Rh3DG165700

Floral homeotic protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
14384438 .. 14387861
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG165700.1

Sequence Viewer

Length: 960 bp
ATGCTAGATCTCAACCTCAACTTCTACACTCCCGAAATGGAGACCTCCGCCGCGAGCAGCTTCAACGACTCCTCCAACGACTCCGCCTCCTCCGCCACCCTCAACTTCCTCGACCTCCAAAACGACGACGCCGCCCCCGCTTACGACGACGCCGATCATCATAACTACTTTGACGGCCGCACCATCCAGCTCTTCCCTCCTCAACCCCAGCCCCTACGGTCCTCGACGACCAAGCAGTGGCTGGGGCTCTCCTCCGGCGGAGCACCGCAGCGTTACTCTGCTCCTCCTCCTCCTCCGCCGCTCGCGGAGCAGAGGATCGTGCCTCTCCCGGAGAAGGTCAAGAAGAGCCGCCGGGGACCGAGGTCCCGGAGCTCGCAGTATCGCGGCGTCACGTTTTATCGGAGGACCGGGAGATGGGAATCGCATATTTGGGATAATGGGAAGCAGGTGTACTTGGGTGGATTTGACACTGCGCATTCTGCAGCTAGGGCTTATGATCGAGCTGCGATAAAGTTCCGTGGAACTGAGGCTGATATTAATTTCAACGTTAGTGATTATGATGAGGATATTAAGCAGATGAGTAAATTTACAAAGGAAGAGTTTGTGCATATCCTGCGTCGCCAGAGCACCGGATTCGCCAGAGGAAGCTCGAAATACAGGGGAGTCACGCTGCACAAATGTGGCCGCTGGGAAGCTCGTATGGGCCAGTTGCTGGGCAAGAAGTATATATACCTTGGCCTATTTGATAGCGAGATTGAAGCTGCAAGAGCATATGACCAGGCTGCCATCAAATGCCATGGAAGGGAAGCGGTCACCAACTTTAATCCAAGCTTATATGATGGGGAGATAATGGCTGAGGCCAACAATGCAGGTACCTATTGTTATCAGAGAATCAATTATGATCTTTGTATGAAGTCTATCAGATCAATTGAGCAGACCATAAACTTTGTCTTTTGCTGA

Protein Analysis

319

Amino Acids

36.14

Weight (kDa)

8.47

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 126 - 174 4.5e-11 AP2 domain
AP2 PF00847 217 - 267 7.5e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc16I TGCGCA 1 cut(s) 474
Acc36I ACCTGC 2 cut(s) 436, 860
Acc65I GGTACC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 872
AccB7I CCANNNNNTGG 2 cut(s) 237, 712
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 3 cut(s) 53, 305, 384
AclI AACGTT 1 cut(s) 546
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 2 cut(s) 175, 682
AcsI RAATTY 1 cut(s) 584
AcyI GRCGYC 3 cut(s) 129, 150, 387
AfaI GTAC 2 cut(s) 452, 874
AfiI CCNNNNNNNGG 5 cut(s) 237, 334, 414, 712, 802
AgsI TTSAA 3 cut(s) 64, 544, 758
AjnI CCWGG 1 cut(s) 777
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 9 cut(s) 60, 190, 372, 485, 503, 648, 695, 761, 831
AluI AGCT 9 cut(s) 60, 190, 372, 485, 503, 648, 695, 761, 831
Alw21I GWGCWC 3 cut(s) 265, 374, 629
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 2 cut(s) 241, 712
AoxI GGCC 5 cut(s) 175, 682, 703, 736, 858
ApeKI GCWGC 7 cut(s) 57, 268, 482, 503, 670, 761, 782
ApoI RAATTY 1 cut(s) 584
AseI ATTAAT 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 872
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 5 cut(s) 219, 356, 363, 405, 703
AsuC2I CCSGG 4 cut(s) 329, 353, 367, 409
AsuHPI GGTGA 1 cut(s) 805
AvaII GGWCC 4 cut(s) 219, 356, 363, 405
BanI GGYRCC 1 cut(s) 872
BanII GRGCYC 2 cut(s) 249, 374
BarI GAAGNNNNNNTAC 4 cut(s) 434, 466, 713, 745
Bbv12I GWGCWC 3 cut(s) 265, 374, 629
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 7 cut(s) 69, 280, 490, 494, 657, 748, 769
BccI CCATC 4 cut(s) 191, 408, 794, 833
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 616, 650
BciT130I CCWGG 1 cut(s) 779
BcnI CCSGG 4 cut(s) 329, 353, 367, 409
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 5, 486
BfmI CTRYAG 1 cut(s) 480
BfuAI ACCTGC 2 cut(s) 436, 860
BglII AGATCT 1 cut(s) 7
Bme1390I CCNGG 5 cut(s) 329, 353, 367, 409, 779
Bme18I GGWCC 4 cut(s) 219, 356, 363, 405
BmgT120I GGNCC 5 cut(s) 219, 356, 363, 405, 703
BmiI GGNNCC 3 cut(s) 357, 365, 874
BmrFI CCNGG 5 cut(s) 329, 353, 367, 409, 779
BoxI GACNNNNGTC 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 855
BpuMI CCSGG 4 cut(s) 329, 353, 367, 409
BsaBI GATNNNNATC 1 cut(s) 418
BsaHI GRCGYC 3 cut(s) 129, 150, 387
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 352, 359, 517, 733, 796
BsaWI WCCGGW 1 cut(s) 629
BsaXI ACNNNNNCTCC 4 cut(s) 56, 71, 86, 101
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 334, 414, 712, 802
Bse1I ACTGG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 418
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 5 cut(s) 352, 359, 517, 733, 796
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 418
BseLI CCNNNNNNNGG 5 cut(s) 237, 334, 414, 712, 802
BseMII CTCAG 2 cut(s) 516, 846
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 8 cut(s) 61, 79, 189, 241, 273, 276, 279, 282
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 7 cut(s) 69, 280, 490, 494, 657, 748, 769
BseYI CCCAGC 4 cut(s) 207, 241, 687, 712
BsgI GTGCAG 1 cut(s) 656
Bsh1236I CGCG 3 cut(s) 53, 305, 384
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 5 cut(s) 177, 684, 705, 738, 860
BshNI GGYRCC 1 cut(s) 872
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 3 cut(s) 265, 374, 629
BsiSI CCGG 6 cut(s) 255, 329, 352, 367, 408, 630
BslFI GGGAC 2 cut(s) 349, 369
BslI CCNNNNNNNGG 5 cut(s) 237, 334, 414, 712, 802
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 349, 369
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 5 cut(s) 177, 684, 705, 738, 860
Bso31I GGTCTC 1 cut(s) 35
Bsp1286I GDGCHC 4 cut(s) 249, 265, 374, 629
Bsp143I GATC 6 cut(s) 7, 154, 315, 496, 901, 923
Bsp19I CCATGG 1 cut(s) 796
BspANI GGCC 5 cut(s) 177, 684, 705, 738, 860
BspCNI CTCAG 2 cut(s) 517, 847
BspFNI CGCG 3 cut(s) 53, 305, 384
BspLI GGNNCC 3 cut(s) 357, 365, 874
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 2 cut(s) 436, 860
BspPI GGATC 1 cut(s) 323
BspQI GCTCTTC 2 cut(s) 197, 338
BspT107I GGYRCC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 706
BssECI CCNNGG 5 cut(s) 352, 359, 517, 733, 796
BssMI GATC 6 cut(s) 7, 154, 315, 496, 901, 923
BssNI GRCGYC 3 cut(s) 129, 150, 387
BssT1I CCWWGG 2 cut(s) 733, 796
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 3 cut(s) 197, 338, 591
BstACI GRCGYC 3 cut(s) 129, 150, 387
BstAPI GCANNNNNTGC 1 cut(s) 613
BstC8I GCNNGC 3 cut(s) 55, 303, 374
BstDEI CTNAG 2 cut(s) 525, 855
BstDSI CCRYGG 2 cut(s) 517, 796
BstEII GGTNACC 1 cut(s) 811
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 3 cut(s) 53, 305, 384
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 6 cut(s) 10, 157, 318, 499, 904, 926
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 6 cut(s) 7, 154, 315, 496, 901, 923
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 8 cut(s) 92, 137, 307, 479, 488, 613, 767, 866
BstNI CCWGG 1 cut(s) 779
BstPAI GACNNNNGTC 1 cut(s) 361
BstPI GGTNACC 1 cut(s) 811
BstSCI CCNGG 5 cut(s) 327, 351, 365, 407, 777
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 3 cut(s) 53, 305, 384
BstV1I GCAGC 7 cut(s) 69, 280, 490, 494, 657, 748, 769
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 5 cut(s) 177, 684, 705, 738, 860
BtgI CCRYGG 2 cut(s) 517, 796
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 2 cut(s) 242, 468
BtsIMutI CAGTG 2 cut(s) 242, 468
BveI ACCTGC 2 cut(s) 436, 860
Cac8I GCNNGC 3 cut(s) 55, 303, 374
CaiI CAGNNNCTG 2 cut(s) 241, 712
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 5 cut(s) 219, 356, 363, 405, 703
CseI GACGC 4 cut(s) 137, 158, 376, 605
Csp6I GTAC 2 cut(s) 451, 873
CviAII CATG 1 cut(s) 797
CviQI GTAC 2 cut(s) 451, 873
DdeI CTNAG 2 cut(s) 525, 855
DpnI GATC 6 cut(s) 9, 156, 317, 498, 903, 925
DpnII GATC 6 cut(s) 7, 154, 315, 496, 901, 923
EaeI YGGCCR 2 cut(s) 175, 682
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 3 cut(s) 197, 338, 591
EarI CTCTTC 3 cut(s) 197, 338, 591
EciI GGCGGA 5 cut(s) 37, 73, 82, 273, 285
Ecl136II GAGCTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 733, 796
Eco24I GRGCYC 2 cut(s) 249, 374
Eco31I GGTCTC 1 cut(s) 35
Eco47I GGWCC 4 cut(s) 219, 356, 363, 405
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 811
EcoICRI GAGCTC 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 363
EcoO65I GGTNACC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 2 cut(s) 733, 796
EcoT38I GRGCYC 2 cut(s) 249, 374
ErhI CCWWGG 2 cut(s) 733, 796
FaeI CATG 1 cut(s) 800
FaqI GGGAC 2 cut(s) 349, 369
FatI CATG 1 cut(s) 796
FauI CCCGC 1 cut(s) 145
FauNDI CATATG 1 cut(s) 772
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 2 cut(s) 249, 374
FspBI CTAG 2 cut(s) 5, 486
FspI TGCGCA 1 cut(s) 474
GlaI GCGC 1 cut(s) 474
GsaI CCCAGC 4 cut(s) 211, 245, 691, 716
HaeIII GGCC 5 cut(s) 177, 684, 705, 738, 860
HapII CCGG 6 cut(s) 255, 329, 352, 367, 408, 630
HgaI GACGC 4 cut(s) 137, 158, 376, 605
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 3 cut(s) 129, 150, 387
Hin1II CATG 1 cut(s) 800
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 6 cut(s) 68, 80, 419, 633, 663, 891
HpaII CCGG 6 cut(s) 255, 329, 352, 367, 408, 630
HphI GGTGA 1 cut(s) 805
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 402, 888, 923
Hpy188III TCNNGA 2 cut(s) 32, 340
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 6 cut(s) 128, 131, 149, 152, 229, 621
HpyAV CCTTC 2 cut(s) 328, 795
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 392, 546
HpyCH4V TGCA 5 cut(s) 482, 607, 673, 764, 869
HpyF10VI GCNNNNNNNGC 8 cut(s) 92, 137, 307, 479, 488, 613, 767, 866
HpyF3I CTNAG 2 cut(s) 525, 855
HpySE526I ACGT 2 cut(s) 392, 546
Hsp92I GRCGYC 3 cut(s) 129, 150, 387
Hsp92II CATG 1 cut(s) 800
HspAI GCGC 1 cut(s) 473
KpnI GGTACC 1 cut(s) 876
Kzo9I GATC 6 cut(s) 7, 154, 315, 496, 901, 923
LguI GCTCTTC 2 cut(s) 197, 338
LmnI GCTCC 4 cut(s) 260, 286, 307, 369
Lsp1109I GCAGC 7 cut(s) 69, 280, 490, 494, 657, 748, 769
MaeI CTAG 2 cut(s) 5, 486
MaeII ACGT 2 cut(s) 392, 546
MaeIII GTNAC 4 cut(s) 272, 388, 664, 811
MalI GATC 6 cut(s) 9, 156, 317, 498, 903, 925
MbiI CCGCTC 1 cut(s) 301
MboI GATC 6 cut(s) 7, 154, 315, 496, 901, 923
MboII GAAGA 3 cut(s) 184, 355, 608
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 4 cut(s) 249, 265, 374, 629
MluCI AATT 4 cut(s) 538, 584, 895, 927
MlyI GAGTC 3 cut(s) 62, 74, 672
MmeI TCCRAC 1 cut(s) 99
MseI TTAA 3 cut(s) 537, 570, 822
MslI CAYNNNNRTG 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 687
MspI CCGG 6 cut(s) 255, 329, 352, 367, 408, 630
MspR9I CCNGG 5 cut(s) 329, 353, 367, 409, 779
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 3 cut(s) 53, 305, 384
MwoI GCNNNNNNNGC 8 cut(s) 92, 137, 307, 479, 488, 613, 767, 866
NciI CCSGG 4 cut(s) 329, 353, 367, 409
NcoI CCATGG 1 cut(s) 796
NdeI CATATG 1 cut(s) 772
NdeII GATC 6 cut(s) 7, 154, 315, 496, 901, 923
NlaIII CATG 1 cut(s) 800
NlaIV GGNNCC 3 cut(s) 357, 365, 874
NmuCI GTSAC 3 cut(s) 388, 664, 811
NsbI TGCGCA 1 cut(s) 474
OliI CACNNNNGTG 1 cut(s) 678
PaqCI CACCTGC 1 cut(s) 436
PciSI GCTCTTC 2 cut(s) 197, 338
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 3 cut(s) 419, 633, 891
PflMI CCANNNNNTGG 2 cut(s) 237, 712
PfoI TCCNGGA 2 cut(s) 327, 365
PleI GAGTC 3 cut(s) 62, 74, 671
PpsI GAGTC 3 cut(s) 62, 74, 671
PpuMI RGGWCCY 1 cut(s) 363
PshAI GACNNNNGTC 1 cut(s) 361
PshBI ATTAAT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 374
Psp1406I AACGTT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 777
PspEI GGTNACC 1 cut(s) 811
PspFI CCCAGC 4 cut(s) 207, 241, 687, 712
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 3 cut(s) 357, 365, 874
PspPI GGNCC 5 cut(s) 219, 356, 363, 405, 703
PspPPI RGGWCCY 1 cut(s) 363
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 2 cut(s) 241, 712
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 2 cut(s) 452, 874
RsaNI GTAC 2 cut(s) 451, 873
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 1 cut(s) 374
SapI GCTCTTC 2 cut(s) 197, 338
SaqAI TTAA 3 cut(s) 537, 570, 822
Sau3AI GATC 6 cut(s) 7, 154, 315, 496, 901, 923
Sau96I GGNCC 5 cut(s) 219, 356, 363, 405, 703
SchI GAGTC 3 cut(s) 62, 74, 672
ScrFI CCNGG 5 cut(s) 329, 353, 367, 409, 779
SduI GDGCHC 4 cut(s) 249, 265, 374, 629
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 4 cut(s) 219, 356, 363, 405
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 4 cut(s) 538, 584, 895, 927
SspMI CTAG 2 cut(s) 5, 486
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 5 cut(s) 327, 351, 365, 407, 777
StyI CCWWGG 2 cut(s) 733, 796
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 2 cut(s) 395, 549
TaqI TCGA 4 cut(s) 111, 224, 499, 650
TaqII GACCGA 1 cut(s) 373
TasI AATT 4 cut(s) 538, 584, 895, 927
TatI WGTACW 1 cut(s) 450
TauI GCSGC 7 cut(s) 53, 134, 180, 301, 351, 387, 687
TfiI GAWTC 3 cut(s) 419, 633, 891
Tru1I TTAA 3 cut(s) 537, 570, 822
Tru9I TTAA 3 cut(s) 537, 570, 822
TscAI CASTG 2 cut(s) 242, 475
TseFI GTSAC 3 cut(s) 388, 664, 811
TseI GCWGC 7 cut(s) 57, 268, 482, 503, 670, 761, 782
Tsp45I GTSAC 3 cut(s) 388, 664, 811
TspDTI ATGAA 1 cut(s) 926
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 242, 475
Van91I CCANNNNNTGG 2 cut(s) 237, 712
VpaK11BI GGWCC 4 cut(s) 219, 356, 363, 405
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 2 cut(s) 5, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.