MD04G1103300.v1.1

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
19074439 .. 19077499
3061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1103300.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGGGTACAACGGAAAGAACAAAGAAGAGGGTCCAATTATGGAAGAAAGCTGCCGTCCATTTTGCTTTGTGTTTTGTTATGGGGTTCTTCTCAGGTTTTGCCCCAACGGATAAGGCTTCGCTTTTCGCTAGAACCGATGCCGTGGTTTCCTCCAATAAATCACTGGACTTTCCGCCGCAGTCAGTAGAACCGCCGCAAGAAATAGCACCGGATGTTATTAATAGAAGTTTGATAGCTGCAGAGACACCAAATGTGTCAATAGCAGCAGCAGCAGAACCTGCAAGGCATAAAGAGAGCTCCGAAAACTCGAGGTTCACACAAGAAGAAGAAGCAGAGGAAAAGAAAGAACCCGAGGTGACTCCGAGAAGGTTCATAATCATAGTCACTGCAACAGCAACGAGCACGAAAGACATTAAGTTTAAAAGTGTGTTTTTGAGAAGACTAGCCAATACTATAAGGTTGGTTCCTCAGCCGTTGCTTTGGATCGTGGTGGCGCCGAAAACGGAGTCGAATGAAGTGTCTGAAGTGCTGAGGGGAACGGGGATTATGTACAGGCATTTGGTTTCGAGAATGAATTTCACAGACGCAGAAGCTGAAAGGGATCGCCAGAGGAACATTGCTCTTAAGCACATTGAGAAGCACAGGATTAGTGGGATTGTCCACTTTGCAGGGCTTTCTAATGTTTACGATCTTGGCTTCTTCGACCGACTCAGAGAAATTGAGGTTTTTGGGACATGGCCAATGGCTATACTTGCAGCAAACAGAAAGAAGGTGATCATTGAAGGACCTGTATGTGATTCTTCACAAGTCATAGGATGGCATTTGAAGCAAATGAACAATGAAACAGAGACTAGGCCTCCCATTCATATCTCAAGTTTTGCTTTCAATAGTTCAATTCTTTGGGATCCCGAGAGATGGGGTCGCACTTCATCTCTTCAAAGCTCCTATCAGAATTCAATCAAATTTGTAAAGGAAGTGGTTCTTGAAGACGAAACAAAACTAAAGGGAATCCCACCAGAAGAATGCTCCAAGATCATGCTTTGGTGTCTTCGTCTTCATGCTGCAGGAGGAGCCACTGCACCACACCAAATCAATCAATGA

Protein Analysis

367

Amino Acids

41.26

Weight (kDa)

8.95

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 148 - 352 3.5e-58 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37090
fragaria_vesca FvH4_6g15450
malus_domestica MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica Prupe.6G239800_v2.0.a1
pyrus_communis pycom04g09840 pycom12g12210
rosa_chinensis RchiOBHm_Chr3g0468931
rosa_laevigata RLG00000024399
rosa_multiflora Rmu_sc0001639.1_g000009
rosa_roxburghii Rroxscaffold_6G00412450
rosa_rugosa Rorug03G0097600
rosa_samantha Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana Rw3G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 493
AciI CCGC 4 cut(s) 173, 176, 191, 194
AclWI GGATC 4 cut(s) 491, 609, 899, 912
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 3 cut(s) 574, 952, 962
AcuI CTGAAG 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 2 cut(s) 7, 551
AfiI CCNNNNNNNGG 1 cut(s) 915
AflII CTTAAG 1 cut(s) 623
AgsI TTSAA 7 cut(s) 782, 826, 886, 894, 938, 957, 986
AluBI AGCT 5 cut(s) 50, 236, 297, 593, 942
AluI AGCT 5 cut(s) 50, 236, 297, 593, 942
Alw21I GWGCWC 2 cut(s) 299, 404
Alw26I GTCTC 2 cut(s) 236, 842
AlwI GGATC 4 cut(s) 491, 609, 899, 912
AlwNI CAGNNNCTG 2 cut(s) 278, 593
Ama87I CYCGRG 3 cut(s) 307, 350, 908
AoxI GGCC 2 cut(s) 737, 854
ApeKI GCWGC 7 cut(s) 50, 236, 263, 266, 269, 755, 1061
ApoI RAATTY 3 cut(s) 574, 952, 962
ArsI GACNNNNNNTTYG 4 cut(s) 491, 503, 523, 535
AseI ATTAAT 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 978
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 31, 785
AsuHPI GGTGA 2 cut(s) 367, 784
AvaI CYCGRG 3 cut(s) 307, 350, 908
AvaII GGWCC 2 cut(s) 31, 785
BalI TGGCCA 1 cut(s) 739
BamHI GGATCC 1 cut(s) 904
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 4 cut(s) 445, 993, 1040, 1046
Bbv12I GWGCWC 2 cut(s) 299, 404
BbvCI CCTCAGC 2 cut(s) 468, 530
BbvI GCAGC 7 cut(s) 37, 223, 275, 278, 281, 767, 1048
BccI CCATC 2 cut(s) 810, 909
BceAI ACGGC 3 cut(s) 38, 125, 457
BclI TGATCA 1 cut(s) 774
BcoDI GTCTC 2 cut(s) 236, 842
BfaI CTAG 3 cut(s) 129, 443, 852
BfmI CTRYAG 2 cut(s) 237, 1062
BfoI RGCGCY 1 cut(s) 497
BfrI CTTAAG 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 9 cut(s) 51, 176, 194, 237, 264, 267, 270, 756, 1062
BlsI GCNGC 9 cut(s) 52, 177, 195, 238, 265, 268, 271, 757, 1063
Bme18I GGWCC 2 cut(s) 31, 785
BmeT110I CYCGRG 3 cut(s) 307, 350, 908
BmgT120I GGNCC 2 cut(s) 31, 785
BmiI GGNNCC 5 cut(s) 32, 465, 495, 906, 1072
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 4 cut(s) 445, 993, 1040, 1046
Bpu10I CCTNAGC 2 cut(s) 468, 530
BpuEI CTTGAG 1 cut(s) 856
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 141, 351
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 841, 871
Bsc4I CCNNNNNNNGG 1 cut(s) 915
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 141, 351
BseGI GGATG 2 cut(s) 217, 821
BseLI CCNNNNNNNGG 1 cut(s) 915
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 4 cut(s) 105, 482, 521, 724
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 1083
BseXI GCAGC 7 cut(s) 37, 223, 275, 278, 281, 767, 1048
BsgI GTGCAG 1 cut(s) 1062
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 2 cut(s) 739, 856
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 2 cut(s) 299, 404
BsiHKCI CYCGRG 3 cut(s) 307, 350, 908
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 1 cut(s) 915
BsmAI GTCTC 2 cut(s) 236, 842
BsmFI GGGAC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 1028
BsnI GGCC 2 cut(s) 739, 856
BsoBI CYCGRG 3 cut(s) 307, 350, 908
Bsp1286I GDGCHC 2 cut(s) 299, 404
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
BspACI CCGC 4 cut(s) 173, 176, 191, 194
BspANI GGCC 2 cut(s) 739, 856
BspCNI CTCAG 4 cut(s) 104, 481, 522, 723
BspLI GGNNCC 5 cut(s) 32, 465, 495, 906, 1072
BspMAI CTGCAG 2 cut(s) 241, 1066
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 4 cut(s) 491, 609, 899, 912
BspT107I GGYRCC 1 cut(s) 493
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 141, 351
BssMI GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
BssNI GRCGYC 1 cut(s) 494
Bst6I CTCTTC 2 cut(s) 20, 939
BstACI GRCGYC 1 cut(s) 494
BstAFI CTTAAG 1 cut(s) 623
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 549
BstDEI CTNAG 4 cut(s) 91, 468, 530, 710
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 217, 821
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 6 cut(s) 486, 604, 691, 777, 907, 1035
BstMAI GTCTC 2 cut(s) 236, 842
BstMBI GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 5 cut(s) 269, 278, 752, 826, 1070
BstSFI CTRYAG 2 cut(s) 237, 1062
BstV1I GCAGC 7 cut(s) 37, 223, 275, 278, 281, 767, 1048
BstV2I GAAGAC 4 cut(s) 445, 993, 1040, 1046
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 2 cut(s) 739, 856
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 217, 821
BtsI GCAGTG 2 cut(s) 384, 1074
BtsIMutI CAGTG 3 cut(s) 161, 384, 1074
BveI ACCTGC 1 cut(s) 286
CaiI CAGNNNCTG 2 cut(s) 278, 593
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 31, 785
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 6, 550
CviAII CATG 3 cut(s) 735, 1036, 1058
CviQI GTAC 2 cut(s) 6, 550
DdeI CTNAG 4 cut(s) 91, 468, 530, 710
DinI GGCGCC 1 cut(s) 495
DpnI GATC 6 cut(s) 485, 603, 690, 776, 906, 1034
DpnII GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 737
Eam1104I CTCTTC 2 cut(s) 20, 939
EarI CTCTTC 2 cut(s) 20, 939
EciI GGCGGA 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 31, 785
Eco53kI GAGCTC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 543
Eco88I CYCGRG 3 cut(s) 307, 350, 908
EcoICRI GAGCTC 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 299
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 3 cut(s) 738, 1039, 1061
FalI AAGNNNNNCTT 4 cut(s) 865, 897, 966, 998
FaqI GGGAC 1 cut(s) 745
FatI CATG 3 cut(s) 734, 1035, 1057
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 9 cut(s) 51, 176, 194, 237, 264, 267, 270, 756, 1062
FokI GGATG 2 cut(s) 224, 828
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 9 cut(s) 51, 176, 194, 237, 264, 267, 270, 756, 1062
FspBI CTAG 3 cut(s) 129, 443, 852
GlaI GCGC 1 cut(s) 495
GluI GCNGC 9 cut(s) 51, 176, 194, 237, 264, 267, 270, 756, 1062
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 2 cut(s) 739, 856
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 3 cut(s) 738, 1039, 1061
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 5 cut(s) 358, 506, 708, 797, 1008
HpaII CCGG 1 cut(s) 209
HphI GGTGA 2 cut(s) 367, 784
Hpy166II GTNNAC 3 cut(s) 315, 661, 685
Hpy188I TCNGA 5 cut(s) 301, 363, 523, 713, 951
Hpy188III TCNNGA 3 cut(s) 567, 908, 983
Hpy8I GTNNAC 3 cut(s) 315, 661, 685
HpyAV CCTTC 3 cut(s) 360, 763, 776
HpyCH4V TGCA 7 cut(s) 239, 281, 389, 668, 755, 1064, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 278, 752, 826, 1070
HpyF3I CTNAG 4 cut(s) 91, 468, 530, 710
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 3 cut(s) 738, 1039, 1061
HspAI GCGC 1 cut(s) 494
KasI GGCGCC 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
LmnI GCTCC 4 cut(s) 302, 947, 1031, 1070
Lsp1109I GCAGC 7 cut(s) 37, 223, 275, 278, 281, 767, 1048
LweI GCATC 1 cut(s) 127
MaeI CTAG 3 cut(s) 129, 443, 852
MaeIII GTNAC 2 cut(s) 355, 382
MalI GATC 6 cut(s) 485, 603, 690, 776, 906, 1034
MboI GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 2 cut(s) 299, 404
MlsI TGGCCA 1 cut(s) 739
MluCI AATT 6 cut(s) 35, 574, 717, 894, 952, 962
MluNI TGGCCA 1 cut(s) 739
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 3 cut(s) 352, 515, 702
Mox20I TGGCCA 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 978
MscI TGGCCA 1 cut(s) 739
MseI TTAA 4 cut(s) 219, 414, 420, 624
Msp20I TGGCCA 1 cut(s) 739
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 1028
MwoI GCNNNNNNNGC 5 cut(s) 269, 278, 752, 826, 1070
NarI GGCGCC 1 cut(s) 494
NdeII GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
NlaIII CATG 3 cut(s) 738, 1039, 1061
NlaIV GGNNCC 5 cut(s) 32, 465, 495, 906, 1072
NmuCI GTSAC 2 cut(s) 355, 382
PaeR7I CTCGAG 1 cut(s) 307
PceI AGGCCT 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 1028
PdmI GAANNNNTTC 1 cut(s) 978
PfeI GAWTC 2 cut(s) 797, 1008
PkrI GCNGC 9 cut(s) 52, 177, 195, 238, 265, 268, 271, 757, 1063
PleI GAGTC 3 cut(s) 352, 514, 702
PluTI GGCGCC 1 cut(s) 497
PpsI GAGTC 3 cut(s) 352, 514, 702
PpuMI RGGWCCY 1 cut(s) 785
PshBI ATTAAT 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 785
PspN4I GGNNCC 5 cut(s) 32, 465, 495, 906, 1072
PspPI GGNCC 2 cut(s) 31, 785
PspPPI RGGWCCY 1 cut(s) 785
PspXI VCTCGAGB 1 cut(s) 307
PstI CTGCAG 2 cut(s) 241, 1066
PstNI CAGNNNCTG 2 cut(s) 278, 593
PsuI RGATCY 1 cut(s) 904
RsaI GTAC 2 cut(s) 7, 551
RsaNI GTAC 2 cut(s) 6, 550
SacI GAGCTC 1 cut(s) 299
SaqAI TTAA 4 cut(s) 219, 414, 420, 624
SatI GCNGC 9 cut(s) 51, 176, 194, 237, 264, 267, 270, 756, 1062
Sau3AI GATC 6 cut(s) 483, 601, 688, 774, 904, 1032
Sau96I GGNCC 2 cut(s) 31, 785
SchI GAGTC 3 cut(s) 352, 515, 702
SduI GDGCHC 2 cut(s) 299, 404
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 2 cut(s) 237, 1062
SfoI GGCGCC 1 cut(s) 495
Sfr274I CTCGAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 31, 785
SlaI CTCGAG 1 cut(s) 307
SmlI CTYRAG 3 cut(s) 307, 623, 871
SmoI CTYRAG 3 cut(s) 307, 623, 871
Sse9I AATT 6 cut(s) 35, 574, 717, 894, 952, 962
SseBI AGGCCT 1 cut(s) 856
SsiI CCGC 4 cut(s) 173, 176, 191, 194
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 3 cut(s) 129, 443, 852
SstI GAGCTC 1 cut(s) 299
StuI AGGCCT 1 cut(s) 856
TaqI TCGA 4 cut(s) 308, 509, 566, 702
TaqII GACCGA 1 cut(s) 720
TasI AATT 6 cut(s) 35, 574, 717, 894, 952, 962
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 178, 196
TfiI GAWTC 2 cut(s) 797, 1008
Tru1I TTAA 4 cut(s) 219, 414, 420, 624
Tru9I TTAA 4 cut(s) 219, 414, 420, 624
TscAI CASTG 3 cut(s) 168, 391, 1081
TseFI GTSAC 2 cut(s) 355, 382
TseI GCWGC 7 cut(s) 50, 236, 263, 266, 269, 755, 1061
Tsp45I GTSAC 2 cut(s) 355, 382
TspDTI ATGAA 8 cut(s) 361, 528, 587, 848, 854, 855, 918, 1046
TspGWI ACGGA 3 cut(s) 26, 122, 518
TspRI CASTG 3 cut(s) 168, 391, 1081
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 31, 785
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 3 cut(s) 574, 952, 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 978
XspI CTAG 3 cut(s) 129, 443, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.