_Chr3g0468491
rosa_laevigata	RLG00000024425
rosa_roxburghii	Rroxscaffold_6G00412720
rosa_rugosa	Rorug03G0095700 Rorug03G0095700 Rorug03G0095700
rosa_samantha	Rh3AG143600 Rh3AG144100 Rh3BG166100 Rh3DG165700
rosa_wichuraiana	Rw3G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 167, 574
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	202, 355
AcyI	GRCGYC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	562
AgsI	TTSAA	2 cut(s)	443, 513
AluBI	AGCT	5 cut(s)	87, 213, 226, 536, 630
AluI	AGCT	5 cut(s)	87, 213, 226, 536, 630
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	630
AoxI	GGCC	4 cut(s)	4, 114, 445, 564
ApeKI	GCWGC	5 cut(s)	38, 129, 231, 485, 488
ApoI	RAATTY	2 cut(s)	202, 355
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	61, 563, 579, 589
BbvI	GCAGC	5 cut(s)	25, 141, 218, 472, 500
BccI	CCATC	3 cut(s)	50, 89, 585
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	14, 227
BfmI	CTRYAG	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	453
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	5 cut(s)	39, 130, 232, 486, 489
BlsI	GCNGC	5 cut(s)	40, 131, 233, 487, 490
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	333
BmsI	GCATC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	7, 360
Bse3DI	GCAATG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	7, 360
BseXI	GCAGC	5 cut(s)	25, 141, 218, 472, 500
BshFI	GGCC	4 cut(s)	6, 116, 447, 566
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	6, 116, 447, 566
Bso31I	GGTCTC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	79, 145, 270
BspACI	CCGC	3 cut(s)	65, 167, 574
BspANI	GGCC	4 cut(s)	6, 116, 447, 566
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	7, 360
BssMI	GATC	3 cut(s)	79, 145, 270
BssNI	GRCGYC	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	3 cut(s)	392, 482, 514
BstACI	GRCGYC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	111, 327
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	3 cut(s)	82, 148, 273
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	79, 145, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstPI	GGTNACC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	5 cut(s)	25, 141, 218, 472, 500
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	6, 116, 447, 566
BtsCI	GGATG	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	312
CviAII	CATG	6 cut(s)	199, 289, 308, 352, 432, 469
DdeI	CTNAG	2 cut(s)	111, 327
DpnI	GATC	3 cut(s)	81, 147, 272
DpnII	GATC	3 cut(s)	79, 145, 270
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	3 cut(s)	392, 482, 514
EarI	CTCTTC	3 cut(s)	392, 482, 514
EciI	GGCGGA	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	300
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	355
FaeI	CATG	6 cut(s)	202, 292, 311, 355, 435, 472
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FatI	CATG	6 cut(s)	198, 288, 307, 351, 431, 468
FauNDI	CATATG	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	39, 130, 232, 486, 489
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	5 cut(s)	39, 130, 232, 486, 489
FspBI	CTAG	2 cut(s)	14, 227
GluI	GCNGC	5 cut(s)	39, 130, 232, 486, 489
HaeIII	GGCC	4 cut(s)	6, 116, 447, 566
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	6 cut(s)	202, 292, 311, 355, 435, 472
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	2 cut(s)	139, 501
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	4 cut(s)	61, 563, 579, 589
Hpy166II	GTNNAC	2 cut(s)	250, 412
Hpy188I	TCNGA	3 cut(s)	112, 150, 181
Hpy188III	TCNNGA	2 cut(s)	143, 498
Hpy8I	GTNNAC	2 cut(s)	250, 412
HpyAV	CCTTC	2 cut(s)	16, 119
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4V	TGCA	4 cut(s)	51, 234, 488, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	111, 327
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	6 cut(s)	202, 292, 311, 355, 435, 472
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	79, 145, 270
LmnI	GCTCC	2 cut(s)	169, 331
LpnPI	CCDG	7 cut(s)	20, 149, 294, 373, 442, 461, 483
Lsp1109I	GCAGC	5 cut(s)	25, 141, 218, 472, 500
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	14, 227
MaeIII	GTNAC	2 cut(s)	67, 538
MalI	GATC	3 cut(s)	81, 147, 272
MboI	GATC	3 cut(s)	79, 145, 270
MboII	GAAGA	3 cut(s)	409, 469, 501
MfeI	CAATTG	2 cut(s)	315, 424
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	5 cut(s)	159, 202, 315, 355, 424
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	106, 285, 345, 475, 517
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	136
MunI	CAATTG	2 cut(s)	315, 424
MwoI	GCNNNNNNNGC	1 cut(s)	453
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	3 cut(s)	79, 145, 270
NlaIII	CATG	6 cut(s)	202, 292, 311, 355, 435, 472
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	67, 538
PceI	AGGCCT	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	501
PkrI	GCNGC	5 cut(s)	40, 131, 233, 487, 490
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	630
PsuI	RGATCY	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	5 cut(s)	39, 130, 232, 486, 489
Sau3AI	GATC	3 cut(s)	79, 145, 270
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	148
SetI	ASST	7 cut(s)	89, 215, 228, 296, 467, 538, 632
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	5 cut(s)	159, 202, 315, 355, 424
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	3 cut(s)	65, 167, 574
SspMI	CTAG	2 cut(s)	14, 227
StuI	AGGCCT	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	591
TasI	AATT	5 cut(s)	159, 202, 315, 355, 424
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	67, 538
TseI	GCWGC	5 cut(s)	38, 129, 231, 485, 488
Tsp45I	GTSAC	2 cut(s)	67, 538
TspDTI	ATGAA	4 cut(s)	215, 365, 368, 513
TspGWI	ACGGA	1 cut(s)	407
XapI	RAATTY	2 cut(s)	202, 355
XspI	CTAG	2 cut(s)	14, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.