Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Reverse (-)

9601180 .. 9606016

Gene Structure 4837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGTACAACTGAGAGATCAAAAAAGAGGGTTCAACTATGGAAGAAAGCTGCTGTTCATTTTGCTTTGTGTTTTGTTATGGGGTTCTTCACAGGCTTCGCTCCCACATTTAAACCTTCCATCTTTTCTAAACCTGCTGTGAGTACATCAAAGAAAGTAGAGTTTTCACCTCAACCAATTGAGCCTCCGCAACAAGTAGCAAATGTCGATAGAAGTTTGATAGCAGAAGCAGAAAATTTGACTATGCAGGCAGCATCATCCCCTCCATGGTCTGAAGAAAACTACTCCGAAACCGAAAGGAGGATGTCAGAAGATGAAGAAGACGAAGAGAAAAAACCCAGCTTGACACCAAGAAGATTCATAATCATAGTCACACCAACAAGCACCAAAAACCCACTAAAATGTGTGTTTCTGAGAAGACTGGCCAACACCATCAAGTTGGTTCCTCAGCCATTGTTGTGGATTGTGGTGGAAGGGAAGACCGAGTCTAATGAGGTTTCTGAAGTTCTTAGGAAAACAGGTATCATGTATAGGCATTTGGTTTTTAAAGAGAACTTCACAGATACTGAGGCTGAAATGGATCATCAGAGGAATGTTGCTCTCAAGCACATTGAGCAGCACAAGCTTAGTGGGATTGTTCACTTTGCTGGGCTTTCCAATGTCTATGATCTTGGCTTCTTTGATCAGCTCAGAGAAATTGAGGTGTTTGGGACATGGCCAATGGCAATACTAGCAGCAAACAAGAAAAAAGTGATCATTGAAGGACCTGTATGCGATTCTTCACATGTGATAGGATGGCATATCCTAAGGAAAATGAACAACACTGATCAAACAGATGAGACTAACAGACTTCGCATTCATATTTCAAGCTTTGCATTCAACAGCTCAATCCTATGGGACCCTGAAAGATGGGGTCGTACTTCATCACTTCAAAGCACCTCTCAGAATTCCATGAAATTTGTAAAGCAAGTGGTTCTTGAAGATGAGACAAAACTAAAGGGAATCCCACCAGAAGACTGCTCAAAGATCATGCTTTGGTCCCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

350

Amino Acids

39.92

Weight (kDa)

8.24

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	141 - 348	1e-59	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	588
AcoI	YGGCCR	2 cut(s)	423, 716
AcsI	RAATTY	3 cut(s)	235, 946, 956
AcuI	CTGAAG	2 cut(s)	294, 522
AfaI	GTAC	3 cut(s)	7, 145, 919
AfiI	CCNNNNNNNGG	2 cut(s)	267, 300
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	6 cut(s)	35, 761, 867, 880, 932, 980
AluBI	AGCT	6 cut(s)	50, 342, 625, 688, 870, 885
AluI	AGCT	6 cut(s)	50, 342, 625, 688, 870, 885
Alw26I	GTCTC	2 cut(s)	833, 980
AlwI	GGATC	1 cut(s)	588
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	423, 716
ApeKI	GCWGC	4 cut(s)	50, 251, 616, 734
ApoI	RAATTY	3 cut(s)	235, 946, 956
AspS9I	GGNCC	3 cut(s)	764, 898, 1038
AsuHPI	GGTGA	1 cut(s)	159
AvaII	GGWCC	3 cut(s)	764, 898, 1038
AxyI	CCTNAGG	1 cut(s)	806
BalI	TGGCCA	2 cut(s)	425, 718
BbsI	GAAGAC	4 cut(s)	327, 424, 485, 1020
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	37, 263, 628, 746
BccI	CCATC	4 cut(s)	128, 440, 789, 903
BclI	TGATCA	3 cut(s)	682, 753, 826
BcoDI	GTCTC	2 cut(s)	833, 980
BfaI	CTAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	4 cut(s)	51, 252, 617, 735
BlsI	GCNGC	4 cut(s)	52, 253, 618, 736
Bme18I	GGWCC	3 cut(s)	764, 898, 1038
BmgT120I	GGNCC	3 cut(s)	764, 898, 1038
BmiI	GGNNCC	4 cut(s)	444, 899, 900, 1040
BmsI	GCATC	1 cut(s)	263
BpiI	GAAGAC	4 cut(s)	327, 424, 485, 1020
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 300
Bse1I	ACTGG	1 cut(s)	426
Bse21I	CCTNAGG	1 cut(s)	806
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	3 cut(s)	257, 309, 800
BseLI	CCNNNNNNNGG	2 cut(s)	267, 300
BseMII	CTCAG	5 cut(s)	404, 461, 558, 703, 956
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	4 cut(s)	37, 263, 628, 746
BseYI	CCCAGC	2 cut(s)	338, 647
BshFI	GGCC	2 cut(s)	425, 718
BslFI	GGGAC	3 cut(s)	724, 911, 1024
BslI	CCNNNNNNNGG	2 cut(s)	267, 300
BsmAI	GTCTC	2 cut(s)	833, 980
BsmFI	GGGAC	3 cut(s)	724, 911, 1024
BsmI	GAATGC	2 cut(s)	855, 875
BsnI	GGCC	2 cut(s)	425, 718
Bsp143I	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	425, 718
BspCNI	CTCAG	6 cut(s)	4, 405, 460, 559, 702, 955
BspLI	GGNNCC	4 cut(s)	444, 899, 900, 1040
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
BssT1I	CCWWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	9 cut(s)	12, 413, 447, 509, 567, 626, 689, 806, 942
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	257, 309, 800
BstKTI	GATC	7 cut(s)	20, 583, 670, 685, 756, 829, 1029
BstMAI	GTCTC	2 cut(s)	833, 980
BstMBI	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
BstMWI	GCNNNNNNNGC	3 cut(s)	613, 622, 731
BstNSI	RCATGY	1 cut(s)	788
BstV1I	GCAGC	4 cut(s)	37, 263, 628, 746
BstV2I	GAAGAC	4 cut(s)	327, 424, 485, 1020
BstXI	CCANNNNNNTGG	2 cut(s)	439, 459
Bsu36I	CCTNAGG	1 cut(s)	806
BsuRI	GGCC	2 cut(s)	425, 718
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	257, 309, 800
BtsIMutI	CAGTG	1 cut(s)	822
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr13I	GGNCC	3 cut(s)	764, 898, 1038
Csp6I	GTAC	3 cut(s)	6, 144, 918
CspCI	CAANNNNNGTGG	2 cut(s)	610, 645
CviAII	CATG	6 cut(s)	267, 526, 714, 785, 952, 1030
CviQI	GTAC	3 cut(s)	6, 144, 918
DdeI	CTNAG	9 cut(s)	12, 413, 447, 509, 567, 626, 689, 806, 942
DpnI	GATC	7 cut(s)	19, 582, 669, 684, 755, 828, 1028
DpnII	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
DraI	TTTAAA	2 cut(s)	112, 547
EaeI	YGGCCR	2 cut(s)	423, 716
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	266
Eco47I	GGWCC	3 cut(s)	764, 898, 1038
Eco57I	CTGAAG	2 cut(s)	294, 522
Eco81I	CCTNAGG	1 cut(s)	806
EcoO109I	RGGNCCY	2 cut(s)	764, 898
EcoRI	GAATTC	1 cut(s)	946
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	6 cut(s)	270, 529, 717, 788, 955, 1033
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	3 cut(s)	724, 911, 1024
FatI	CATG	6 cut(s)	266, 525, 713, 784, 951, 1029
FbaI	TGATCA	3 cut(s)	682, 753, 826
Fnu4HI	GCNGC	4 cut(s)	51, 252, 617, 735
FokI	GGATG	3 cut(s)	244, 316, 807
Fsp4HI	GCNGC	4 cut(s)	51, 252, 617, 735
FspBI	CTAG	1 cut(s)	731
GluI	GCNGC	4 cut(s)	51, 252, 617, 735
GsaI	CCCAGC	2 cut(s)	342, 651
HaeIII	GGCC	2 cut(s)	425, 718
Hin1II	CATG	6 cut(s)	270, 529, 717, 788, 955, 1033
HindIII	AAGCTT	2 cut(s)	623, 868
HinfI	GANTC	4 cut(s)	357, 485, 776, 1002
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	8 cut(s)	274, 289, 310, 414, 502, 588, 692, 945
Hpy188III	TCNNGA	1 cut(s)	977
Hpy8I	GTNNAC	1 cut(s)	640
HpyAV	CCTTC	3 cut(s)	126, 467, 755
HpyCH4V	TGCA	2 cut(s)	247, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	613, 622, 731
HpyF3I	CTNAG	9 cut(s)	12, 413, 447, 509, 567, 626, 689, 806, 942
Hsp92II	CATG	6 cut(s)	270, 529, 717, 788, 955, 1033
KflI	GGGWCCC	1 cut(s)	898
Ksp22I	TGATCA	3 cut(s)	682, 753, 826
Kzo9I	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	4 cut(s)	37, 263, 628, 746
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	731
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	7 cut(s)	19, 582, 669, 684, 755, 828, 1028
MboI	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
MfeI	CAATTG	1 cut(s)	177
MlsI	TGGCCA	2 cut(s)	425, 718
MluCI	AATT	5 cut(s)	177, 235, 696, 946, 956
MluNI	TGGCCA	2 cut(s)	425, 718
MlyI	GAGTC	1 cut(s)	494
Mox20I	TGGCCA	2 cut(s)	425, 718
MscI	TGGCCA	2 cut(s)	425, 718
MseI	TTAA	2 cut(s)	111, 546
MslI	CAYNNNNRTG	2 cut(s)	400, 457
Msp20I	TGGCCA	2 cut(s)	425, 718
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	2 cut(s)	855, 875
MwoI	GCNNNNNNNGC	3 cut(s)	613, 622, 731
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
NlaIII	CATG	6 cut(s)	270, 529, 717, 788, 955, 1033
NlaIV	GGNNCC	4 cut(s)	444, 899, 900, 1040
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	788
PciI	ACATGT	1 cut(s)	784
PctI	GAATGC	2 cut(s)	855, 875
PfeI	GAWTC	3 cut(s)	357, 776, 1002
PflFI	GACNNNGTC	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	52, 253, 618, 736
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	2 cut(s)	764, 898
PscI	ACATGT	1 cut(s)	784
Psp5II	RGGWCCY	2 cut(s)	764, 898
PspFI	CCCAGC	2 cut(s)	338, 647
PspN4I	GGNNCC	4 cut(s)	444, 899, 900, 1040
PspPI	GGNCC	3 cut(s)	764, 898, 1038
PspPPI	RGGWCCY	2 cut(s)	764, 898
PstNI	CAGNNNCTG	1 cut(s)	566
PsyI	GACNNNGTC	1 cut(s)	484
RsaI	GTAC	3 cut(s)	7, 145, 919
RsaNI	GTAC	3 cut(s)	6, 144, 918
RseI	CAYNNNNRTG	2 cut(s)	400, 457
SaqAI	TTAA	2 cut(s)	111, 546
SatI	GCNGC	4 cut(s)	51, 252, 617, 735
Sau3AI	GATC	7 cut(s)	17, 580, 667, 682, 753, 826, 1026
Sau96I	GGNCC	3 cut(s)	764, 898, 1038
SchI	GAGTC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	263
SinI	GGWCC	3 cut(s)	764, 898, 1038
SmiMI	CAYNNNNRTG	2 cut(s)	400, 457
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	177, 235, 696, 946, 956
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	731
StyI	CCWWGG	1 cut(s)	266
TaqI	TCGA	1 cut(s)	207
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	5 cut(s)	177, 235, 696, 946, 956
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	357, 776, 1002
Tru1I	TTAA	2 cut(s)	111, 546
Tru9I	TTAA	2 cut(s)	111, 546
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	4 cut(s)	50, 251, 616, 734
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	8 cut(s)	47, 330, 349, 830, 848, 912, 968, 1034
TspRI	CASTG	1 cut(s)	829
Tth111I	GACNNNGTC	1 cut(s)	484
VpaK11BI	GGWCC	3 cut(s)	764, 898, 1038
XapI	RAATTY	3 cut(s)	235, 946, 956
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.