Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Forward (+)

19762753 .. 19765306

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1123400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGGACAACAGAAAGAACAAAGAAGAGGGCTCAATTATGGAAGAAAGCAGCGGTCCATTTTGCTTTGTGTTTTGTTATGGGGTTCTTCTCAGGCTTTGCTCCAACGGGTAAGGCGTCACTTTCCGCTAGAACCGCTGCCGTGGTTTCCCCCAATAAATCACCGCACTTTCCGCCGCAGTCAGTAGAACCACCGCAAGAAGTACGGGATGCTATTAATAGAAGTTTGATAGCTACAGAGGCACAAAATGTGTCAATGGCGGCAGCAGCAGAACCTGCAAGGCATAAAAAGTACTCCGAAAACACGAGGTTCATGTCACAACAAGAAGAAGTGGAAGAAGAGAAAGAACCCGAGGTGATGACACCGAGAAGGTTCATAATCATAGTCACTGCAACAGCAACAAGCACGAAAGACATTAAGTTTAAAAGTGTGTTTTTGAAAAGACTGGCCAATACTTTAAGGTTGGTTCCTCAGCCGTTGCTTTGGGTCGTGGTGGCGCCGAAAACAGAGACGAATGAAGTGTCTGAATTGCTGAGGGGAACGGGGATTATGTATAGGCATTTGGTTTCGAGAAAGAATTTCACAGACGCAGAAGCTGAAAAGGATCGCCAGAGGAACATTGCTCTTAAGCACATTGAGAAGCACAGGATTAGTGGGATTGTTCACTTTGCCGGGCTTTCTAATGTTTACGACCTTGGCTTCTTCGACCAGCTCAGAGAAATTGAGGTTTTTGGGACATGGCCAATGGCACTACTTTCAGCAAACATAAAGAAGGTGATCATTGAAGGACCTGTATGTGATTCTTCACAAGTCATAGGATGGCATTTGAAGCAAATGAACAATGAAACTGAGACTAGGCCTCCCATTCATATCTCAAGTTTTGCGTTCAATAGTTCAATTCTTTGGGACCCCGAGAGATGGGGCCGCACTTCATCTCTTCAAAGCTCCTATCAGACGATCAAATTTGTAAAGCAAGTGGTTCTTGAAGACGAAACAAAACTAAAAGGAATCCCACCAGAAGACTGCTCCAAGATCATGCTTTGGTGTCTTCGTTTTCATGCCGCAGGAGGAGCCACGACACCACACCAAATCAATCAACCAACAAACAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

372

Amino Acids

41.88

Weight (kDa)

9.48

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	149 - 352	1.6e-60	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	496
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	2 cut(s)	447, 740
AcsI	RAATTY	2 cut(s)	577, 962
AcyI	GRCGYC	2 cut(s)	116, 497
AfaI	GTAC	2 cut(s)	204, 293
AfiI	CCNNNNNNNGG	1 cut(s)	918
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	7 cut(s)	439, 785, 829, 889, 897, 941, 986
AluBI	AGCT	4 cut(s)	233, 596, 712, 945
AluI	AGCT	4 cut(s)	233, 596, 712, 945
Alw26I	GTCTC	2 cut(s)	503, 845
AlwI	GGATC	1 cut(s)	612
AlwNI	CAGNNNCTG	2 cut(s)	275, 596
Ama87I	CYCGRG	2 cut(s)	350, 911
AoxI	GGCC	4 cut(s)	447, 740, 857, 922
ApeKI	GCWGC	4 cut(s)	50, 137, 263, 266
ApoI	RAATTY	2 cut(s)	577, 962
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	4 cut(s)	55, 788, 907, 922
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	3 cut(s)	153, 367, 787
AvaI	CYCGRG	2 cut(s)	350, 911
AvaII	GGWCC	3 cut(s)	55, 788, 907
BalI	TGGCCA	2 cut(s)	449, 742
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	304
BbsI	GAAGAC	3 cut(s)	993, 1026, 1040
BbvCI	CCTCAGC	2 cut(s)	471, 533
BbvI	GCAGC	4 cut(s)	62, 124, 275, 278
BccI	CCATC	2 cut(s)	813, 912
BceAI	ACGGC	2 cut(s)	125, 460
BclI	TGATCA	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	503, 845
BfaI	CTAG	2 cut(s)	129, 855
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	500
BfrI	CTTAAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	8 cut(s)	51, 138, 176, 261, 264, 267, 925, 1062
BlsI	GCNGC	8 cut(s)	52, 139, 177, 262, 265, 268, 926, 1063
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	3 cut(s)	55, 788, 907
BmeT110I	CYCGRG	2 cut(s)	350, 911
BmgT120I	GGNCC	4 cut(s)	55, 788, 907, 922
BmiI	GGNNCC	6 cut(s)	468, 498, 908, 909, 923, 1072
BmrFI	CCNGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	3 cut(s)	993, 1026, 1040
Bpu10I	CCTNAGC	2 cut(s)	471, 533
BpuEI	CTTGAG	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	673
BsaHI	GRCGYC	2 cut(s)	116, 497
BsaJI	CCNNGG	3 cut(s)	141, 351, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	141, 351, 694
BseGI	GGATG	2 cut(s)	214, 824
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	5 cut(s)	105, 485, 524, 727, 840
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	1083
BseXI	GCAGC	4 cut(s)	62, 124, 275, 278
BshFI	GGCC	4 cut(s)	449, 742, 859, 924
BshNI	GGYRCC	1 cut(s)	496
BsiHKCI	CYCGRG	2 cut(s)	350, 911
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	3 cut(s)	19, 748, 920
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	503, 845
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	3 cut(s)	19, 748, 920
BsnI	GGCC	4 cut(s)	449, 742, 859, 924
BsoBI	CYCGRG	2 cut(s)	350, 911
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	604, 777, 957, 1032
BspANI	GGCC	4 cut(s)	449, 742, 859, 924
BspCNI	CTCAG	5 cut(s)	104, 484, 525, 726, 841
BspLI	GGNNCC	6 cut(s)	468, 498, 908, 909, 923, 1072
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	496
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	141, 351, 694
BssMI	GATC	4 cut(s)	604, 777, 957, 1032
BssNI	GRCGYC	2 cut(s)	116, 497
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	694
Bst2BI	CACGAG	1 cut(s)	304
Bst6I	CTCTTC	3 cut(s)	20, 333, 942
BstACI	GRCGYC	2 cut(s)	116, 497
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDEI	CTNAG	5 cut(s)	91, 471, 533, 713, 849
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	214, 824
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	4 cut(s)	607, 780, 960, 1035
BstMAI	GTCTC	2 cut(s)	503, 845
BstMBI	GATC	4 cut(s)	604, 777, 957, 1032
BstMWI	GCNNNNNNNGC	7 cut(s)	134, 172, 239, 266, 275, 829, 1070
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	62, 124, 275, 278
BstV2I	GAAGAC	3 cut(s)	993, 1026, 1040
BsuRI	GGCC	4 cut(s)	449, 742, 859, 924
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	214, 824
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	283
CaiI	CAGNNNCTG	2 cut(s)	275, 596
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	4 cut(s)	55, 788, 907, 922
CseI	GACGC	2 cut(s)	105, 596
Csp6I	GTAC	2 cut(s)	203, 292
CviAII	CATG	4 cut(s)	313, 738, 1036, 1058
CviQI	GTAC	2 cut(s)	203, 292
DdeI	CTNAG	5 cut(s)	91, 471, 533, 713, 849
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	4 cut(s)	606, 779, 959, 1034
DpnII	GATC	4 cut(s)	604, 777, 957, 1032
DraI	TTTAAA	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	447, 740
Eam1104I	CTCTTC	3 cut(s)	20, 333, 942
EarI	CTCTTC	3 cut(s)	20, 333, 942
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	859
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	55, 788, 907
Eco88I	CYCGRG	2 cut(s)	350, 911
EcoO109I	RGGNCCY	2 cut(s)	788, 907
EcoT14I	CCWWGG	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	34
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	694
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	4 cut(s)	316, 741, 1039, 1061
FalI	AAGNNNNNCTT	2 cut(s)	966, 998
FaqI	GGGAC	3 cut(s)	19, 748, 920
FatI	CATG	4 cut(s)	312, 737, 1035, 1057
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	8 cut(s)	51, 138, 176, 261, 264, 267, 925, 1062
FokI	GGATG	2 cut(s)	221, 831
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	8 cut(s)	51, 138, 176, 261, 264, 267, 925, 1062
FspBI	CTAG	2 cut(s)	129, 855
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	8 cut(s)	51, 138, 176, 261, 264, 267, 925, 1062
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	4 cut(s)	449, 742, 859, 924
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	2 cut(s)	105, 596
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	2 cut(s)	116, 497
Hin1II	CATG	4 cut(s)	316, 741, 1039, 1061
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	2 cut(s)	800, 1008
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	3 cut(s)	153, 367, 787
Hpy166II	GTNNAC	2 cut(s)	664, 688
Hpy188I	TCNGA	4 cut(s)	298, 526, 716, 954
Hpy188III	TCNNGA	2 cut(s)	570, 983
Hpy8I	GTNNAC	2 cut(s)	664, 688
HpyAV	CCTTC	3 cut(s)	363, 766, 779
HpyCH4V	TGCA	2 cut(s)	278, 392
HpyF10VI	GCNNNNNNNGC	7 cut(s)	134, 172, 239, 266, 275, 829, 1070
HpyF3I	CTNAG	5 cut(s)	91, 471, 533, 713, 849
Hsp92I	GRCGYC	2 cut(s)	116, 497
Hsp92II	CATG	4 cut(s)	316, 741, 1039, 1061
HspAI	GCGC	1 cut(s)	497
KasI	GGCGCC	1 cut(s)	496
KflI	GGGWCCC	1 cut(s)	907
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	4 cut(s)	604, 777, 957, 1032
LmnI	GCTCC	4 cut(s)	106, 950, 1031, 1070
Lsp1109I	GCAGC	4 cut(s)	62, 124, 275, 278
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	129, 855
MaeIII	GTNAC	3 cut(s)	117, 315, 385
MalI	GATC	4 cut(s)	606, 779, 959, 1034
MboI	GATC	4 cut(s)	604, 777, 957, 1032
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	2 cut(s)	449, 742
MluCI	AATT	7 cut(s)	35, 527, 577, 720, 897, 962, 1111
MluNI	TGGCCA	2 cut(s)	449, 742
Mly113I	GGCGCC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	2 cut(s)	449, 742
MscI	TGGCCA	2 cut(s)	449, 742
MseI	TTAA	6 cut(s)	216, 417, 423, 458, 627, 1114
Msp20I	TGGCCA	2 cut(s)	449, 742
MspA1I	CMGCKG	2 cut(s)	53, 137
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	7 cut(s)	134, 172, 239, 266, 275, 829, 1070
NarI	GGCGCC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	4 cut(s)	604, 777, 957, 1032
NlaIII	CATG	4 cut(s)	316, 741, 1039, 1061
NlaIV	GGNNCC	6 cut(s)	468, 498, 908, 909, 923, 1072
NmuCI	GTSAC	3 cut(s)	117, 315, 385
PceI	AGGCCT	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	800, 1008
PkrI	GCNGC	8 cut(s)	52, 139, 177, 262, 265, 268, 926, 1063
PluTI	GGCGCC	1 cut(s)	500
PpuMI	RGGWCCY	2 cut(s)	788, 907
PshBI	ATTAAT	1 cut(s)	216
Psp5II	RGGWCCY	2 cut(s)	788, 907
PspN4I	GGNNCC	6 cut(s)	468, 498, 908, 909, 923, 1072
PspPI	GGNCC	4 cut(s)	55, 788, 907, 922
PspPPI	RGGWCCY	2 cut(s)	788, 907
PstNI	CAGNNNCTG	2 cut(s)	275, 596
RsaI	GTAC	2 cut(s)	204, 293
RsaNI	GTAC	2 cut(s)	203, 292
SaqAI	TTAA	6 cut(s)	216, 417, 423, 458, 627, 1114
SatI	GCNGC	8 cut(s)	51, 138, 176, 261, 264, 267, 925, 1062
Sau3AI	GATC	4 cut(s)	604, 777, 957, 1032
Sau96I	GGNCC	4 cut(s)	55, 788, 907, 922
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	234
SfoI	GGCGCC	1 cut(s)	498
SinI	GGWCC	3 cut(s)	55, 788, 907
SmlI	CTYRAG	2 cut(s)	626, 874
SmoI	CTYRAG	2 cut(s)	626, 874
Sse9I	AATT	7 cut(s)	35, 527, 577, 720, 897, 962, 1111
SseBI	AGGCCT	1 cut(s)	859
SspDI	GGCGCC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	129, 855
StuI	AGGCCT	1 cut(s)	859
StyD4I	CCNGG	1 cut(s)	671
StyI	CCWWGG	1 cut(s)	694
TaqI	TCGA	2 cut(s)	569, 705
TasI	AATT	7 cut(s)	35, 527, 577, 720, 897, 962, 1111
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	4 cut(s)	178, 263, 927, 1064
TfiI	GAWTC	2 cut(s)	800, 1008
Tru1I	TTAA	6 cut(s)	216, 417, 423, 458, 627, 1114
Tru9I	TTAA	6 cut(s)	216, 417, 423, 458, 627, 1114
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	3 cut(s)	117, 315, 385
TseI	GCWGC	4 cut(s)	50, 137, 263, 266
Tsp45I	GTSAC	3 cut(s)	117, 315, 385
TspDTI	ATGAA	8 cut(s)	301, 364, 531, 851, 857, 858, 921, 1046
TspRI	CASTG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	3 cut(s)	55, 788, 907
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	2 cut(s)	577, 962
XspI	CTAG	2 cut(s)	129, 855
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.