Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Forward (+)

14713998 .. 14716467

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCATTCCGACATCATATATTATACTGACCAAAACCCACCGAAACTCAGTAACCCTAATACCAAATTTAATAGCTTTTTCAAAGAAATGGGGACCACAGAAAGAACAAAGAAGAGGGCTCAATTATGGAAGAAAGCAGCGGTCCATTTTGCTTTGTGTTTTGTTATGGGGTTCTTCTCAGGCTTTGCTCCAACGGGTAAGGCTTCACTTTCCGCTAGAACCGCTGCCGTGGTTTCCTCCAATAAACCACAGCACTTTCCGTTGCAGTCAGTAGAACCACCGCAAGAAGTACCGGATGCTATTAATAGAAGTTTGATAGCTACAGAGGCACAGAATGTGTCAATGGCGGCAGCAGCAGAACCTGCAAGGCATAAAAAGTACTCCGAAAACACGAGGTTCATGTCACAACATGAAGAAGTGGAAGAAGAGAAAGAACTCGAGGTGATGACACCGAGAAGGTTCATAATCATAGTCACTGCAACAGCAACAAGCACGAAAGACATTAAGTTTAAAAGTGTGTTTTTGAGAAGACTGGCCAATACTTTAAGGTTGGTTCCTCAGCCGTTGCTTTGGGTTGTGGTGGCGCCGAAAACGGAGACGAATGAAGTGTCTGAATTGCTGAGGGGAACGGGGATTATGTACAGGCATTTGGTTTCGAGAAAGAATTTCACAGACGCAGAAGCTGAAAGGGATCGACAGAGGAACATTGCTCTTAAGCACATTGAGAAGCACAGGATTAGTGGGATTGTTCACTTTGCCGGGCTTTCTAATGTTTACGATCTTGGCTTCTTCGACCAGCTCAGAGAAATTGAGGTTTTTGGGACATGGCCAATGGCACTACTTGAAGCAAACCGAAAGAAGGTGATCATTGAAGGACCTGTATGTGATTCTTCACAAGTCATAGGATGGCATTTGAAGCAAATGAACAATGAAACTGAGACTAGGCCTCCCATTCATATCTCAAGTTTTGCTTTCAATAGTTCAATTCTTTGGGACCCCGAGAGATGGGGGCGCACTTCATCTCTTCAAAGCTCCTATCAGACGATCAAATTTGTCAAGCAAGTGGTTCTTGAAGACGAAACAAAACTGAAAGGAATCCCACCAGAAGACTGCTCCAAGATCATGCTTTGGTGTCTTCGTTTTCATGCCGCAGGACCATACCAAATCAATCAACCAACAAACGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

397

Amino Acids

45.09

Weight (kDa)

9.27

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	178 - 381	2.5e-60	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	6 cut(s)	140, 213, 222, 281, 347, 1149
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	2 cut(s)	534, 827
AcsI	RAATTY	3 cut(s)	65, 664, 1049
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	3 cut(s)	291, 380, 641
AfiI	CCNNNNNNNGG	3 cut(s)	859, 1005, 1181
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	8 cut(s)	82, 845, 872, 916, 976, 984, 1028, 1073
AluBI	AGCT	5 cut(s)	75, 320, 683, 799, 1032
AluI	AGCT	5 cut(s)	75, 320, 683, 799, 1032
Alw26I	GTCTC	2 cut(s)	590, 932
AlwI	GGATC	1 cut(s)	699
AlwNI	CAGNNNCTG	2 cut(s)	362, 683
Ama87I	CYCGRG	2 cut(s)	437, 998
AoxI	GGCC	3 cut(s)	534, 827, 944
ApeKI	GCWGC	4 cut(s)	137, 224, 350, 353
ApoI	RAATTY	3 cut(s)	65, 664, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	586, 1014
AspS9I	GGNCC	5 cut(s)	93, 142, 875, 994, 1154
AsuC2I	CCSGG	1 cut(s)	760
AsuHPI	GGTGA	2 cut(s)	454, 874
AvaI	CYCGRG	2 cut(s)	437, 998
AvaII	GGWCC	5 cut(s)	93, 142, 875, 994, 1154
BalI	TGGCCA	2 cut(s)	536, 829
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	4 cut(s)	535, 1080, 1113, 1127
BbvCI	CCTCAGC	2 cut(s)	558, 620
BbvI	GCAGC	4 cut(s)	149, 211, 362, 365
BccI	CCATC	2 cut(s)	900, 999
BceAI	ACGGC	2 cut(s)	212, 547
BclI	TGATCA	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	590, 932
BfaI	CTAG	2 cut(s)	216, 942
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	587
BfrI	CTTAAG	1 cut(s)	713
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	6 cut(s)	138, 225, 348, 351, 354, 1149
BlsI	GCNGC	6 cut(s)	139, 226, 349, 352, 355, 1150
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	760
Bme18I	GGWCC	5 cut(s)	93, 142, 875, 994, 1154
BmeT110I	CYCGRG	2 cut(s)	437, 998
BmgT120I	GGNCC	5 cut(s)	93, 142, 875, 994, 1154
BmiI	GGNNCC	5 cut(s)	94, 555, 585, 995, 996
BmrFI	CCNGG	1 cut(s)	760
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	4 cut(s)	535, 1080, 1113, 1127
Bpu10I	CCTNAGC	2 cut(s)	558, 620
BpuEI	CTTGAG	1 cut(s)	946
BpuMI	CCSGG	1 cut(s)	760
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	859, 1005, 1181
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	301, 911
BseLI	CCNNNNNNNGG	3 cut(s)	859, 1005, 1181
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	6 cut(s)	61, 192, 572, 611, 814, 927
BseNI	ACTGG	1 cut(s)	537
BseXI	GCAGC	4 cut(s)	149, 211, 362, 365
BshFI	GGCC	3 cut(s)	536, 829, 946
BshNI	GGYRCC	1 cut(s)	583
BsiHKCI	CYCGRG	2 cut(s)	437, 998
BsiSI	CCGG	2 cut(s)	293, 759
BslFI	GGGAC	3 cut(s)	106, 835, 1007
BslI	CCNNNNNNNGG	3 cut(s)	859, 1005, 1181
BsmAI	GTCTC	2 cut(s)	590, 932
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	3 cut(s)	106, 835, 1007
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	536, 829, 946
BsoBI	CYCGRG	2 cut(s)	437, 998
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	5 cut(s)	691, 778, 864, 1044, 1119
BspACI	CCGC	6 cut(s)	140, 213, 222, 281, 347, 1149
BspANI	GGCC	3 cut(s)	536, 829, 946
BspCNI	CTCAG	6 cut(s)	60, 191, 571, 612, 813, 928
BspLI	GGNNCC	5 cut(s)	94, 555, 585, 995, 996
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	699
BspT107I	GGYRCC	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	705
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	5 cut(s)	691, 778, 864, 1044, 1119
BssNI	GRCGYC	1 cut(s)	584
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst6I	CTCTTC	3 cut(s)	107, 420, 1029
BstACI	GRCGYC	1 cut(s)	584
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	639
BstDEI	CTNAG	6 cut(s)	47, 178, 558, 620, 800, 936
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	301, 911
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	586, 1014
BstKTI	GATC	5 cut(s)	694, 781, 867, 1047, 1122
BstMAI	GTCTC	2 cut(s)	590, 932
BstMBI	GATC	5 cut(s)	691, 778, 864, 1044, 1119
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 326, 353, 362, 916
BstSCI	CCNGG	1 cut(s)	758
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	149, 211, 362, 365
BstV2I	GAAGAC	4 cut(s)	535, 1080, 1113, 1127
BsuRI	GGCC	3 cut(s)	536, 829, 946
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	301, 911
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	370
CaiI	CAGNNNCTG	2 cut(s)	362, 683
CfoI	GCGC	2 cut(s)	586, 1014
Cfr13I	GGNCC	5 cut(s)	93, 142, 875, 994, 1154
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	3 cut(s)	290, 379, 640
CviAII	CATG	5 cut(s)	400, 410, 825, 1123, 1145
CviQI	GTAC	3 cut(s)	290, 379, 640
DdeI	CTNAG	6 cut(s)	47, 178, 558, 620, 800, 936
DinI	GGCGCC	1 cut(s)	585
DpnI	GATC	5 cut(s)	693, 780, 866, 1046, 1121
DpnII	GATC	5 cut(s)	691, 778, 864, 1044, 1119
DraI	TTTAAA	1 cut(s)	511
EaeI	YGGCCR	2 cut(s)	534, 827
Eam1104I	CTCTTC	3 cut(s)	107, 420, 1029
EarI	CTCTTC	3 cut(s)	107, 420, 1029
Eco147I	AGGCCT	1 cut(s)	946
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	5 cut(s)	93, 142, 875, 994, 1154
Eco88I	CYCGRG	2 cut(s)	437, 998
EcoO109I	RGGNCCY	2 cut(s)	875, 994
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	585
EheI	GGCGCC	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	5 cut(s)	403, 413, 828, 1126, 1148
FalI	AAGNNNNNCTT	4 cut(s)	955, 987, 1053, 1085
FaqI	GGGAC	3 cut(s)	106, 835, 1007
FatI	CATG	5 cut(s)	399, 409, 824, 1122, 1144
FbaI	TGATCA	1 cut(s)	864
Fnu4HI	GCNGC	6 cut(s)	138, 225, 348, 351, 354, 1149
FokI	GGATG	2 cut(s)	308, 918
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	6 cut(s)	138, 225, 348, 351, 354, 1149
FspBI	CTAG	2 cut(s)	216, 942
GlaI	GCGC	2 cut(s)	585, 1013
GluI	GCNGC	6 cut(s)	138, 225, 348, 351, 354, 1149
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	536, 829, 946
HapII	CCGG	2 cut(s)	293, 759
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	2 cut(s)	586, 1014
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	5 cut(s)	403, 413, 828, 1126, 1148
Hin6I	GCGC	2 cut(s)	584, 1012
HinP1I	GCGC	2 cut(s)	584, 1012
HinfI	GANTC	2 cut(s)	887, 1095
HpaII	CCGG	2 cut(s)	293, 759
HphI	GGTGA	2 cut(s)	454, 874
Hpy166II	GTNNAC	2 cut(s)	751, 775
Hpy188I	TCNGA	5 cut(s)	10, 385, 613, 803, 1041
Hpy188III	TCNNGA	2 cut(s)	657, 1070
Hpy8I	GTNNAC	2 cut(s)	751, 775
HpyAV	CCTTC	3 cut(s)	450, 853, 866
HpyCH4V	TGCA	4 cut(s)	4, 265, 365, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 326, 353, 362, 916
HpyF3I	CTNAG	6 cut(s)	47, 178, 558, 620, 800, 936
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	5 cut(s)	403, 413, 828, 1126, 1148
HspAI	GCGC	2 cut(s)	584, 1012
KasI	GGCGCC	1 cut(s)	583
KflI	GGGWCCC	1 cut(s)	994
Ksp22I	TGATCA	1 cut(s)	864
Kzo9I	GATC	5 cut(s)	691, 778, 864, 1044, 1119
LmnI	GCTCC	3 cut(s)	193, 1037, 1118
Lsp1109I	GCAGC	4 cut(s)	149, 211, 362, 365
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	216, 942
MaeIII	GTNAC	3 cut(s)	50, 402, 472
MalI	GATC	5 cut(s)	693, 780, 866, 1046, 1121
MboI	GATC	5 cut(s)	691, 778, 864, 1044, 1119
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	2 cut(s)	536, 829
MluCI	AATT	8 cut(s)	65, 122, 614, 664, 807, 984, 1049, 1186
MluNI	TGGCCA	2 cut(s)	536, 829
Mly113I	GGCGCC	1 cut(s)	584
MmeI	TCCRAC	2 cut(s)	33, 215
Mox20I	TGGCCA	2 cut(s)	536, 829
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	2 cut(s)	536, 829
MseI	TTAA	7 cut(s)	69, 303, 504, 510, 545, 714, 1189
Msp20I	TGGCCA	2 cut(s)	536, 829
MspA1I	CMGCKG	2 cut(s)	140, 224
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	2 cut(s)	293, 759
MspR9I	CCNGG	1 cut(s)	760
Mva1269I	GAATGC	1 cut(s)	4
MwoI	GCNNNNNNNGC	5 cut(s)	221, 326, 353, 362, 916
NarI	GGCGCC	1 cut(s)	584
NciI	CCSGG	1 cut(s)	760
NdeII	GATC	5 cut(s)	691, 778, 864, 1044, 1119
NlaIII	CATG	5 cut(s)	403, 413, 828, 1126, 1148
NlaIV	GGNNCC	5 cut(s)	94, 555, 585, 995, 996
NmuCI	GTSAC	2 cut(s)	402, 472
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	946
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	887, 1095
PkrI	GCNGC	6 cut(s)	139, 226, 349, 352, 355, 1150
PluTI	GGCGCC	1 cut(s)	587
PpuMI	RGGWCCY	2 cut(s)	875, 994
PshBI	ATTAAT	1 cut(s)	303
Psp5II	RGGWCCY	2 cut(s)	875, 994
PspN4I	GGNNCC	5 cut(s)	94, 555, 585, 995, 996
PspPI	GGNCC	5 cut(s)	93, 142, 875, 994, 1154
PspPPI	RGGWCCY	2 cut(s)	875, 994
PspXI	VCTCGAGB	1 cut(s)	437
PstNI	CAGNNNCTG	2 cut(s)	362, 683
RsaI	GTAC	3 cut(s)	291, 380, 641
RsaNI	GTAC	3 cut(s)	290, 379, 640
SaqAI	TTAA	7 cut(s)	69, 303, 504, 510, 545, 714, 1189
SatI	GCNGC	6 cut(s)	138, 225, 348, 351, 354, 1149
Sau3AI	GATC	5 cut(s)	691, 778, 864, 1044, 1119
Sau96I	GGNCC	5 cut(s)	93, 142, 875, 994, 1154
ScaI	AGTACT	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	760
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	321
SfoI	GGCGCC	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	5 cut(s)	93, 142, 875, 994, 1154
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	437, 713, 961
SmoI	CTYRAG	3 cut(s)	437, 713, 961
Sse9I	AATT	8 cut(s)	65, 122, 614, 664, 807, 984, 1049, 1186
SseBI	AGGCCT	1 cut(s)	946
SsiI	CCGC	6 cut(s)	140, 213, 222, 281, 347, 1149
SspDI	GGCGCC	1 cut(s)	583
SspMI	CTAG	2 cut(s)	216, 942
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	1 cut(s)	758
TaqI	TCGA	4 cut(s)	438, 656, 694, 792
TasI	AATT	8 cut(s)	65, 122, 614, 664, 807, 984, 1049, 1186
TatI	WGTACW	2 cut(s)	378, 639
TauI	GCSGC	2 cut(s)	350, 1151
TfiI	GAWTC	2 cut(s)	887, 1095
Tru1I	TTAA	7 cut(s)	69, 303, 504, 510, 545, 714, 1189
Tru9I	TTAA	7 cut(s)	69, 303, 504, 510, 545, 714, 1189
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	2 cut(s)	402, 472
TseI	GCWGC	4 cut(s)	137, 224, 350, 353
Tsp45I	GTSAC	2 cut(s)	402, 472
TspDTI	ATGAA	9 cut(s)	388, 426, 451, 618, 938, 944, 945, 1008, 1133
TspGWI	ACGGA	2 cut(s)	249, 608
TspRI	CASTG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	5 cut(s)	93, 142, 875, 994, 1154
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	3 cut(s)	65, 664, 1049
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	2 cut(s)	216, 942
ZrmI	AGTACT	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.