Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014975

Physical Location & Seq

Genomic Coordinates Forward (+)

18733805 .. 18737887

Gene Structure 4083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG205200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGTACAACAGAGAGATCAAGAAAGAAGGTTCAACTATGGAAGAAAGCTGCTGTCCATTTTGCTTTGTGTTTTGTTATGGGATTCTTCACAGGCTTTGCTCCAACGTTTAAACCTTCCATCTTGTCTAAACCTGCTGTGAGTTCATCAAAGAAAATAGAGTTTTCGCCTCAACCAGTAGAACCGCCGCAACAAGTCACAAATTTCAATAGAACTTTGATAGCAGAAAATTTGGCAATGGCAGCATCCTCCCCTCCAAATTCTGAAGAAACCTATTCCGAATCCGAAAGGAGGATGTCAGAAGATGAAGAAGAAGAAGTGAAAGAACCCAATTTGACACCAAGAAGGTTTATTATCATAGTCACACCAACAAGCACCAAAAACCCATTAAAATGTGTGTTTCTGAGAAGATTGGCAAACACCATAAAGTTGGTTCCTCAGCCATTGTTGTGGATTGTGGTGGAAGGGAAGACCGAGTCGAATGAGGTTTCTGAAGTGCTTAGGAAAACAGGTGTTATGTATAGGCATTTGGTTTTCAAAGAGAACTTCACAGATACTGAGGCTGAAATGGATCATCAGAGGAATGTTGCTCTTAAGCACATTGAGCAGCACAAGCTTAGTGGGATTGTTCACTTTGCTGGGCTTTCCAATGTTTATGATCTTGGCTTCTTTGATCAGCTCAGAGAAATTGAGTATGTAATCCAACTCTCTTCCCTTTTCTGTTTATCTATATCTCAAACATTACTTAATTTTTTGGCATTTTGGAAAAGAGTTTCAAACATTTTTATCTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

265

Amino Acids

30.4

Weight (kDa)

8.69

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	138 - 233	4.2e-30	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37090
fragaria_vesca	FvH4_6g15450
malus_domestica	MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica	Prupe.6G239800_v2.0.a1
pyrus_communis	pycom04g09840 pycom12g12210
rosa_chinensis	RchiOBHm_Chr3g0468931
rosa_laevigata	RLG00000024399
rosa_multiflora	Rmu_sc0001639.1_g000009
rosa_roxburghii	Rroxscaffold_6G00412450
rosa_rugosa	Rorug03G0097600
rosa_samantha	Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana	Rw3G013860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	2 cut(s)	185, 188
AclI	AACGTT	1 cut(s)	107
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	3 cut(s)	202, 229, 259
AcuI	CTGAAG	2 cut(s)	285, 513
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	35, 208, 538, 777
AluBI	AGCT	3 cut(s)	50, 616, 679
AluI	AGCT	3 cut(s)	50, 616, 679
AlwI	GGATC	1 cut(s)	579
AlwNI	CAGNNNCTG	1 cut(s)	557
ApeKI	GCWGC	3 cut(s)	50, 242, 607
ApoI	RAATTY	3 cut(s)	202, 229, 259
BbsI	GAAGAC	1 cut(s)	476
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	37, 254, 619
BccI	CCATC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	673
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	4 cut(s)	51, 188, 243, 608
BlsI	GCNGC	4 cut(s)	52, 189, 244, 609
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	476
Bpu10I	CCTNAGC	2 cut(s)	438, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	245, 300
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	4 cut(s)	395, 452, 549, 694
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	37, 254, 619
BseYI	CCCAGC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	17, 571, 658, 673
BspACI	CCGC	2 cut(s)	185, 188
BspCNI	CTCAG	4 cut(s)	396, 451, 550, 693
BspLI	GGNNCC	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	579
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	176
BssMI	GATC	4 cut(s)	17, 571, 658, 673
Bst6I	CTCTTC	1 cut(s)	715
BstAFI	CTTAAG	1 cut(s)	593
BstDEI	CTNAG	6 cut(s)	404, 438, 500, 558, 617, 680
BstF5I	GGATG	2 cut(s)	245, 300
BstKTI	GATC	4 cut(s)	20, 574, 661, 676
BstMBI	GATC	4 cut(s)	17, 571, 658, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 604, 613
BstV1I	GCAGC	3 cut(s)	37, 254, 619
BstV2I	GAAGAC	1 cut(s)	476
BstXI	CCANNNNNNTGG	2 cut(s)	430, 450
BtsCI	GGATG	2 cut(s)	245, 300
BveI	ACCTGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviAII	CATG	1 cut(s)	795
CviJI	RGCY	8 cut(s)	50, 96, 442, 563, 616, 643, 666, 679
CviKI_1	RGCY	8 cut(s)	50, 96, 442, 563, 616, 643, 666, 679
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	6 cut(s)	404, 438, 500, 558, 617, 680
DpnI	GATC	4 cut(s)	19, 573, 660, 675
DpnII	GATC	4 cut(s)	17, 571, 658, 673
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	715
EarI	CTCTTC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	285, 513
FaeI	CATG	1 cut(s)	798
FatI	CATG	1 cut(s)	794
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	51, 188, 243, 608
FokI	GGATG	2 cut(s)	232, 307
Fsp4HI	GCNGC	4 cut(s)	51, 188, 243, 608
GluI	GCNGC	4 cut(s)	51, 188, 243, 608
GsaI	CCCAGC	1 cut(s)	642
Hin1II	CATG	1 cut(s)	798
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	3 cut(s)	84, 281, 476
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	8 cut(s)	265, 280, 286, 301, 405, 493, 579, 683
Hpy188III	TCNNGA	2 cut(s)	21, 790
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	4 cut(s)	22, 126, 339, 458
HpyCH4IV	ACGT	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 604, 613
HpyF3I	CTNAG	6 cut(s)	404, 438, 500, 558, 617, 680
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	798
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	17, 571, 658, 673
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	78, 147, 189, 495, 624, 775
Lsp1109I	GCAGC	3 cut(s)	37, 254, 619
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	196, 361
MalI	GATC	4 cut(s)	19, 573, 660, 675
MboI	GATC	4 cut(s)	17, 571, 658, 673
MluCI	AATT	6 cut(s)	202, 229, 259, 331, 687, 748
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	128, 727
MnlI	CCTC	8 cut(s)	180, 259, 264, 285, 447, 478, 553, 573
MseI	TTAA	4 cut(s)	111, 389, 594, 747
MslI	CAYNNNNRTG	2 cut(s)	391, 448
MspCI	CTTAAG	1 cut(s)	593
MssI	GTTTAAAC	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	242, 604, 613
NdeII	GATC	4 cut(s)	17, 571, 658, 673
NlaIII	CATG	1 cut(s)	798
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	2 cut(s)	196, 361
PfeI	GAWTC	2 cut(s)	84, 281
PflFI	GACNNNGTC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	52, 189, 244, 609
PleI	GAGTC	1 cut(s)	484
PmeI	GTTTAAAC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	484
Psp1406I	AACGTT	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	638
PspN4I	GGNNCC	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	475
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	391, 448
SaqAI	TTAA	4 cut(s)	111, 389, 594, 747
SatI	GCNGC	4 cut(s)	51, 188, 243, 608
Sau3AI	GATC	4 cut(s)	17, 571, 658, 673
SchI	GAGTC	1 cut(s)	485
SfaNI	GCATC	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	391, 448
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	6 cut(s)	202, 229, 259, 331, 687, 748
SsiI	CCGC	2 cut(s)	185, 188
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	479
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	6 cut(s)	202, 229, 259, 331, 687, 748
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	84, 281
Tru1I	TTAA	4 cut(s)	111, 389, 594, 747
Tru9I	TTAA	4 cut(s)	111, 389, 594, 747
TseFI	GTSAC	2 cut(s)	196, 361
TseI	GCWGC	3 cut(s)	50, 242, 607
Tsp45I	GTSAC	2 cut(s)	196, 361
TspDTI	ATGAA	2 cut(s)	135, 321
Tth111I	GACNNNGTC	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	3 cut(s)	202, 229, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.