Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Forward (+)

35501500 .. 35505266

Gene Structure 3767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTACAACAGAGAGATCAAGAAAGAAGGTTCAACTATGGAAGAAAGCTGCTGTCCATTTTGCTTTGTGTTTTGTTATGGGATTCTTCACAGGGTTTGCTCCAACATTTAAACCTTCCATCTTTTCTGAACCTGCTGTGAGTTCATCAAAGAAAATAGAGTTTTCGCCTCAACCAGTAGAACCGCCGCAACAAGTCGCAAATTTCAATAGAAGTCCGATAGCAGAAGCAGAAAAATTGGAAATGGCAGCATCCTCCCCTCCAAATTCTGAAGAAACTTACTCCGAATCCGAAAGGAGGATGTCAGAAGATGAAGAAGAAGAAGTGAAAGAACCCAATTTGACACCAAGAAGGTTTATTATCATAGTCACACCAACAAGCACCAAAAACCCACTAAAATGTGTGTTTCTGAGAAGATTGGCAAACACCATAAAGTTGGTTCCTCAGCCATTGTTGTGGATTGTGGTGGAAGGGAAGACCGAGTCGAATGAGGTTTCTGAAGTGCTTAGGAAAACTGGTGTTATGTATAGGCATTTGGTTTTCAAAGAGAACTTCACAGATACTGAGGCTGAAGTGGATCATCAGAGGAATGTTGCTCTTAAGCACATTGAGCAGCACAAGCTTAGTGGGATTGTTCACTTTGCTGGGCTTTCCAATGTTTATGATCTTGGCTTCTTTGATCAGCTCAGAGAAATTGAGGTGTTTGGGACATGGCCAATGGCGCTACTAGCAGCAAACAAGAAAAAAGTGATCATTGAAGGACCTGTATGTGATTCTTCACAAGTGATAGGATGGCATATCCTAAGGAAAATGAACAATACTGATCAAACAGATGATACTAATAGACTTCGCATTCATATTTCAAGCTTTGCATTCAATAGCTCAATTCTTTGGGACCCCGAAAGATGGGGTCGCACTTCATCACTTCAAAGCACCTCTCAGAATTCAATGAAATTTGTAAAGCAAGTGGTTCTTGAAGATGAGACAAAACTAAAGGGAATCCCACCAGAAGACTGCTCAAAGATCATGCTTTGGTCTCTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

349

Amino Acids

39.69

Weight (kDa)

7.13

Isoelectric Point (pI)

66.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	140 - 347	4.3e-60	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	2 cut(s)	185, 188
AclWI	GGATC	1 cut(s)	585
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	4 cut(s)	202, 265, 943, 953
AcuI	CTGAAG	3 cut(s)	291, 519, 591
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	297, 906
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	9 cut(s)	35, 208, 544, 758, 864, 877, 929, 948, 977
AluBI	AGCT	5 cut(s)	50, 622, 685, 867, 882
AluI	AGCT	5 cut(s)	50, 622, 685, 867, 882
Alw26I	GTCTC	2 cut(s)	977, 1041
AlwI	GGATC	1 cut(s)	585
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	4 cut(s)	50, 248, 613, 731
ApoI	RAATTY	4 cut(s)	202, 265, 943, 953
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	2 cut(s)	761, 895
AvaII	GGWCC	2 cut(s)	761, 895
AxyI	CCTNAGG	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	715
BbsI	GAAGAC	2 cut(s)	482, 1017
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	37, 260, 625, 743
BccI	CCATC	3 cut(s)	128, 786, 900
BclI	TGATCA	3 cut(s)	679, 750, 823
BcoDI	GTCTC	2 cut(s)	977, 1041
BfaI	CTAG	1 cut(s)	728
BfoI	RGCGCY	1 cut(s)	725
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	5 cut(s)	51, 188, 249, 614, 732
BlsI	GCNGC	5 cut(s)	52, 189, 250, 615, 733
Bme18I	GGWCC	2 cut(s)	761, 895
BmgT120I	GGNCC	2 cut(s)	761, 895
BmiI	GGNNCC	3 cut(s)	441, 896, 897
BmsI	GCATC	1 cut(s)	260
BpiI	GAAGAC	2 cut(s)	482, 1017
Bpu10I	CCTNAGC	2 cut(s)	444, 506
BsaI	GGTCTC	1 cut(s)	1041
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 906
Bse1I	ACTGG	2 cut(s)	176, 520
Bse21I	CCTNAGG	1 cut(s)	803
BseGI	GGATG	3 cut(s)	251, 306, 797
BseLI	CCNNNNNNNGG	2 cut(s)	297, 906
BseMII	CTCAG	5 cut(s)	401, 458, 555, 700, 953
BseNI	ACTGG	2 cut(s)	176, 520
BseXI	GCAGC	4 cut(s)	37, 260, 625, 743
BseYI	CCCAGC	1 cut(s)	644
BshFI	GGCC	1 cut(s)	715
BslFI	GGGAC	2 cut(s)	721, 908
BslI	CCNNNNNNNGG	2 cut(s)	297, 906
BsmAI	GTCTC	2 cut(s)	977, 1041
BsmFI	GGGAC	2 cut(s)	721, 908
BsmI	GAATGC	2 cut(s)	852, 872
BsnI	GGCC	1 cut(s)	715
Bso31I	GGTCTC	1 cut(s)	1041
Bsp143I	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
BspACI	CCGC	2 cut(s)	185, 188
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	5 cut(s)	402, 457, 556, 699, 952
BspLI	GGNNCC	3 cut(s)	441, 896, 897
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	1041
BsrI	ACTGG	2 cut(s)	176, 520
BssMI	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
Bst6I	CTCTTC	1 cut(s)	1044
BstAFI	CTTAAG	1 cut(s)	599
BstDEI	CTNAG	8 cut(s)	410, 444, 506, 564, 623, 686, 803, 939
BstF5I	GGATG	3 cut(s)	251, 306, 797
BstH2I	RGCGCY	1 cut(s)	725
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	7 cut(s)	20, 580, 667, 682, 753, 826, 1026
BstMAI	GTCTC	2 cut(s)	977, 1041
BstMBI	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
BstMWI	GCNNNNNNNGC	4 cut(s)	610, 619, 721, 728
BstV1I	GCAGC	4 cut(s)	37, 260, 625, 743
BstV2I	GAAGAC	2 cut(s)	482, 1017
BstXI	CCANNNNNNTGG	2 cut(s)	436, 456
Bsu36I	CCTNAGG	1 cut(s)	803
BsuRI	GGCC	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	251, 306, 797
BveI	ACCTGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	724
Cfr13I	GGNCC	2 cut(s)	761, 895
Csp6I	GTAC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	2 cut(s)	711, 1027
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	8 cut(s)	410, 444, 506, 564, 623, 686, 803, 939
DpnI	GATC	7 cut(s)	19, 579, 666, 681, 752, 825, 1025
DpnII	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
DraI	TTTAAA	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	713
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco31I	GGTCTC	1 cut(s)	1041
Eco47I	GGWCC	2 cut(s)	761, 895
Eco57I	CTGAAG	3 cut(s)	291, 519, 591
Eco81I	CCTNAGG	1 cut(s)	803
EcoO109I	RGGNCCY	2 cut(s)	761, 895
EcoRI	GAATTC	1 cut(s)	943
FaeI	CATG	2 cut(s)	714, 1030
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	2 cut(s)	721, 908
FatI	CATG	2 cut(s)	710, 1026
FbaI	TGATCA	3 cut(s)	679, 750, 823
Fnu4HI	GCNGC	5 cut(s)	51, 188, 249, 614, 732
FokI	GGATG	3 cut(s)	238, 313, 804
Fsp4HI	GCNGC	5 cut(s)	51, 188, 249, 614, 732
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	5 cut(s)	51, 188, 249, 614, 732
GsaI	CCCAGC	1 cut(s)	648
HaeII	RGCGCY	1 cut(s)	725
HaeIII	GGCC	1 cut(s)	715
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	2 cut(s)	714, 1030
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HindIII	AAGCTT	2 cut(s)	620, 865
HinfI	GANTC	5 cut(s)	84, 287, 482, 773, 999
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188III	TCNNGA	2 cut(s)	21, 974
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	5 cut(s)	22, 126, 345, 464, 752
HpyCH4V	TGCA	1 cut(s)	872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	610, 619, 721, 728
HpyF3I	CTNAG	8 cut(s)	410, 444, 506, 564, 623, 686, 803, 939
Hsp92II	CATG	2 cut(s)	714, 1030
HspAI	GCGC	1 cut(s)	722
KflI	GGGWCCC	1 cut(s)	895
Ksp22I	TGATCA	3 cut(s)	679, 750, 823
Kzo9I	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	7 cut(s)	78, 147, 189, 501, 630, 777, 1020
Lsp1109I	GCAGC	4 cut(s)	37, 260, 625, 743
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	728
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	7 cut(s)	19, 579, 666, 681, 752, 825, 1025
MboI	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
MlsI	TGGCCA	1 cut(s)	715
MluCI	AATT	8 cut(s)	202, 236, 265, 337, 693, 885, 943, 953
MluNI	TGGCCA	1 cut(s)	715
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	715
MseI	TTAA	3 cut(s)	111, 600, 1045
MslI	CAYNNNNRTG	2 cut(s)	397, 454
Msp20I	TGGCCA	1 cut(s)	715
MspCI	CTTAAG	1 cut(s)	599
Mva1269I	GAATGC	2 cut(s)	852, 872
MwoI	GCNNNNNNNGC	4 cut(s)	610, 619, 721, 728
NdeII	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
NlaIII	CATG	2 cut(s)	714, 1030
NlaIV	GGNNCC	3 cut(s)	441, 896, 897
NmuCI	GTSAC	1 cut(s)	367
PctI	GAATGC	2 cut(s)	852, 872
PfeI	GAWTC	4 cut(s)	84, 287, 773, 999
PflFI	GACNNNGTC	1 cut(s)	481
PkrI	GCNGC	5 cut(s)	52, 189, 250, 615, 733
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	2 cut(s)	761, 895
Psp5II	RGGWCCY	2 cut(s)	761, 895
PspFI	CCCAGC	1 cut(s)	644
PspN4I	GGNNCC	3 cut(s)	441, 896, 897
PspPI	GGNCC	2 cut(s)	761, 895
PspPPI	RGGWCCY	2 cut(s)	761, 895
PstNI	CAGNNNCTG	1 cut(s)	563
PsyI	GACNNNGTC	1 cut(s)	481
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	397, 454
SaqAI	TTAA	3 cut(s)	111, 600, 1045
SatI	GCNGC	5 cut(s)	51, 188, 249, 614, 732
Sau3AI	GATC	7 cut(s)	17, 577, 664, 679, 750, 823, 1023
Sau96I	GGNCC	2 cut(s)	761, 895
SchI	GAGTC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	2 cut(s)	761, 895
SmiMI	CAYNNNNRTG	2 cut(s)	397, 454
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	8 cut(s)	202, 236, 265, 337, 693, 885, 943, 953
SsiI	CCGC	2 cut(s)	185, 188
SspMI	CTAG	1 cut(s)	728
TaqI	TCGA	1 cut(s)	485
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	8 cut(s)	202, 236, 265, 337, 693, 885, 943, 953
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	84, 287, 773, 999
Tru1I	TTAA	3 cut(s)	111, 600, 1045
Tru9I	TTAA	3 cut(s)	111, 600, 1045
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	50, 248, 613, 731
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	7 cut(s)	135, 327, 827, 845, 909, 965, 1031
Tth111I	GACNNNGTC	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	2 cut(s)	761, 895
XapI	RAATTY	4 cut(s)	202, 265, 943, 953
XspI	CTAG	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.