pycom04g09840

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
12589346 .. 12592233
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09840.3

Sequence Viewer

Length: 1461 bp
ATGTTAAAAAAATTGACGGGTTTCTATCCCAACAACTATTTGGTGCAGAGACAGCAACTCAAGTCCTTCCCATTTCTCTTCAACTTCCTTTTACTTGAAGCAACAACTAACAAAAAGAAAAATTACTCACCAGAAGAAGCACCTCATAACAAAAACAAATGTTCTTTGAGTTTGCCAGTATCAATCATAACCAAGTTAGCTAGCTCCACCTTTTTTTTTAATAAATTAACAACTTTAAGCATAAACCAATCTGATATAAAATTTCTCATACAAATTCCTACATTATATATATTATACTGGCCAAAACCCACCAAAAAACCCAGTAACCCTAATTCCAAATTTAATAGATTTTTCAAAGAAATGGGTACAACGGAAAGAACAAAGAAGAGGGTCCAATTATGGAAGAAAGCTGCCGTCCATTTTGCTTTGTGTTTTGTTATGGGGTTCTTCTCAGGCTTTGCTCCAACGGATAAGGCTTCGCTTTTCGCTAGAACCGATGCCGTGGTTTCCTCCAATAAATCACTGGATTTTCCGCCGCAGTCGGTAGAACCGCCGCAAGAAATAGTACCGGATGTTATTAATAGAAGTTTGATAGCTGCAGAGACACCAAATGTGTCAATAGCAGCAGCAGCAGAACCTGCAAGGCACAAAGAGAGCTCCGAAAACTCGAGGTTCACACAAGAAGAAGAAGCAGAGGAAAAGAAAGAACCCGAGGTGACGCCGAGAAGGTTCATAATCATAGTCACTGCGACGGCAACGAGCACGAAAGACATTAAGTTTAAAAGTGTGTTTTTGAGAAGACTAGCCAATACTATAAGGTTGGTTCCTCAGCCGCTGCTTTGGATCGTGGTGGCGCCGAAAACGGAGTCGAATGAAGTGTCCGAAGTGCTGAGGGGAACGGGGATTATGTACAGGCATTTGGTTTCGAGAATGAATTTCACAGACGCAGAAGCTGAAAGGGATCGCCAGAGGAACATTGCTCTTAAGCACATTGAAAAGCACAGGATTAGTGGGATTGTTCACTTTGCTGGGCTTTCTAATGTTTACGATCTTGGCTTCTTCGACCAACTCAGAGAAATTGAGGTTTTTGGGACATGGCCAATTGCTCTACTTGCAGCAAACAGAAAGAAGGTGATCATTGAAGGACCTGTATGTGATTCTTCACAAGTCATAGGATGGCATTTGAAGCAAATGAACAATGAAACAGAGACTAGGCTTCCCATTCATATCTCAAGTTTTGCTTTCAATAGTTCAATTCTTTGGGACCCCGAGAGATGGGGTCGCACTTCATCTCTTCAAAGCTCCTATCAGAATTCAATCAAATTTGTAAAGGAAGTGGTTCTTGAAGACGAAACAAAACTAAAGGGAATCCCACCAGGAGAATGCTCCAAGATCATGCTTTGGTGTCTTCGTCTTCATGCTGCAGGAGGAGCCACTGCACCACACCAAATCAATCAATGA

Protein Analysis

487

Amino Acids

55.24

Weight (kDa)

9.58

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37090
fragaria_vesca FvH4_6g15450
malus_domestica MD04G1103300.v1.1 MD12G1123400.v1.1
prunus_persica Prupe.6G239800_v2.0.a1
pyrus_communis pycom04g09840 pycom12g12210
rosa_chinensis RchiOBHm_Chr3g0468931
rosa_laevigata RLG00000024399
rosa_multiflora Rmu_sc0001639.1_g000009
rosa_roxburghii Rroxscaffold_6G00412450
rosa_rugosa Rorug03G0097600
rosa_samantha Rh3AG147300 Rh3BG169900 Rh3DG205200
rosa_wichuraiana Rw3G013860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 853
AciI CCGC 5 cut(s) 533, 536, 551, 554, 833
AclWI GGATC 2 cut(s) 851, 969
AcoI YGGCCR 2 cut(s) 299, 1097
AcsI RAATTY 6 cut(s) 260, 273, 338, 934, 1312, 1322
AcyI GRCGYC 2 cut(s) 719, 854
AfaI GTAC 3 cut(s) 367, 567, 911
AfiI CCNNNNNNNGG 1 cut(s) 1275
AflII CTTAAG 1 cut(s) 983
AjnI CCWGG 1 cut(s) 1375
AluBI AGCT 7 cut(s) 200, 204, 410, 596, 657, 953, 1302
AluI AGCT 7 cut(s) 200, 204, 410, 596, 657, 953, 1302
Alw21I GWGCWC 2 cut(s) 659, 764
Alw26I GTCTC 3 cut(s) 43, 596, 1202
AlwI GGATC 2 cut(s) 851, 969
AlwNI CAGNNNCTG 3 cut(s) 638, 835, 953
Ama87I CYCGRG 3 cut(s) 667, 710, 1268
AoxI GGCC 2 cut(s) 299, 1097
ApeKI GCWGC 8 cut(s) 410, 596, 623, 626, 629, 835, 1115, 1421
ApoI RAATTY 6 cut(s) 260, 273, 338, 934, 1312, 1322
ArsI GACNNNNNNTTYG 4 cut(s) 851, 863, 883, 895
AseI ATTAAT 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 1338
AspLEI GCGC 1 cut(s) 856
AspS9I GGNCC 3 cut(s) 391, 1145, 1264
AsuHPI GGTGA 3 cut(s) 120, 727, 1144
AsuNHI GCTAGC 1 cut(s) 200
AvaI CYCGRG 3 cut(s) 667, 710, 1268
AvaII GGWCC 3 cut(s) 391, 1145, 1264
BalI TGGCCA 2 cut(s) 301, 1099
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 1 cut(s) 659
BbsI GAAGAC 4 cut(s) 805, 1353, 1400, 1406
Bbv12I GWGCWC 2 cut(s) 659, 764
BbvCI CCTCAGC 2 cut(s) 828, 890
BbvI GCAGC 8 cut(s) 397, 583, 635, 638, 641, 822, 1127, 1408
BccI CCATC 2 cut(s) 1170, 1269
BceAI ACGGC 3 cut(s) 398, 485, 768
BciT130I CCWGG 1 cut(s) 1377
BclI TGATCA 1 cut(s) 1134
BcoDI GTCTC 3 cut(s) 43, 596, 1202
BfaI CTAG 4 cut(s) 201, 489, 803, 1212
BfmI CTRYAG 2 cut(s) 597, 1422
BfoI RGCGCY 1 cut(s) 857
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 646
Bme1390I CCNGG 1 cut(s) 1377
Bme18I GGWCC 3 cut(s) 391, 1145, 1264
BmeT110I CYCGRG 3 cut(s) 667, 710, 1268
BmgT120I GGNCC 3 cut(s) 391, 1145, 1264
BmiI GGNNCC 6 cut(s) 392, 825, 855, 1265, 1266, 1432
BmrFI CCNGG 1 cut(s) 1377
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 487
BmtI GCTAGC 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 4 cut(s) 805, 1353, 1400, 1406
Bpu10I CCTNAGC 2 cut(s) 828, 890
BpuEI CTTGAG 2 cut(s) 44, 1216
BsaHI GRCGYC 2 cut(s) 719, 854
BsaJI CCNNGG 2 cut(s) 501, 711
BsaWI WCCGGW 1 cut(s) 568
Bsc4I CCNNNNNNNGG 1 cut(s) 1275
Bse1I ACTGG 4 cut(s) 176, 302, 321, 528
Bse3DI GCAATG 1 cut(s) 975
BseBI CCWGG 1 cut(s) 1377
BseDI CCNNGG 2 cut(s) 501, 711
BseGI GGATG 2 cut(s) 577, 1181
BseLI CCNNNNNNNGG 1 cut(s) 1275
BseMI GCAATG 1 cut(s) 975
BseMII CTCAG 4 cut(s) 465, 842, 881, 1084
BseNI ACTGG 4 cut(s) 176, 302, 321, 528
BseRI GAGGAG 1 cut(s) 1443
BseXI GCAGC 8 cut(s) 397, 583, 635, 638, 641, 822, 1127, 1408
BseYI CCCAGC 1 cut(s) 1028
BsgI GTGCAG 2 cut(s) 65, 1422
BshFI GGCC 2 cut(s) 301, 1099
BshNI GGYRCC 1 cut(s) 853
BsiHKAI GWGCWC 2 cut(s) 659, 764
BsiHKCI CYCGRG 3 cut(s) 667, 710, 1268
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 2 cut(s) 1105, 1277
BslI CCNNNNNNNGG 1 cut(s) 1275
BsmAI GTCTC 3 cut(s) 43, 596, 1202
BsmFI GGGAC 2 cut(s) 1105, 1277
BsmI GAATGC 1 cut(s) 1388
BsnI GGCC 2 cut(s) 301, 1099
BsoBI CYCGRG 3 cut(s) 667, 710, 1268
Bsp1286I GDGCHC 2 cut(s) 659, 764
Bsp1407I TGTACA 1 cut(s) 909
Bsp143I GATC 5 cut(s) 843, 961, 1048, 1134, 1392
BspACI CCGC 5 cut(s) 533, 536, 551, 554, 833
BspANI GGCC 2 cut(s) 301, 1099
BspCNI CTCAG 4 cut(s) 464, 841, 882, 1083
BspLI GGNNCC 6 cut(s) 392, 825, 855, 1265, 1266, 1432
BspMAI CTGCAG 2 cut(s) 601, 1426
BspMI ACCTGC 1 cut(s) 646
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 2 cut(s) 851, 969
BspT107I GGYRCC 1 cut(s) 853
BspTI CTTAAG 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 975
BsrGI TGTACA 1 cut(s) 909
BsrI ACTGG 4 cut(s) 176, 302, 321, 528
BssECI CCNNGG 2 cut(s) 501, 711
BssMI GATC 5 cut(s) 843, 961, 1048, 1134, 1392
BssNI GRCGYC 2 cut(s) 719, 854
Bst2UI CCWGG 1 cut(s) 1377
Bst6I CTCTTC 3 cut(s) 83, 380, 1299
BstACI GRCGYC 2 cut(s) 719, 854
BstAFI CTTAAG 1 cut(s) 983
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 909
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 4 cut(s) 451, 828, 890, 1070
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 577, 1181
BstH2I RGCGCY 1 cut(s) 857
BstHHI GCGC 1 cut(s) 856
BstKTI GATC 5 cut(s) 846, 964, 1051, 1137, 1395
BstMAI GTCTC 3 cut(s) 43, 596, 1202
BstMBI GATC 5 cut(s) 843, 961, 1048, 1134, 1392
BstMWI GCNNNNNNNGC 6 cut(s) 52, 629, 638, 1112, 1186, 1430
BstNI CCWGG 1 cut(s) 1377
BstSCI CCNGG 1 cut(s) 1375
BstSFI CTRYAG 2 cut(s) 597, 1422
BstV1I GCAGC 8 cut(s) 397, 583, 635, 638, 641, 822, 1127, 1408
BstV2I GAAGAC 4 cut(s) 805, 1353, 1400, 1406
BsuRI GGCC 2 cut(s) 301, 1099
BtgI CCRYGG 1 cut(s) 501
BtsCI GGATG 2 cut(s) 577, 1181
BtsI GCAGTG 2 cut(s) 744, 1434
BtsIMutI CAGTG 3 cut(s) 521, 744, 1434
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 3 cut(s) 638, 835, 953
CfoI GCGC 1 cut(s) 856
Cfr13I GGNCC 3 cut(s) 391, 1145, 1264
CseI GACGC 2 cut(s) 727, 953
Csp6I GTAC 3 cut(s) 366, 566, 910
CviAII CATG 3 cut(s) 1095, 1396, 1418
CviQI GTAC 3 cut(s) 366, 566, 910
DdeI CTNAG 4 cut(s) 451, 828, 890, 1070
DinI GGCGCC 1 cut(s) 855
DpnI GATC 5 cut(s) 845, 963, 1050, 1136, 1394
DpnII GATC 5 cut(s) 843, 961, 1048, 1134, 1392
DraI TTTAAA 1 cut(s) 781
EaeI YGGCCR 2 cut(s) 299, 1097
Eam1104I CTCTTC 3 cut(s) 83, 380, 1299
EarI CTCTTC 3 cut(s) 83, 380, 1299
EciI GGCGGA 1 cut(s) 522
Ecl136II GAGCTC 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 659
Eco47I GGWCC 3 cut(s) 391, 1145, 1264
Eco53kI GAGCTC 1 cut(s) 657
Eco88I CYCGRG 3 cut(s) 667, 710, 1268
EcoICRI GAGCTC 1 cut(s) 657
EcoO109I RGGNCCY 2 cut(s) 1145, 1264
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 1 cut(s) 1375
EcoT38I GRGCYC 1 cut(s) 659
EgeI GGCGCC 1 cut(s) 855
EheI GGCGCC 1 cut(s) 855
FaeI CATG 3 cut(s) 1098, 1399, 1421
FalI AAGNNNNNCTT 4 cut(s) 1225, 1257, 1326, 1358
FaqI GGGAC 2 cut(s) 1105, 1277
FatI CATG 3 cut(s) 1094, 1395, 1417
FbaI TGATCA 1 cut(s) 1134
FokI GGATG 2 cut(s) 584, 1188
FriOI GRGCYC 1 cut(s) 659
FspBI CTAG 4 cut(s) 201, 489, 803, 1212
GlaI GCGC 1 cut(s) 855
GsaI CCCAGC 1 cut(s) 1032
HaeII RGCGCY 1 cut(s) 857
HaeIII GGCC 2 cut(s) 301, 1099
HapII CCGG 1 cut(s) 569
HgaI GACGC 2 cut(s) 727, 953
HhaI GCGC 1 cut(s) 856
Hin1I GRCGYC 2 cut(s) 719, 854
Hin1II CATG 3 cut(s) 1098, 1399, 1421
Hin6I GCGC 1 cut(s) 854
HinP1I GCGC 1 cut(s) 854
HinfI GANTC 3 cut(s) 866, 1157, 1368
HpaII CCGG 1 cut(s) 569
HphI GGTGA 3 cut(s) 120, 727, 1144
Hpy166II GTNNAC 3 cut(s) 675, 1021, 1045
Hpy188I TCNGA 5 cut(s) 253, 661, 883, 1073, 1311
Hpy188III TCNNGA 2 cut(s) 927, 1343
Hpy8I GTNNAC 3 cut(s) 675, 1021, 1045
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 4 cut(s) 76, 720, 1123, 1136
HpyCH4V TGCA 6 cut(s) 46, 599, 641, 1115, 1424, 1439
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 629, 638, 1112, 1186, 1430
HpyF3I CTNAG 4 cut(s) 451, 828, 890, 1070
Hsp92I GRCGYC 2 cut(s) 719, 854
Hsp92II CATG 3 cut(s) 1098, 1399, 1421
HspAI GCGC 1 cut(s) 854
KasI GGCGCC 1 cut(s) 853
KflI GGGWCCC 1 cut(s) 1264
Ksp22I TGATCA 1 cut(s) 1134
Kzo9I GATC 5 cut(s) 843, 961, 1048, 1134, 1392
LmnI GCTCC 6 cut(s) 209, 466, 662, 1307, 1391, 1430
Lsp1109I GCAGC 8 cut(s) 397, 583, 635, 638, 641, 822, 1127, 1408
LweI GCATC 1 cut(s) 487
MaeI CTAG 4 cut(s) 201, 489, 803, 1212
MaeIII GTNAC 3 cut(s) 323, 715, 742
MalI GATC 5 cut(s) 845, 963, 1050, 1136, 1394
MboI GATC 5 cut(s) 843, 961, 1048, 1134, 1392
MfeI CAATTG 1 cut(s) 1101
MhlI GDGCHC 2 cut(s) 659, 764
MlsI TGGCCA 2 cut(s) 301, 1099
MluNI TGGCCA 2 cut(s) 301, 1099
Mly113I GGCGCC 1 cut(s) 854
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 488
Mox20I TGGCCA 2 cut(s) 301, 1099
MroXI GAANNNNTTC 1 cut(s) 1338
MscI TGGCCA 2 cut(s) 301, 1099
MseI TTAA 9 cut(s) 5, 219, 227, 236, 342, 579, 774, 780, 984
Msp20I TGGCCA 2 cut(s) 301, 1099
MspA1I CMGCKG 1 cut(s) 835
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 1377
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 1 cut(s) 1388
MvaI CCWGG 1 cut(s) 1377
MwoI GCNNNNNNNGC 6 cut(s) 52, 629, 638, 1112, 1186, 1430
NarI GGCGCC 1 cut(s) 854
NdeII GATC 5 cut(s) 843, 961, 1048, 1134, 1392
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 3 cut(s) 1098, 1399, 1421
NlaIV GGNNCC 6 cut(s) 392, 825, 855, 1265, 1266, 1432
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 2 cut(s) 715, 742
PaeR7I CTCGAG 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 1 cut(s) 1388
PdmI GAANNNNTTC 1 cut(s) 1338
PfeI GAWTC 2 cut(s) 1157, 1368
PleI GAGTC 1 cut(s) 874
PluTI GGCGCC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 874
PpuMI RGGWCCY 2 cut(s) 1145, 1264
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 659
Psp5II RGGWCCY 2 cut(s) 1145, 1264
Psp6I CCWGG 1 cut(s) 1375
PspFI CCCAGC 1 cut(s) 1028
PspGI CCWGG 1 cut(s) 1375
PspN4I GGNNCC 6 cut(s) 392, 825, 855, 1265, 1266, 1432
PspPI GGNCC 3 cut(s) 391, 1145, 1264
PspPPI RGGWCCY 2 cut(s) 1145, 1264
PspXI VCTCGAGB 1 cut(s) 667
PstI CTGCAG 2 cut(s) 601, 1426
PstNI CAGNNNCTG 3 cut(s) 638, 835, 953
RsaI GTAC 3 cut(s) 367, 567, 911
RsaNI GTAC 3 cut(s) 366, 566, 910
SacI GAGCTC 1 cut(s) 659
SaqAI TTAA 9 cut(s) 5, 219, 227, 236, 342, 579, 774, 780, 984
Sau3AI GATC 5 cut(s) 843, 961, 1048, 1134, 1392
Sau96I GGNCC 3 cut(s) 391, 1145, 1264
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 1 cut(s) 1377
SduI GDGCHC 2 cut(s) 659, 764
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 2 cut(s) 597, 1422
SfoI GGCGCC 1 cut(s) 855
Sfr274I CTCGAG 1 cut(s) 667
SinI GGWCC 3 cut(s) 391, 1145, 1264
SlaI CTCGAG 1 cut(s) 667
SmlI CTYRAG 4 cut(s) 59, 667, 983, 1231
SmoI CTYRAG 4 cut(s) 59, 667, 983, 1231
SsiI CCGC 5 cut(s) 533, 536, 551, 554, 833
SspDI GGCGCC 1 cut(s) 853
SspMI CTAG 4 cut(s) 201, 489, 803, 1212
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 1 cut(s) 1375
TaqI TCGA 4 cut(s) 668, 869, 926, 1062
TatI WGTACW 1 cut(s) 909
TauI GCSGC 3 cut(s) 538, 556, 835
TfiI GAWTC 2 cut(s) 1157, 1368
Tru1I TTAA 9 cut(s) 5, 219, 227, 236, 342, 579, 774, 780, 984
Tru9I TTAA 9 cut(s) 5, 219, 227, 236, 342, 579, 774, 780, 984
TscAI CASTG 3 cut(s) 528, 751, 1441
TseFI GTSAC 2 cut(s) 715, 742
TseI GCWGC 8 cut(s) 410, 596, 623, 626, 629, 835, 1115, 1421
Tsp45I GTSAC 2 cut(s) 715, 742
TspDTI ATGAA 8 cut(s) 721, 888, 947, 1208, 1214, 1215, 1278, 1406
TspGWI ACGGA 3 cut(s) 386, 482, 878
TspRI CASTG 3 cut(s) 528, 751, 1441
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 3 cut(s) 391, 1145, 1264
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 6 cut(s) 260, 273, 338, 934, 1312, 1322
XcmI CCANNNNNNNNNTGG 2 cut(s) 37, 520
XhoI CTCGAG 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 1338
XspI CTAG 4 cut(s) 201, 489, 803, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.