Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Reverse (-)

23901116 .. 23904120

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G239800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGGATCACAGAAAGATCAAAGAAGAGGGTCCACCTATGGAAGAAAGCTGTGGTCCATTTTGCTTTGTGTTTTGTCATGGGGTTCTTCACAGGATTTGCTCCAACGGGTAAGGCTTCGATTTTCGCTAGACCTGCTGTGATCTCCACAAATATATCAGACCACCTTTCGCCGCGGCCAGTAGAATCGCCTCAACAAGTAGCAGCAGACGTTAATAGAAGTTTGATGGCAGAGACACCAATTGTGGCAATGGCAGCTGCCCCTGCAAGGCCTAAAGAGCATACCGAAAACTCTAGATTCATATCAGAGAAAGAAGAACAACAAGAAGAAGAGAAAGAACCCAAGTTGACACCAAGAAGGTTCATAATCATTGTGACTCCAACAAGCACAAAAAACAAATTTAAAAGTGTGCTTTTGAGAAGATTGGCTAACACTATAAGATTGGTTCCTCAGCCATTGTTGTGGATTGTGGTGGAAGCAAAAACAGAATCAAATGGAGTGTCTGAAGCTCTCAGGAAAACAGGGATTATGTATAGGCATTTGGTTTTCAAGGAGAATTTCACAGACACAGAGGCGGAAATGGATCATCAGAGGAACATTGCACTTAAGCACATTGAGCAGCACAAACTAAGTGGGATTGTTCACTTTGCTGGCCTTTCTAATGTCTATGATCTTGGCTTCTTCGACCAGCTCAGAGAAATTGAGGTTTTTGGGACATGGCCCATGGCACTACTTGCAGCAAACAGAGAGAAAGTGATCATTGAAGGGCCTGTGTGTGATTCTTCACAAGTCATAGGATGGCATTTGAAGAAAATGAACAACCAAACAGATCCAAGACCTCCCATTCACATTTCAAGTTTTGCATTCAATAGTTCAATTCTTTGGGACCCTGAGAGATGGGGTCGCACTTCATCGCTTCAAAGCTCCTCTCAGAATTCAATCAAATTTGTGAAAGAAGTGGTTCTTGAAGATGAGACAAAACTGAAGGGAATCCCACCAGAAGACTGTTCCAAGATCATGCTTTGGTCTCTTCGTTTTCATGCTGCTGGAGGAGCCACAACCACCAAACACCAAATCAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

362

Amino Acids

40.81

Weight (kDa)

9.33

Isoelectric Point (pI)

57.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AccII	CGCG	1 cut(s)	175
AciI	CCGC	3 cut(s)	173, 175, 575
AclWI	GGATC	3 cut(s)	14, 591, 824
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	4 cut(s)	398, 556, 934, 944
AcuI	CTGAAG	2 cut(s)	525, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	605
AgsI	TTSAA	9 cut(s)	550, 764, 808, 855, 868, 876, 920, 939, 968
AluBI	AGCT	5 cut(s)	50, 257, 509, 691, 924
AluI	AGCT	5 cut(s)	50, 257, 509, 691, 924
Alw26I	GTCTC	3 cut(s)	227, 968, 1032
AlwI	GGATC	3 cut(s)	14, 591, 824
AoxI	GGCC	5 cut(s)	176, 269, 652, 719, 767
ApeKI	GCWGC	6 cut(s)	203, 254, 257, 619, 737, 1043
ApoI	RAATTY	4 cut(s)	398, 556, 934, 944
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
Asp700I	GAANNNNTTC	1 cut(s)	960
AspS9I	GGNCC	5 cut(s)	31, 55, 720, 767, 886
AvaII	GGWCC	3 cut(s)	31, 55, 886
BbsI	GAAGAC	1 cut(s)	1008
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	215, 244, 266, 631, 749, 1030
BccI	CCATC	3 cut(s)	220, 792, 891
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	227, 968, 1032
BfaI	CTAG	2 cut(s)	129, 294
BfrI	CTTAAG	1 cut(s)	605
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	8 cut(s)	173, 176, 204, 255, 258, 620, 738, 1044
BlsI	GCNGC	8 cut(s)	174, 177, 205, 256, 259, 621, 739, 1045
Bme18I	GGWCC	3 cut(s)	31, 55, 886
BmgT120I	GGNCC	5 cut(s)	31, 55, 720, 767, 886
BmiI	GGNNCC	5 cut(s)	32, 447, 887, 888, 1054
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	1 cut(s)	1068
Bpu10I	CCTNAGC	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	1032
BsaJI	CCNNGG	2 cut(s)	173, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	255, 597
Bse8I	GATNNNNATC	1 cut(s)	301
BseDI	CCNNGG	2 cut(s)	173, 723
BseGI	GGATG	1 cut(s)	803
BseJI	GATNNNNATC	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	2 cut(s)	255, 597
BseMII	CTCAG	5 cut(s)	464, 526, 706, 882, 944
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	916, 1065
BseXI	GCAGC	6 cut(s)	215, 244, 266, 631, 749, 1030
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	5 cut(s)	178, 271, 654, 721, 769
BslFI	GGGAC	2 cut(s)	727, 899
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	3 cut(s)	227, 968, 1032
BsmFI	GGGAC	2 cut(s)	727, 899
BsmI	GAATGC	1 cut(s)	863
BsnI	GGCC	5 cut(s)	178, 271, 654, 721, 769
Bso31I	GGTCTC	1 cut(s)	1032
Bsp143I	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	3 cut(s)	173, 175, 575
BspANI	GGCC	5 cut(s)	178, 271, 654, 721, 769
BspCNI	CTCAG	5 cut(s)	463, 525, 705, 883, 943
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	5 cut(s)	32, 447, 887, 888, 1054
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	3 cut(s)	14, 591, 824
BspTI	CTTAAG	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	1032
BsrDI	GCAATG	2 cut(s)	255, 597
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	173, 723
BssMI	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
BssT1I	CCWWGG	1 cut(s)	723
Bst4CI	ACNGT	1 cut(s)	1007
Bst6I	CTCTTC	3 cut(s)	20, 324, 1035
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	6 cut(s)	450, 512, 629, 692, 891, 930
BstDSI	CCRYGG	2 cut(s)	173, 723
BstF5I	GGATG	1 cut(s)	803
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	8 cut(s)	9, 20, 144, 586, 673, 759, 832, 1017
BstMAI	GTCTC	3 cut(s)	227, 968, 1032
BstMBI	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
BstMWI	GCNNNNNNNGC	7 cut(s)	134, 254, 263, 277, 616, 734, 1052
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	6 cut(s)	215, 244, 266, 631, 749, 1030
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	829
BsuRI	GGCC	5 cut(s)	178, 271, 654, 721, 769
BtgI	CCRYGG	2 cut(s)	173, 723
BtgZI	GCGATG	1 cut(s)	897
BtsCI	GGATG	1 cut(s)	803
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	652
Cfr13I	GGNCC	5 cut(s)	31, 55, 720, 767, 886
Cfr42I	CCGCGG	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	5 cut(s)	79, 717, 724, 1018, 1040
DdeI	CTNAG	6 cut(s)	450, 512, 629, 692, 891, 930
DpnI	GATC	8 cut(s)	8, 19, 143, 585, 672, 758, 831, 1016
DpnII	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
DraI	TTTAAA	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	3 cut(s)	20, 324, 1035
EarI	CTCTTC	3 cut(s)	20, 324, 1035
EciI	GGCGGA	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	723
Eco147I	AGGCCT	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	1032
Eco47I	GGWCC	3 cut(s)	31, 55, 886
Eco57I	CTGAAG	2 cut(s)	525, 1004
EcoO109I	RGGNCCY	2 cut(s)	767, 886
EcoRI	GAATTC	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	5 cut(s)	82, 720, 727, 1021, 1043
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FaqI	GGGAC	2 cut(s)	727, 899
FatI	CATG	5 cut(s)	78, 716, 723, 1017, 1039
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	8 cut(s)	173, 176, 204, 255, 258, 620, 738, 1044
FokI	GGATG	1 cut(s)	810
Fsp4HI	GCNGC	8 cut(s)	173, 176, 204, 255, 258, 620, 738, 1044
FspBI	CTAG	2 cut(s)	129, 294
GluI	GCNGC	8 cut(s)	173, 176, 204, 255, 258, 620, 738, 1044
GsuI	CTGGAG	1 cut(s)	1068
HaeIII	GGCC	5 cut(s)	178, 271, 654, 721, 769
Hin1II	CATG	5 cut(s)	82, 720, 727, 1021, 1043
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	6 cut(s)	185, 297, 376, 488, 779, 990
Hpy166II	GTNNAC	3 cut(s)	34, 348, 643
Hpy188I	TCNGA	6 cut(s)	160, 307, 505, 591, 695, 933
Hpy188III	TCNNGA	3 cut(s)	294, 514, 965
Hpy8I	GTNNAC	3 cut(s)	34, 348, 643
HpyAV	CCTTC	3 cut(s)	351, 758, 979
HpyCH4III	ACNGT	1 cut(s)	1007
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	4 cut(s)	266, 602, 737, 863
HpyF10VI	GCNNNNNNNGC	7 cut(s)	134, 254, 263, 277, 616, 734, 1052
HpyF3I	CTNAG	6 cut(s)	450, 512, 629, 692, 891, 930
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	82, 720, 727, 1021, 1043
KflI	GGGWCCC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	756
KspI	CCGCGG	1 cut(s)	176
Kzo9I	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
LmnI	GCTCC	3 cut(s)	106, 929, 1052
Lsp1109I	GCAGC	6 cut(s)	215, 244, 266, 631, 749, 1030
MaeI	CTAG	2 cut(s)	129, 294
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	8 cut(s)	8, 19, 143, 585, 672, 758, 831, 1016
MboI	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	829
MluCI	AATT	7 cut(s)	240, 398, 556, 699, 876, 934, 944
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	128, 404
MnlI	CCTC	9 cut(s)	21, 201, 459, 565, 585, 697, 849, 937, 1043
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	3 cut(s)	213, 402, 606
MslI	CAYNNNNRTG	1 cut(s)	460
MspA1I	CMGCKG	2 cut(s)	175, 257
MspCI	CTTAAG	1 cut(s)	605
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	863
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	7 cut(s)	134, 254, 263, 277, 616, 734, 1052
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
NlaIII	CATG	5 cut(s)	82, 720, 727, 1021, 1043
NlaIV	GGNNCC	5 cut(s)	32, 447, 887, 888, 1054
NmuCI	GTSAC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	271
PctI	GAATGC	1 cut(s)	863
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	5 cut(s)	185, 297, 488, 779, 990
PkrI	GCNGC	8 cut(s)	174, 177, 205, 256, 259, 621, 739, 1045
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	886
Psp5II	RGGWCCY	1 cut(s)	886
PspN4I	GGNNCC	5 cut(s)	32, 447, 887, 888, 1054
PspPI	GGNCC	5 cut(s)	31, 55, 720, 767, 886
PspPPI	RGGWCCY	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	460
SacII	CCGCGG	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	213, 402, 606
SatI	GCNGC	8 cut(s)	173, 176, 204, 255, 258, 620, 738, 1044
Sau3AI	GATC	8 cut(s)	6, 17, 141, 583, 670, 756, 829, 1014
Sau96I	GGNCC	5 cut(s)	31, 55, 720, 767, 886
SchI	GAGTC	1 cut(s)	370
Sfr303I	CCGCGG	1 cut(s)	176
SgrBI	CCGCGG	1 cut(s)	176
SinI	GGWCC	3 cut(s)	31, 55, 886
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	7 cut(s)	240, 398, 556, 699, 876, 934, 944
SseBI	AGGCCT	1 cut(s)	271
SsiI	CCGC	3 cut(s)	173, 175, 575
SspMI	CTAG	2 cut(s)	129, 294
StuI	AGGCCT	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	1 cut(s)	1007
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	119, 684
TasI	AATT	7 cut(s)	240, 398, 556, 699, 876, 934, 944
TauI	GCSGC	2 cut(s)	175, 178
TfiI	GAWTC	5 cut(s)	185, 297, 488, 779, 990
Tru1I	TTAA	3 cut(s)	213, 402, 606
Tru9I	TTAA	3 cut(s)	213, 402, 606
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	6 cut(s)	203, 254, 257, 619, 737, 1043
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	5 cut(s)	289, 352, 830, 900, 1028
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	31, 55, 886
XapI	RAATTY	4 cut(s)	398, 556, 934, 944
XbaI	TCTAGA	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	2 cut(s)	129, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.