Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001639.1

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Forward (+)

37245 .. 39920

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001639.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgggtacaacagagagatcaagaaagaaggttcaactatggaagaaagctgctgtccattttgctttgtgttttgttatgggattcttcacaggctttgctccaacgtttaaaccttccatcttgtctaaacctgctgtgagttcatcaaagaaaatagagttttcgcctcaaccagtagaaccgccgcaacaagtcacaaatttcaatagaagtttgatagctgaaaatttgacaatggcagcatcctcccctccaaattctgaagaaacctactccgaatccgaaaggaggatgtcagaagatgaagaagaagaagtgaaagaacccaatttgacaccaagaaggtttattatcatagtcacaccaacaagcaccaaaaacccactaaaatgtgtgtttctgagaagattggcaaacaccataaagttggttcctcagccattgttgtggattgtggtggaagggaagaccgagtcgaatgaggtttctgaagtgcttaggaaaacaggtgttctgtataggcatttggttttcaaagagaacttcacagatactgaggctgaaatggatcatcagaggaatgttgctcttaagcacattgagcagcacaagcttagtgggattgttcactttgctgggctttccaatgtttatgatcttggcttctttgatcagctcagagaaattgaggtgtttgggacatggccaatggcgctactagcagcaaacaagaaaaaagtgatcattgaaggacctgtatgtgattcttcacaagtgataggatggcatatcctaaggaaaatgaacaatactgatcaaacagatgatactaatagacttcgcattcatatttcaagctttgcattcaatagctcaattctttgggaccctgaaagatggggtcgcacttcatcacttcaaagcacctctcagaattcaatgaaatttgtaaagcaagtggttcttgaagatgagacaaaactaaagggaatccctccagaagactgctcaaagatcatgctttggtctcttcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

346

Amino Acids

39.48

Weight (kDa)

8.55

Isoelectric Point (pI)

63.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	2 cut(s)	185, 188
AclI	AACGTT	1 cut(s)	107
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	707
AcsI	RAATTY	5 cut(s)	202, 229, 259, 937, 947
AcuI	CTGAAG	2 cut(s)	285, 513
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	9 cut(s)	35, 208, 538, 752, 858, 871, 923, 942, 971
AluBI	AGCT	6 cut(s)	50, 224, 616, 679, 861, 876
AluI	AGCT	6 cut(s)	50, 224, 616, 679, 861, 876
Alw26I	GTCTC	2 cut(s)	971, 1035
AlwI	GGATC	1 cut(s)	579
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	4 cut(s)	50, 242, 607, 725
ApoI	RAATTY	5 cut(s)	202, 229, 259, 937, 947
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	2 cut(s)	755, 889
AvaII	GGWCC	2 cut(s)	755, 889
AxyI	CCTNAGG	1 cut(s)	797
BalI	TGGCCA	1 cut(s)	709
BbsI	GAAGAC	2 cut(s)	476, 1011
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	37, 254, 619, 737
BccI	CCATC	3 cut(s)	128, 780, 894
BclI	TGATCA	3 cut(s)	673, 744, 817
BcoDI	GTCTC	2 cut(s)	971, 1035
BfaI	CTAG	1 cut(s)	722
BfoI	RGCGCY	1 cut(s)	719
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	5 cut(s)	51, 188, 243, 608, 726
BlsI	GCNGC	5 cut(s)	52, 189, 244, 609, 727
Bme18I	GGWCC	2 cut(s)	755, 889
BmgT120I	GGNCC	2 cut(s)	755, 889
BmiI	GGNNCC	3 cut(s)	435, 890, 891
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	476, 1011
BpmI	CTGGAG	1 cut(s)	984
Bpu10I	CCTNAGC	2 cut(s)	438, 500
BsaI	GGTCTC	1 cut(s)	1035
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	797
BseGI	GGATG	3 cut(s)	245, 300, 791
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	5 cut(s)	395, 452, 549, 694, 947
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	4 cut(s)	37, 254, 619, 737
BseYI	CCCAGC	1 cut(s)	638
BshFI	GGCC	1 cut(s)	709
BslFI	GGGAC	2 cut(s)	715, 902
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	971, 1035
BsmFI	GGGAC	2 cut(s)	715, 902
BsmI	GAATGC	2 cut(s)	846, 866
BsnI	GGCC	1 cut(s)	709
Bso31I	GGTCTC	1 cut(s)	1035
Bsp143I	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
BspACI	CCGC	2 cut(s)	185, 188
BspANI	GGCC	1 cut(s)	709
BspCNI	CTCAG	5 cut(s)	396, 451, 550, 693, 946
BspLI	GGNNCC	3 cut(s)	435, 890, 891
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	579
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
Bst6I	CTCTTC	1 cut(s)	1038
BstAFI	CTTAAG	1 cut(s)	593
BstDEI	CTNAG	8 cut(s)	404, 438, 500, 558, 617, 680, 797, 933
BstF5I	GGATG	3 cut(s)	245, 300, 791
BstH2I	RGCGCY	1 cut(s)	719
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	7 cut(s)	20, 574, 661, 676, 747, 820, 1020
BstMAI	GTCTC	2 cut(s)	971, 1035
BstMBI	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
BstMWI	GCNNNNNNNGC	4 cut(s)	604, 613, 715, 722
BstV1I	GCAGC	4 cut(s)	37, 254, 619, 737
BstV2I	GAAGAC	2 cut(s)	476, 1011
BstXI	CCANNNNNNTGG	2 cut(s)	430, 450
Bsu36I	CCTNAGG	1 cut(s)	797
BsuRI	GGCC	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	245, 300, 791
BveI	ACCTGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	755, 889
Csp6I	GTAC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	2 cut(s)	705, 1021
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	8 cut(s)	404, 438, 500, 558, 617, 680, 797, 933
DpnI	GATC	7 cut(s)	19, 573, 660, 675, 746, 819, 1019
DpnII	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
DraI	TTTAAA	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	707
Eam1104I	CTCTTC	1 cut(s)	1038
EarI	CTCTTC	1 cut(s)	1038
Eco31I	GGTCTC	1 cut(s)	1035
Eco47I	GGWCC	2 cut(s)	755, 889
Eco57I	CTGAAG	2 cut(s)	285, 513
Eco81I	CCTNAGG	1 cut(s)	797
EcoO109I	RGGNCCY	2 cut(s)	755, 889
EcoRI	GAATTC	1 cut(s)	937
FaeI	CATG	2 cut(s)	708, 1024
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FaqI	GGGAC	2 cut(s)	715, 902
FatI	CATG	2 cut(s)	704, 1020
FbaI	TGATCA	3 cut(s)	673, 744, 817
Fnu4HI	GCNGC	5 cut(s)	51, 188, 243, 608, 726
FokI	GGATG	3 cut(s)	232, 307, 798
Fsp4HI	GCNGC	5 cut(s)	51, 188, 243, 608, 726
FspBI	CTAG	1 cut(s)	722
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	5 cut(s)	51, 188, 243, 608, 726
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	984
HaeII	RGCGCY	1 cut(s)	719
HaeIII	GGCC	1 cut(s)	709
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	2 cut(s)	708, 1024
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HindIII	AAGCTT	2 cut(s)	614, 859
HinfI	GANTC	5 cut(s)	84, 281, 476, 767, 993
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	9 cut(s)	265, 280, 286, 301, 405, 493, 579, 683, 936
Hpy188III	TCNNGA	3 cut(s)	21, 968, 1001
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	5 cut(s)	22, 126, 339, 458, 746
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	604, 613, 715, 722
HpyF3I	CTNAG	8 cut(s)	404, 438, 500, 558, 617, 680, 797, 933
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	708, 1024
HspAI	GCGC	1 cut(s)	716
KflI	GGGWCCC	1 cut(s)	889
Ksp22I	TGATCA	3 cut(s)	673, 744, 817
Kzo9I	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	8 cut(s)	78, 147, 189, 495, 624, 771, 906, 1014
Lsp1109I	GCAGC	4 cut(s)	37, 254, 619, 737
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	722
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	196, 361
MalI	GATC	7 cut(s)	19, 573, 660, 675, 746, 819, 1019
MboI	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
MlsI	TGGCCA	1 cut(s)	709
MluCI	AATT	8 cut(s)	202, 229, 259, 331, 687, 879, 937, 947
MluNI	TGGCCA	1 cut(s)	709
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	709
MseI	TTAA	3 cut(s)	111, 594, 1039
MslI	CAYNNNNRTG	2 cut(s)	391, 448
Msp20I	TGGCCA	1 cut(s)	709
MspCI	CTTAAG	1 cut(s)	593
MssI	GTTTAAAC	1 cut(s)	112
Mva1269I	GAATGC	2 cut(s)	846, 866
MwoI	GCNNNNNNNGC	4 cut(s)	604, 613, 715, 722
NdeII	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
NlaIII	CATG	2 cut(s)	708, 1024
NlaIV	GGNNCC	3 cut(s)	435, 890, 891
NmuCI	GTSAC	2 cut(s)	196, 361
PctI	GAATGC	2 cut(s)	846, 866
PfeI	GAWTC	4 cut(s)	84, 281, 767, 993
PflFI	GACNNNGTC	1 cut(s)	475
PkrI	GCNGC	5 cut(s)	52, 189, 244, 609, 727
PleI	GAGTC	1 cut(s)	484
PmeI	GTTTAAAC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	2 cut(s)	755, 889
Psp1406I	AACGTT	1 cut(s)	107
Psp5II	RGGWCCY	2 cut(s)	755, 889
PspFI	CCCAGC	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	435, 890, 891
PspPI	GGNCC	2 cut(s)	755, 889
PspPPI	RGGWCCY	2 cut(s)	755, 889
PstNI	CAGNNNCTG	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	475
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	391, 448
SaqAI	TTAA	3 cut(s)	111, 594, 1039
SatI	GCNGC	5 cut(s)	51, 188, 243, 608, 726
Sau3AI	GATC	7 cut(s)	17, 571, 658, 673, 744, 817, 1017
Sau96I	GGNCC	2 cut(s)	755, 889
SchI	GAGTC	1 cut(s)	485
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	2 cut(s)	755, 889
SmiMI	CAYNNNNRTG	2 cut(s)	391, 448
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	8 cut(s)	202, 229, 259, 331, 687, 879, 937, 947
SsiI	CCGC	2 cut(s)	185, 188
SspMI	CTAG	1 cut(s)	722
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	479
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	8 cut(s)	202, 229, 259, 331, 687, 879, 937, 947
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	84, 281, 767, 993
Tru1I	TTAA	3 cut(s)	111, 594, 1039
Tru9I	TTAA	3 cut(s)	111, 594, 1039
TseFI	GTSAC	2 cut(s)	196, 361
TseI	GCWGC	4 cut(s)	50, 242, 607, 725
Tsp45I	GTSAC	2 cut(s)	196, 361
TspDTI	ATGAA	7 cut(s)	135, 321, 821, 839, 903, 959, 1025
Tth111I	GACNNNGTC	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	755, 889
XapI	RAATTY	5 cut(s)	202, 229, 259, 937, 947
XspI	CTAG	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.