Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011577

Physical Location & Seq

Genomic Coordinates Reverse (-)

35724339 .. 35726516

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGAAGCAGGTGTGGATTTGACACTGCGCATTCTGCAGCCAGAGCTTATGATCGAGCTGCGATAAAGTTCCGTGGAACTGAGGCTGATATTAATTTCAATGTTAGTGATTATGATGAGGATATTAAGCAGATGAGTAAATTTACAAAGGAAGAGTTTGTGCATATCCTGCGTCGCCAGAGCACCGGATTCGCTAGAGGAAGCTCGAAATACAGGGGAGTCACGCTGCACAAATGTGGCCGCTGGGAAGCTCGTATGGGCCAGTTGCTGGGCAAGAAGTATATATACCTTGGCCTATTTGATAGCGAGATTGAAGCTGCAAGAGCATATGACCAGGCTGCCATCAAATGCCATGGAAGGGAAGCGGTCACCAACTTTAATCCAAGCTTATATGATGGGGAGTTAATGGCTGAGGCCAACAATGCAGGCATCGATGATAGTCTTGATCTAAACTTGGGAATTGCTCCCCCCTTGGCTTCTGACTGTCCGAATGAGAACATCAACTTGAGCAGCTTTCCTTTTCAGCTAGGCTGCAATGACATTCCTGTTAACATGAAAGCAAGGAATGAGAATTCTGTTCCAGGACTTCCAGCAACTATGAGGACTCAACTGCCTCATGGCTCAATGGTGGCATCTACAGAGCCTTCTCTAATGAGCAGCATGAACTCCAACTTCTTTCCCATCCATATGGAAAGAGCAATGGAGAAGAGTATGGATGCTAACTCCTTCCCTAACTGGGCATGGCAAATGCAAGGCCTTAATGATGGAGCAACTCCAGTGCCACTCTTCTCTGCGGCAGCATCATCAGGATTCCCTTCTTCAACAACAGAATCGTCAGCTCCGATCCCTCCACTTCATTTTCCAAACACATCATTTCTCCAGCGCCACTTTTCACCATCGTTCACCAACAAAACAGCCCATTTCTATTGCAGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

313

Amino Acids

34.42

Weight (kDa)

6.31

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	69 - 119	7.2e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011577)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15180 FvH4_6g15180
malus_domestica	MD04G1105200.v1.1 MD12G1125900.v1.1
prunus_persica	Prupe.6G242400_v2.0.a1 Prupe.6G242400_v2.0.a1
pyrus_communis	pycom04g10050 pycom12g12410
rosa_chinensis	RchiOBHm_Chr3g0468481 RchiOBHm_Chr3g0468491
rosa_laevigata	RLG00000024425
rosa_roxburghii	Rroxscaffold_6G00412720
rosa_rugosa	Rorug03G0095700 Rorug03G0095700 Rorug03G0095700
rosa_samantha	Rh3AG143600 Rh3AG144100 Rh3BG166100 Rh3DG165700
rosa_wichuraiana	Rw3G013600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	3 cut(s)	241, 365, 794
AclWI	GGATC	1 cut(s)	838
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	140, 571
AfiI	CCNNNNNNNGG	3 cut(s)	268, 358, 736
AgsI	TTSAA	3 cut(s)	100, 314, 822
AjnI	CCWGG	2 cut(s)	333, 580
AleI	CACNNNNGTG	1 cut(s)	234
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	838
AlwNI	CAGNNNCTG	2 cut(s)	268, 936
AoxI	GGCC	5 cut(s)	238, 259, 292, 414, 754
ApeKI	GCWGC	9 cut(s)	38, 59, 226, 317, 338, 510, 531, 657, 797
ApoI	RAATTY	2 cut(s)	140, 571
AseI	ATTAAT	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	31, 885
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	361, 885, 895
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
Bbv12I	GWGCWC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	9 cut(s)	46, 50, 213, 304, 325, 518, 522, 669, 809
BccI	CCATC	5 cut(s)	350, 389, 689, 758, 904
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	2 cut(s)	335, 582
BfaI	CTAG	2 cut(s)	195, 527
BfmI	CTRYAG	2 cut(s)	36, 636
BfoI	RGCGCY	1 cut(s)	886
Bme1390I	CCNGG	2 cut(s)	335, 582
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	335, 582
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	4 cut(s)	438, 641, 706, 809
BmuI	ACTGGG	1 cut(s)	745
BpmI	CTGGAG	2 cut(s)	759, 863
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	526
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	73, 289, 352, 471
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 358, 736
Bse1I	ACTGG	3 cut(s)	262, 740, 776
Bse3DI	GCAATG	2 cut(s)	541, 705
BseBI	CCWGG	2 cut(s)	335, 582
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	4 cut(s)	73, 289, 352, 471
BseGI	GGATG	2 cut(s)	681, 721
BseLI	CCNNNNNNNGG	3 cut(s)	268, 358, 736
BseMI	GCAATG	2 cut(s)	541, 705
BseMII	CTCAG	2 cut(s)	72, 402
BseNI	ACTGG	3 cut(s)	262, 740, 776
BseXI	GCAGC	9 cut(s)	46, 50, 213, 304, 325, 518, 522, 669, 809
BseYI	CCCAGC	2 cut(s)	243, 268
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	5 cut(s)	240, 261, 294, 416, 756
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	268, 358, 736
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	5 cut(s)	240, 261, 294, 416, 756
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	52, 445, 843
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	3 cut(s)	241, 365, 794
BspANI	GGCC	5 cut(s)	240, 261, 294, 416, 756
BspCNI	CTCAG	2 cut(s)	73, 403
BspDI	ATCGAT	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	838
BsrDI	GCAATG	2 cut(s)	541, 705
BsrI	ACTGG	3 cut(s)	262, 740, 776
BssECI	CCNNGG	4 cut(s)	73, 289, 352, 471
BssMI	GATC	3 cut(s)	52, 445, 843
BssT1I	CCWWGG	3 cut(s)	289, 352, 471
Bst2UI	CCWGG	2 cut(s)	335, 582
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	3 cut(s)	147, 701, 791
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	2 cut(s)	81, 411
BstDSI	CCRYGG	2 cut(s)	73, 352
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	681, 721
BstH2I	RGCGCY	1 cut(s)	886
BstHHI	GCGC	2 cut(s)	31, 885
BstKTI	GATC	3 cut(s)	55, 448, 846
BstMBI	GATC	3 cut(s)	52, 445, 843
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 44, 169, 323, 422
BstNI	CCWGG	2 cut(s)	335, 582
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	333, 580
BstSFI	CTRYAG	2 cut(s)	36, 636
BstV1I	GCAGC	9 cut(s)	46, 50, 213, 304, 325, 518, 522, 669, 809
BstXI	CCANNNNNNTGG	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	240, 261, 294, 416, 756
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	2 cut(s)	73, 352
BtsCI	GGATG	2 cut(s)	681, 721
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 783
Cac8I	GCNNGC	1 cut(s)	427
CaiI	CAGNNNCTG	2 cut(s)	268, 936
CfoI	GCGC	2 cut(s)	31, 885
Cfr13I	GGNCC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	432
CseI	GACGC	1 cut(s)	161
CviAII	CATG	5 cut(s)	353, 553, 617, 661, 741
DdeI	CTNAG	2 cut(s)	81, 411
DpnI	GATC	3 cut(s)	54, 447, 845
DpnII	GATC	3 cut(s)	52, 445, 843
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	3 cut(s)	147, 701, 791
EarI	CTCTTC	3 cut(s)	147, 701, 791
Eco130I	CCWWGG	3 cut(s)	289, 352, 471
Eco147I	AGGCCT	1 cut(s)	756
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	333, 580
EcoT14I	CCWWGG	3 cut(s)	289, 352, 471
ErhI	CCWWGG	3 cut(s)	289, 352, 471
FaeI	CATG	5 cut(s)	356, 556, 620, 664, 744
FatI	CATG	5 cut(s)	352, 552, 616, 660, 740
FauNDI	CATATG	2 cut(s)	328, 687
FokI	GGATG	2 cut(s)	668, 728
FspBI	CTAG	2 cut(s)	195, 527
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	2 cut(s)	30, 884
GsaI	CCCAGC	2 cut(s)	247, 272
GsuI	CTGGAG	2 cut(s)	759, 863
HaeII	RGCGCY	1 cut(s)	886
HaeIII	GGCC	5 cut(s)	240, 261, 294, 416, 756
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	31, 885
Hin1II	CATG	5 cut(s)	356, 556, 620, 664, 744
Hin6I	GCGC	2 cut(s)	29, 883
HinP1I	GCGC	2 cut(s)	29, 883
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	5 cut(s)	189, 219, 604, 810, 830
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	361, 885, 895
Hpy166II	GTNNAC	2 cut(s)	550, 903
Hpy188I	TCNGA	3 cut(s)	481, 489, 843
Hpy188III	TCNNGA	2 cut(s)	443, 807
Hpy8I	GTNNAC	2 cut(s)	550, 903
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	4 cut(s)	351, 654, 736, 825
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	8 cut(s)	38, 163, 229, 320, 425, 534, 751, 930
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 44, 169, 323, 422
HpyF3I	CTNAG	2 cut(s)	81, 411
Hsp92II	CATG	5 cut(s)	356, 556, 620, 664, 744
HspAI	GCGC	2 cut(s)	29, 883
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	52, 445, 843
LmnI	GCTCC	4 cut(s)	469, 767, 844, 933
Lsp1109I	GCAGC	9 cut(s)	46, 50, 213, 304, 325, 518, 522, 669, 809
LweI	GCATC	4 cut(s)	438, 641, 706, 809
MaeI	CTAG	2 cut(s)	195, 527
MaeIII	GTNAC	2 cut(s)	220, 367
MalI	GATC	3 cut(s)	54, 447, 845
MboI	GATC	3 cut(s)	52, 445, 843
MboII	GAAGA	4 cut(s)	164, 718, 778, 810
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	94, 140, 459, 571
MlyI	GAGTC	2 cut(s)	228, 598
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	7 cut(s)	76, 112, 191, 406, 594, 624, 858
MseI	TTAA	6 cut(s)	93, 126, 378, 404, 549, 759
MslI	CAYNNNNRTG	2 cut(s)	234, 686
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	335, 582
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	335, 582
MwoI	GCNNNNNNNGC	5 cut(s)	35, 44, 169, 323, 422
NcoI	CCATGG	1 cut(s)	352
NdeI	CATATG	2 cut(s)	328, 687
NdeII	GATC	3 cut(s)	52, 445, 843
NlaIII	CATG	5 cut(s)	356, 556, 620, 664, 744
NmuCI	GTSAC	2 cut(s)	220, 367
NsbI	TGCGCA	1 cut(s)	30
OliI	CACNNNNGTG	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	189, 810, 830
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	580
PleI	GAGTC	2 cut(s)	227, 598
PpsI	GAGTC	2 cut(s)	227, 598
PshBI	ATTAAT	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	333, 580
PspEI	GGTNACC	1 cut(s)	367
PspFI	CCCAGC	2 cut(s)	243, 268
PspGI	CCWGG	2 cut(s)	333, 580
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	2 cut(s)	268, 936
RseI	CAYNNNNRTG	2 cut(s)	234, 686
SaqAI	TTAA	6 cut(s)	93, 126, 378, 404, 549, 759
Sau3AI	GATC	3 cut(s)	52, 445, 843
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	228, 598
ScrFI	CCNGG	2 cut(s)	335, 582
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	4 cut(s)	438, 641, 706, 809
SfcI	CTRYAG	2 cut(s)	36, 636
SmiMI	CAYNNNNRTG	2 cut(s)	234, 686
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	4 cut(s)	94, 140, 459, 571
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	3 cut(s)	241, 365, 794
SspMI	CTAG	2 cut(s)	195, 527
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	2 cut(s)	333, 580
StyI	CCWWGG	3 cut(s)	289, 352, 471
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	55, 206, 432
TasI	AATT	4 cut(s)	94, 140, 459, 571
TauI	GCSGC	2 cut(s)	243, 797
TfiI	GAWTC	3 cut(s)	189, 810, 830
Tru1I	TTAA	6 cut(s)	93, 126, 378, 404, 549, 759
Tru9I	TTAA	6 cut(s)	93, 126, 378, 404, 549, 759
TscAI	CASTG	2 cut(s)	31, 783
TseFI	GTSAC	2 cut(s)	220, 367
TseI	GCWGC	9 cut(s)	38, 59, 226, 317, 338, 510, 531, 657, 797
Tsp45I	GTSAC	2 cut(s)	220, 367
TspDTI	ATGAA	3 cut(s)	569, 677, 845
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	31, 783
Van91I	CCANNNNNTGG	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	93
XapI	RAATTY	2 cut(s)	140, 571
XspI	CTAG	2 cut(s)	195, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.